Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006898

Physical Location & Seq

Genomic Coordinates Forward (+)

15550463 .. 15555207

Gene Structure 4745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0185400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAGGGTAGGGAAGCTGTGAATACTAGTGGGGTTACAGTGGTGGGATCAGATGCTCCGTCAGACTACCACGTGGCTCCGAGGGCCGAAAACCCGGCCAATAACGCCGGATCAGCACCTGCGCCGCCGGTTGCGCCGCCTCCCGCGGCGGCGATGCCGGCGGGGCCCGGGTCCGTGGCGGTGAAGAAGAAGAGAGGGAGGCCGAGGAAGTATGGGCCAGATGGGAGCGTGACTATGGCGCTGTCGCCGAAGCCGATATCGTCGGCGGCGCCGCCTCCGGTGATTGATTTCGCGGCGGAGAAGCAGCCGCGGGGGAAGGTGAAGCCGGCCAGCTCAGTGAGCAAGAACAAGTATGAGATGGAGAATTTAGGTGAATGGGTTGCATGCTCTGTTGGTGCTAATTTTACTCCTCATATCATCAATGTTAATTCTGGCGAGGATGTCATGATGAAGATTATATCATTTTCTCAACAAGGTCCTCGAGCTATATGTGTGCTCTCCGCAAATGGTGTTATATCAAGTGTTACACTTCGTCAACCTGATTCTTCTGGTGGTACATTGACATATGAGGGTCGTTTCGAGATACTGTCTTTATCTGGTTCCTTTATGCCAAATGAAAGTGGAGGGACAAGAAGCAGATCAGGTGGGATGAGTGTTTCTTTAGCAAGTCCAGATGGGCGTGTCGTAGGTGGTGGAGTTGCTGGACTATTAGTTGCTGCAAGTCCTGTGCAGGTTGTAGTTGGCAGTTTTCTGGCAGGAAACCAGCATGAGCAGAAACCCAAGAAACAGAAACATGAATACATTTCTAATGCAACACCAACTATGGCTATTCCTGTTTCGAGTGCTGAACCAAAGACAAACCTCTCATCTTCGACTTCCTTCCGTGGTGATAATTGGTCTTCGTATCAATCCGATCATAAAAATAAGACTGACATTAATGTATCATTGCCTGGAGGTGTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

321

Amino Acids

33.12

Weight (kDa)

9.37

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	136 - 250	1.6e-26	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63660 AT1G63660
fragaria_vesca	FvH4_5g27720 FvH4_5g27720
malus_domestica	MD06G1084500.v1.1 MD14G1105600.v1.1
prunus_persica	Prupe.5G100800_v2.0.a1
pyrus_communis	pycom06g08080 pycom14g10110
rosa_chinensis	RchiOBHm_Chr1g0356411 RchiOBHm_Chr7g0219471
rosa_laevigata	RLG00000002288 RLG00000005808 RLG00000011737
rosa_multiflora	Rmu_sc0003767.1_g000005 Rmu_sc0012443.1_g000008
rosa_roxburghii	Rroxscaffold_3G00240030 Rroxscaffold_5G00385240 Rroxscaffold_6G00391170
rosa_rugosa	Rorug07G0185400
rosa_samantha	Rh4DG422800 Rh7BG318200 Rh7CG345600 Rh7DG324200
rosa_wichuraiana	Rw1G013280 Rw7G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
Acc36I	ACCTGC	2 cut(s)	127, 721
AccB1I	GGYRCC	1 cut(s)	268
AccII	CGCG	3 cut(s)	146, 293, 310
AclWI	GGATC	2 cut(s)	55, 118
AcoI	YGGCCR	2 cut(s)	96, 327
AcsI	RAATTY	1 cut(s)	364
AcvI	CACGTG	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	1 cut(s)	556
AhlI	ACTAGT	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	949
AluBI	AGCT	3 cut(s)	17, 333, 485
AluI	AGCT	3 cut(s)	17, 333, 485
Alw21I	GWGCWC	1 cut(s)	498
AlwI	GGATC	2 cut(s)	55, 118
AlwNI	CAGNNNCTG	1 cut(s)	119
Ama87I	CYCGRG	2 cut(s)	167, 480
AoxI	GGCC	6 cut(s)	84, 96, 164, 200, 215, 327
ApaI	GGGCCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	304, 716
ApoI	RAATTY	1 cut(s)	364
AseI	ATTAAT	1 cut(s)	936
AspLEI	GCGC	4 cut(s)	124, 136, 241, 271
AspS9I	GGNCC	6 cut(s)	84, 164, 165, 171, 215, 476
AsuC2I	CCSGG	3 cut(s)	95, 168, 169
AsuHPI	GGTGA	5 cut(s)	193, 292, 331, 383, 899
AvaI	CYCGRG	2 cut(s)	167, 480
AvaII	GGWCC	2 cut(s)	171, 476
BaeGI	GKGCMC	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	168
BbrPI	CACGTG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	316, 703
BccI	CCATC	3 cut(s)	215, 352, 668
BciT130I	CCWGG	1 cut(s)	951
BcnI	CCSGG	3 cut(s)	95, 168, 169
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	1 cut(s)	27
BfoI	RGCGCY	2 cut(s)	242, 272
BfuAI	ACCTGC	2 cut(s)	127, 721
BglI	GCCNNNNNGGC	1 cut(s)	163
Bme1390I	CCNGG	4 cut(s)	95, 168, 169, 951
Bme18I	GGWCC	2 cut(s)	171, 476
BmeT110I	CYCGRG	2 cut(s)	167, 480
BmgT120I	GGNCC	6 cut(s)	84, 164, 165, 171, 215, 476
BmiI	GGNNCC	6 cut(s)	78, 165, 166, 172, 270, 601
BmrFI	CCNGG	4 cut(s)	95, 168, 169, 951
BmsI	GCATC	2 cut(s)	43, 144
BpiI	GAAGAC	1 cut(s)	891
BpuMI	CCSGG	3 cut(s)	95, 168, 169
BsaAI	YACGTR	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	7 cut(s)	80, 144, 167, 174, 203, 308, 883
BsaWI	WCCGGW	1 cut(s)	277
Bse118I	RCCGGY	3 cut(s)	127, 157, 325
Bse3DI	GCAATG	1 cut(s)	944
BseBI	CCWGG	1 cut(s)	951
BseDI	CCNNGG	7 cut(s)	80, 144, 167, 174, 203, 308, 883
BseGI	GGATG	2 cut(s)	445, 654
BseMI	GCAATG	1 cut(s)	944
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	399
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	316, 703
BsgI	GTGCAG	1 cut(s)	749
Bsh1236I	CGCG	3 cut(s)	146, 293, 310
BshFI	GGCC	6 cut(s)	86, 98, 166, 202, 217, 329
BshNI	GGYRCC	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	498
BsiHKCI	CYCGRG	2 cut(s)	167, 480
BsiSI	CCGG	7 cut(s)	95, 108, 128, 158, 168, 278, 326
BslFI	GGGAC	1 cut(s)	640
BsmFI	GGGAC	1 cut(s)	640
BsnI	GGCC	6 cut(s)	86, 98, 166, 202, 217, 329
BsoBI	CYCGRG	2 cut(s)	167, 480
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	168, 498
Bsp143I	GATC	4 cut(s)	47, 110, 638, 913
BspANI	GGCC	6 cut(s)	86, 98, 166, 202, 217, 329
BspCNI	CTCAG	1 cut(s)	347
BspFNI	CGCG	3 cut(s)	146, 293, 310
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	6 cut(s)	78, 165, 166, 172, 270, 601
BspMI	ACCTGC	2 cut(s)	127, 721
BspPI	GGATC	2 cut(s)	55, 118
BspT107I	GGYRCC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	944
BsrFI	RCCGGY	3 cut(s)	127, 157, 325
BssAI	RCCGGY	3 cut(s)	127, 157, 325
BssECI	CCNNGG	7 cut(s)	80, 144, 167, 174, 203, 308, 883
BssMI	GATC	4 cut(s)	47, 110, 638, 913
BssNI	GRCGYC	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	951
Bst4CI	ACNGT	2 cut(s)	40, 588
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	73
BstC8I	GCNNGC	4 cut(s)	159, 327, 331, 385
BstDEI	CTNAG	1 cut(s)	334
BstDSI	CCRYGG	4 cut(s)	144, 174, 308, 883
BstF5I	GGATG	2 cut(s)	445, 654
BstFNI	CGCG	3 cut(s)	146, 293, 310
BstH2I	RGCGCY	2 cut(s)	242, 272
BstHHI	GCGC	4 cut(s)	124, 136, 241, 271
BstKTI	GATC	4 cut(s)	50, 113, 641, 916
BstMBI	GATC	4 cut(s)	47, 110, 638, 913
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 104, 113, 133, 158, 163, 339
BstNI	CCWGG	1 cut(s)	951
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	4 cut(s)	93, 166, 167, 949
BstSLI	GKGCMC	1 cut(s)	168
BstUI	CGCG	3 cut(s)	146, 293, 310
BstV1I	GCAGC	2 cut(s)	316, 703
BstV2I	GAAGAC	1 cut(s)	891
BsuRI	GGCC	6 cut(s)	86, 98, 166, 202, 217, 329
BtgI	CCRYGG	4 cut(s)	144, 174, 308, 883
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	445, 654
BtsIMutI	CAGTG	2 cut(s)	45, 342
BveI	ACCTGC	2 cut(s)	127, 721
Cac8I	GCNNGC	4 cut(s)	159, 327, 331, 385
CaiI	CAGNNNCTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	444
CfoI	GCGC	4 cut(s)	124, 136, 241, 271
Cfr10I	RCCGGY	3 cut(s)	127, 157, 325
Cfr13I	GGNCC	6 cut(s)	84, 164, 165, 171, 215, 476
Cfr42I	CCGCGG	2 cut(s)	147, 311
Cfr9I	CCCGGG	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	555
CviAII	CATG	4 cut(s)	384, 445, 767, 794
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	1 cut(s)	334
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	4 cut(s)	49, 112, 640, 915
DpnII	GATC	4 cut(s)	47, 110, 638, 913
EaeI	YGGCCR	2 cut(s)	96, 327
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	171, 476
Eco72I	CACGTG	1 cut(s)	73
Eco88I	CYCGRG	2 cut(s)	167, 480
EcoO109I	RGGNCCY	2 cut(s)	164, 476
EcoRII	CCWGG	1 cut(s)	949
EcoRV	GATATC	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
FaeI	CATG	4 cut(s)	387, 448, 770, 797
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	4 cut(s)	383, 444, 766, 793
FauI	CCCGC	3 cut(s)	151, 154, 303
FauNDI	CATATG	1 cut(s)	565
FokI	GGATG	2 cut(s)	452, 661
FriOI	GRGCYC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	4 cut(s)	123, 135, 240, 270
HaeII	RGCGCY	2 cut(s)	242, 272
HaeIII	GGCC	6 cut(s)	86, 98, 166, 202, 217, 329
HapII	CCGG	7 cut(s)	95, 108, 128, 158, 168, 278, 326
HhaI	GCGC	4 cut(s)	124, 136, 241, 271
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	4 cut(s)	387, 448, 770, 797
Hin6I	GCGC	4 cut(s)	122, 134, 239, 269
HinP1I	GCGC	4 cut(s)	122, 134, 239, 269
HincII	GTYRAC	1 cut(s)	536
HindII	GTYRAC	1 cut(s)	536
HinfI	GANTC	1 cut(s)	542
HpaII	CCGG	7 cut(s)	95, 108, 128, 158, 168, 278, 326
HphI	GGTGA	5 cut(s)	193, 292, 331, 383, 899
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	4 cut(s)	52, 64, 81, 913
Hpy188III	TCNNGA	3 cut(s)	445, 580, 671
Hpy8I	GTNNAC	1 cut(s)	536
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	310, 889
HpyCH4III	ACNGT	2 cut(s)	40, 588
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	4 cut(s)	383, 719, 730, 812
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 104, 113, 133, 158, 163, 339
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	4 cut(s)	387, 448, 770, 797
HspAI	GCGC	4 cut(s)	122, 134, 239, 269
KasI	GGCGCC	1 cut(s)	268
KroI	GCCGGC	2 cut(s)	157, 325
KroNI	GCCGGC	2 cut(s)	159, 327
KspI	CCGCGG	2 cut(s)	147, 311
Kzo9I	GATC	4 cut(s)	47, 110, 638, 913
LmnI	GCTCC	3 cut(s)	61, 82, 225
Lsp1109I	GCAGC	2 cut(s)	316, 703
LweI	GCATC	2 cut(s)	43, 144
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	34, 229, 523
MalI	GATC	4 cut(s)	49, 112, 640, 915
MboI	GATC	4 cut(s)	47, 110, 638, 913
MboII	GAAGA	7 cut(s)	196, 199, 202, 463, 537, 861, 891
MhlI	GDGCHC	2 cut(s)	168, 498
MluCI	AATT	4 cut(s)	364, 400, 427, 892
Mly113I	GGCGCC	1 cut(s)	269
MroNI	GCCGGC	2 cut(s)	157, 325
MseI	TTAA	2 cut(s)	426, 936
MspA1I	CMGCKG	2 cut(s)	146, 310
MspI	CCGG	7 cut(s)	95, 108, 128, 158, 168, 278, 326
MspR9I	CCNGG	4 cut(s)	95, 168, 169, 951
MvaI	CCWGG	1 cut(s)	951
MvnI	CGCG	3 cut(s)	146, 293, 310
MwoI	GCNNNNNNNGC	7 cut(s)	83, 104, 113, 133, 158, 163, 339
NaeI	GCCGGC	2 cut(s)	159, 327
NarI	GGCGCC	1 cut(s)	269
NciI	CCSGG	3 cut(s)	95, 168, 169
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	4 cut(s)	47, 110, 638, 913
NgoMIV	GCCGGC	2 cut(s)	157, 325
NlaIII	CATG	4 cut(s)	387, 448, 770, 797
NlaIV	GGNNCC	6 cut(s)	78, 165, 166, 172, 270, 601
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	387
PaeI	GCATGC	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	480
PagI	TCATGA	1 cut(s)	444
PaqCI	CACCTGC	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PdiI	GCCGGC	2 cut(s)	159, 327
PfeI	GAWTC	1 cut(s)	542
PluTI	GGCGCC	1 cut(s)	272
PmaCI	CACGTG	1 cut(s)	73
PmlI	CACGTG	1 cut(s)	73
Ppu21I	YACGTR	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	949
PspCI	CACGTG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	949
PspN4I	GGNNCC	6 cut(s)	78, 165, 166, 172, 270, 601
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	6 cut(s)	84, 164, 165, 171, 215, 476
PspPPI	RGGWCCY	1 cut(s)	476
PspXI	VCTCGAGB	1 cut(s)	480
PstNI	CAGNNNCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
SacII	CCGCGG	2 cut(s)	147, 311
SaqAI	TTAA	2 cut(s)	426, 936
Sau3AI	GATC	4 cut(s)	47, 110, 638, 913
Sau96I	GGNCC	6 cut(s)	84, 164, 165, 171, 215, 476
ScrFI	CCNGG	4 cut(s)	95, 168, 169, 951
SduI	GDGCHC	2 cut(s)	168, 498
SfaNI	GCATC	2 cut(s)	43, 144
SfoI	GGCGCC	1 cut(s)	270
Sfr274I	CTCGAG	1 cut(s)	480
Sfr303I	CCGCGG	2 cut(s)	147, 311
SgrBI	CCGCGG	2 cut(s)	147, 311
SinI	GGWCC	2 cut(s)	171, 476
SlaI	CTCGAG	1 cut(s)	480
SmaI	CCCGGG	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	480
SmoI	CTYRAG	1 cut(s)	480
SpeI	ACTAGT	1 cut(s)	26
SphI	GCATGC	1 cut(s)	387
Sse9I	AATT	4 cut(s)	364, 400, 427, 892
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	4 cut(s)	93, 166, 167, 949
TaaI	ACNGT	2 cut(s)	40, 588
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	4 cut(s)	481, 579, 839, 872
TasI	AATT	4 cut(s)	364, 400, 427, 892
TauI	GCSGC	8 cut(s)	127, 139, 149, 152, 269, 274, 296, 310
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	2 cut(s)	426, 936
Tru9I	TTAA	2 cut(s)	426, 936
TscAI	CASTG	2 cut(s)	45, 342
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	2 cut(s)	304, 716
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	464, 630, 810
TspGWI	ACGGA	3 cut(s)	48, 163, 872
TspMI	CCCGGG	1 cut(s)	167
TspRI	CASTG	2 cut(s)	45, 342
VpaK11BI	GGWCC	2 cut(s)	171, 476
VspI	ATTAAT	1 cut(s)	936
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	1 cut(s)	387
XhoI	CTCGAG	1 cut(s)	480
XmaI	CCCGGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.