Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012443.1

Orthogroup ID

OG0006898

Physical Location & Seq

Genomic Coordinates Forward (+)

28445 .. 29392

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012443.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgagcgatggcgatgaggtggccaagctgccccacgggttcgaggtagtgggcaagagccagaagcgggtggtggccgccatcaagagccagtcaaggaggctctatgggctgccgtaccacccggagggtgacacattcgctgaaaaggacggagtctggagacacttggacacttccttttcgatgttaatttgtggagtcactccagcaggatggaattggatgaggaaattaaatccgctgcaccacctggaagtagtaaaggaaggtcgactcactcccacaaaatcaagagccatcataatgtcggagggcttagcggtgagagttgtaggtggtgatatgacagcagaaaatgctttgaaaatcgtccgccaggttgatgagatccctttatgtaagatcaaatatggacataacacatatcatcataaagtaattgatgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

150

Amino Acids

16.83

Weight (kDa)

8.89

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63660 AT1G63660
fragaria_vesca	FvH4_5g27720 FvH4_5g27720
malus_domestica	MD06G1084500.v1.1 MD14G1105600.v1.1
prunus_persica	Prupe.5G100800_v2.0.a1
pyrus_communis	pycom06g08080 pycom14g10110
rosa_chinensis	RchiOBHm_Chr1g0356411 RchiOBHm_Chr7g0219471
rosa_laevigata	RLG00000002288 RLG00000005808 RLG00000011737
rosa_multiflora	Rmu_sc0003767.1_g000005 Rmu_sc0012443.1_g000008
rosa_roxburghii	Rroxscaffold_3G00240030 Rroxscaffold_5G00385240 Rroxscaffold_6G00391170
rosa_rugosa	Rorug07G0185400
rosa_samantha	Rh4DG422800 Rh7BG318200 Rh7CG345600 Rh7DG324200
rosa_wichuraiana	Rw1G013280 Rw7G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	274
AciI	CCGC	5 cut(s)	67, 78, 242, 323, 376
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	2 cut(s)	21, 75
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	67, 127
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	252, 378
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	2 cut(s)	21, 75
ApeKI	GCWGC	3 cut(s)	28, 112, 244
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	3 cut(s)	143, 337, 353
BalI	TGGCCA	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	15, 99, 231
BccI	CCATC	4 cut(s)	2, 89, 210, 308
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	2 cut(s)	254, 380
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	157
BisI	GCNGC	4 cut(s)	29, 78, 113, 245
BlpI	GCTNAGC	1 cut(s)	319
BlsI	GCNGC	4 cut(s)	30, 79, 114, 246
Bme1390I	CCNGG	3 cut(s)	125, 254, 380
BmrFI	CCNGG	3 cut(s)	125, 254, 380
BpmI	CTGGAG	2 cut(s)	181, 192
Bpu1102I	GCTNAGC	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 127
Bse1I	ACTGG	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	254, 380
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	2 cut(s)	221, 231
BseLI	CCNNNNNNNGG	2 cut(s)	67, 127
BseNI	ACTGG	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	15, 99, 231
BsgI	GTGCAG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	23, 77
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	67, 127
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	23, 77
Bsp143I	GATC	2 cut(s)	390, 405
Bsp1720I	GCTNAGC	1 cut(s)	319
BspACI	CCGC	5 cut(s)	67, 78, 242, 323, 376
BspANI	GGCC	2 cut(s)	23, 77
BspPI	GGATC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	2 cut(s)	390, 405
Bst2UI	CCWGG	2 cut(s)	254, 380
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstDEI	CTNAG	1 cut(s)	319
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	221, 231
BstKTI	GATC	2 cut(s)	393, 408
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	390, 405
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 359
BstNI	CCWGG	2 cut(s)	254, 380
BstSCI	CCNGG	3 cut(s)	123, 252, 378
BstV1I	GCAGC	3 cut(s)	15, 99, 231
BstX2I	RGATCY	1 cut(s)	390
BstXI	CCANNNNNNTGG	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	23, 77
BtgI	CCRYGG	1 cut(s)	34
BtgZI	GCGATG	2 cut(s)	21, 27
BtsCI	GGATG	2 cut(s)	221, 231
Csp6I	GTAC	1 cut(s)	118
CviJI	RGCY	9 cut(s)	23, 28, 60, 77, 90, 103, 112, 299, 318
CviKI_1	RGCY	9 cut(s)	23, 28, 60, 77, 90, 103, 112, 299, 318
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	2 cut(s)	392, 407
DpnII	GATC	2 cut(s)	390, 405
EaeI	YGGCCR	2 cut(s)	21, 75
EciI	GGCGGA	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	252, 378
FaiI	YATR	8 cut(s)	108, 305, 347, 400, 414, 420, 427, 435
FauI	CCCGC	1 cut(s)	60
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	29, 78, 113, 245
FokI	GGATG	2 cut(s)	228, 238
Fsp4HI	GCNGC	4 cut(s)	29, 78, 113, 245
GluI	GCNGC	4 cut(s)	29, 78, 113, 245
GsuI	CTGGAG	2 cut(s)	181, 192
HaeIII	GGCC	2 cut(s)	23, 77
HapII	CCGG	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	275
HindII	GTYRAC	1 cut(s)	275
HinfI	GANTC	3 cut(s)	156, 201, 276
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	3 cut(s)	143, 337, 353
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	3 cut(s)	85, 160, 294
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 359
HpyF3I	CTNAG	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	390, 405
Lsp1109I	GCAGC	3 cut(s)	15, 99, 231
MaeIII	GTNAC	2 cut(s)	131, 202
MalI	GATC	2 cut(s)	392, 407
MboI	GATC	2 cut(s)	390, 405
MflI	RGATCY	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	4 cut(s)	192, 220, 233, 441
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	3 cut(s)	165, 210, 270
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	6 cut(s)	10, 37, 93, 121, 222, 307
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	2 cut(s)	191, 236
MslI	CAYNNNNRTG	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	3 cut(s)	125, 254, 380
MvaI	CCWGG	2 cut(s)	254, 380
MwoI	GCNNNNNNNGC	2 cut(s)	109, 359
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	2 cut(s)	390, 405
NmuCI	GTSAC	2 cut(s)	131, 202
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	4 cut(s)	30, 79, 114, 246
PleI	GAGTC	3 cut(s)	164, 209, 270
PpsI	GAGTC	3 cut(s)	164, 209, 270
Psp6I	CCWGG	2 cut(s)	252, 378
PspGI	CCWGG	2 cut(s)	252, 378
PsuI	RGATCY	1 cut(s)	390
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	305
SalI	GTCGAC	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	191, 236
SatI	GCNGC	4 cut(s)	29, 78, 113, 245
Sau3AI	GATC	2 cut(s)	390, 405
SchI	GAGTC	3 cut(s)	165, 210, 270
ScrFI	CCNGG	3 cut(s)	125, 254, 380
SetI	ASST	7 cut(s)	21, 30, 48, 255, 274, 340, 384
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	192, 220, 233, 441
SsiI	CCGC	5 cut(s)	67, 78, 242, 323, 376
StyD4I	CCNGG	3 cut(s)	123, 252, 378
TaqI	TCGA	3 cut(s)	42, 185, 274
TasI	AATT	4 cut(s)	192, 220, 233, 441
TauI	GCSGC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	191, 236
Tru9I	TTAA	2 cut(s)	191, 236
TseFI	GTSAC	2 cut(s)	131, 202
TseI	GCWGC	3 cut(s)	28, 112, 244
Tsp45I	GTSAC	2 cut(s)	131, 202
TspGWI	ACGGA	1 cut(s)	168
Tth111I	GACNNNGTC	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.