Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006898

Physical Location & Seq

Genomic Coordinates Forward (+)

29622688 .. 29623206

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCAAGATGGAGATTGTGGTGGAGAGCAATTCGGGGATTTTCCAGGCCCAAGAGGGTTGGGGATAGGCAGGTGGTGTGGATGAGCCATGGGGATGAGGTGGCTAAGTTGCCCCAGGGGTTCCGGGTGATGGCGCAGAGCCAGCAGGGAGTGGTGGCCGCCATTGAAAGCCCTGAAAGGAGGTTCTATGGGCTGCAGTACCACCCTGAGGTATTATTTCAATGGACTTGTTATCATGTGCTTTCAACATTTTTGTTATGTATGCTGCTCACCTTCGCAGTCACAATTCTTTTGGGTACAGAGCCAATGCTTTGCTCACCTTCGCAGTCACAATTCTCGCCCTCATGTGCGCCATGGCCTCCATGTCTGACAATTTCAACACCCCATCTCCCACTTCTCAAGTCCAGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

137

Amino Acids

15.75

Weight (kDa)

9.49

Isoelectric Point (pI)

82.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	20 - 75	9.2e-12	Glutamine amidotransferase class-I
Peptidase_C26	PF07722	26 - 70	2.5e-07	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63660 AT1G63660
fragaria_vesca	FvH4_5g27720 FvH4_5g27720
malus_domestica	MD06G1084500.v1.1 MD14G1105600.v1.1
prunus_persica	Prupe.5G100800_v2.0.a1
pyrus_communis	pycom06g08080 pycom14g10110
rosa_chinensis	RchiOBHm_Chr1g0356411 RchiOBHm_Chr7g0219471
rosa_laevigata	RLG00000002288 RLG00000005808 RLG00000011737
rosa_multiflora	Rmu_sc0003767.1_g000005 Rmu_sc0012443.1_g000008
rosa_roxburghii	Rroxscaffold_3G00240030 Rroxscaffold_5G00385240 Rroxscaffold_6G00391170
rosa_rugosa	Rorug07G0185400
rosa_samantha	Rh4DG422800 Rh7BG318200 Rh7CG345600 Rh7DG324200
rosa_wichuraiana	Rw1G013280 Rw7G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	61
AciI	CCGC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	2 cut(s)	200, 298
AfiI	CCNNNNNNNGG	2 cut(s)	130, 208
AgsI	TTSAA	4 cut(s)	167, 221, 246, 378
AjnI	CCWGG	3 cut(s)	44, 114, 404
AlwNI	CAGNNNCTG	1 cut(s)	411
AoxI	GGCC	3 cut(s)	47, 156, 356
ApeKI	GCWGC	2 cut(s)	193, 265
AspLEI	GCGC	2 cut(s)	136, 352
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	3 cut(s)	139, 262, 309
AxyI	CCTNAGG	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	180, 252
BccI	CCATC	3 cut(s)	3, 124, 393
BciT130I	CCWGG	3 cut(s)	46, 116, 406
BcnI	CCSGG	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	159, 194, 266
BlsI	GCNGC	3 cut(s)	160, 195, 267
Bme1390I	CCNGG	4 cut(s)	46, 116, 125, 406
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	4 cut(s)	46, 116, 125, 406
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	4 cut(s)	88, 114, 115, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 208
Bse21I	CCTNAGG	1 cut(s)	207
BseBI	CCWGG	3 cut(s)	46, 116, 406
BseDI	CCNNGG	4 cut(s)	88, 114, 115, 353
BseGI	GGATG	2 cut(s)	87, 100
BseLI	CCNNNNNNNGG	2 cut(s)	130, 208
BseMII	CTCAG	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	180, 252
BshFI	GGCC	3 cut(s)	49, 158, 358
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	130, 208
BsnI	GGCC	3 cut(s)	49, 158, 358
Bsp19I	CCATGG	2 cut(s)	88, 353
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	3 cut(s)	49, 158, 358
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	122
BspMAI	CTGCAG	1 cut(s)	198
BspMI	ACCTGC	1 cut(s)	61
BssECI	CCNNGG	4 cut(s)	88, 114, 115, 353
BssT1I	CCWWGG	2 cut(s)	88, 353
Bst2UI	CCWGG	3 cut(s)	46, 116, 406
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	105, 207
BstDSI	CCRYGG	2 cut(s)	88, 353
BstF5I	GGATG	2 cut(s)	87, 100
BstHHI	GCGC	2 cut(s)	136, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	3 cut(s)	46, 116, 406
BstSCI	CCNGG	4 cut(s)	44, 114, 123, 404
BstSFI	CTRYAG	1 cut(s)	194
BstV1I	GCAGC	2 cut(s)	180, 252
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	49, 158, 358
BtgI	CCRYGG	2 cut(s)	88, 353
BtsCI	GGATG	2 cut(s)	87, 100
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	411
CfoI	GCGC	2 cut(s)	136, 352
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	2 cut(s)	199, 297
CviAII	CATG	5 cut(s)	89, 236, 345, 354, 363
CviJI	RGCY	9 cut(s)	49, 87, 104, 141, 158, 171, 193, 304, 358
CviKI_1	RGCY	9 cut(s)	49, 87, 104, 141, 158, 171, 193, 304, 358
CviQI	GTAC	2 cut(s)	199, 297
DdeI	CTNAG	2 cut(s)	105, 207
EaeI	YGGCCR	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	88, 353
Eco81I	CCTNAGG	1 cut(s)	207
EcoRII	CCWGG	3 cut(s)	44, 114, 404
EcoT14I	CCWWGG	2 cut(s)	88, 353
ErhI	CCWWGG	2 cut(s)	88, 353
FaeI	CATG	5 cut(s)	92, 239, 348, 357, 366
FaiI	YATR	8 cut(s)	90, 189, 237, 259, 263, 346, 355, 364
FatI	CATG	5 cut(s)	88, 235, 344, 353, 362
Fnu4HI	GCNGC	3 cut(s)	159, 194, 266
FokI	GGATG	2 cut(s)	94, 107
Fsp4HI	GCNGC	3 cut(s)	159, 194, 266
GlaI	GCGC	2 cut(s)	135, 351
GluI	GCNGC	3 cut(s)	159, 194, 266
HaeIII	GGCC	3 cut(s)	49, 158, 358
HapII	CCGG	1 cut(s)	124
HhaI	GCGC	2 cut(s)	136, 352
Hin1II	CATG	5 cut(s)	92, 239, 348, 357, 366
Hin6I	GCGC	2 cut(s)	134, 350
HinP1I	GCGC	2 cut(s)	134, 350
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	3 cut(s)	139, 262, 309
Hpy188I	TCNGA	1 cut(s)	369
HpyAV	CCTTC	2 cut(s)	283, 330
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	2 cut(s)	105, 207
Hsp92II	CATG	5 cut(s)	92, 239, 348, 357, 366
HspAI	GCGC	2 cut(s)	134, 350
Lsp1109I	GCAGC	2 cut(s)	180, 252
MaeIII	GTNAC	2 cut(s)	280, 327
MluCI	AATT	4 cut(s)	30, 285, 332, 372
MnlI	CCTC	6 cut(s)	48, 91, 174, 202, 352, 369
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	4 cut(s)	46, 116, 125, 406
MvaI	CCWGG	3 cut(s)	46, 116, 406
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	125
NcoI	CCATGG	2 cut(s)	88, 353
NlaIII	CATG	5 cut(s)	92, 239, 348, 357, 366
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	2 cut(s)	280, 327
PaqCI	CACCTGC	1 cut(s)	61
PasI	CCCWGGG	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	160, 195, 267
Psp6I	CCWGG	3 cut(s)	44, 114, 404
PspGI	CCWGG	3 cut(s)	44, 114, 404
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	48
PstI	CTGCAG	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	411
RsaI	GTAC	2 cut(s)	200, 298
RsaNI	GTAC	2 cut(s)	199, 297
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	3 cut(s)	159, 194, 266
Sau96I	GGNCC	1 cut(s)	48
ScrFI	CCNGG	4 cut(s)	46, 116, 125, 406
SetI	ASST	7 cut(s)	75, 102, 185, 213, 275, 322, 410
SfcI	CTRYAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	30, 285, 332, 372
SsiI	CCGC	1 cut(s)	159
StyD4I	CCNGG	4 cut(s)	44, 114, 123, 404
StyI	CCWWGG	2 cut(s)	88, 353
TasI	AATT	4 cut(s)	30, 285, 332, 372
TauI	GCSGC	1 cut(s)	161
TseFI	GTSAC	2 cut(s)	280, 327
TseI	GCWGC	2 cut(s)	193, 265
Tsp45I	GTSAC	2 cut(s)	280, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.