Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006898

Physical Location & Seq

Genomic Coordinates Reverse (-)

7826136 .. 7836741

Gene Structure 10606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCAAGATGGAGATTGTGGTGGAGAGCAATTCGGGGATTTTCCGGGACCAAGAGGGTTGGGGATAGGCAGGTGGTGTGGATGAGCCATGGGGATGAGGTGGCTAAGTTGCCCCAGGGGTTCCGGGTGTCAAGTGCTGGGTATGGTCACAATCTGAACTGTTCAAAGTTCTCAGCACCTAATACTTTAGTTCATTCATACCACAAAAAGATCAAATCACAAGGGAGAAACAAGCAACCTGGAATTTCCGGGGCCGAACTCGCAGGTCACTCGCCATTCACCACCGAGCGCTGCATCCTTCAAGCTCCGGCGAGCTACCCCGCCCAAAACTACAAAGCTGCAACAACTCCACCATCGAGACAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

122

Amino Acids

13.58

Weight (kDa)

10.61

Isoelectric Point (pI)

59.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63660 AT1G63660
fragaria_vesca	FvH4_5g27720 FvH4_5g27720
malus_domestica	MD06G1084500.v1.1 MD14G1105600.v1.1
prunus_persica	Prupe.5G100800_v2.0.a1
pyrus_communis	pycom06g08080 pycom14g10110
rosa_chinensis	RchiOBHm_Chr1g0356411 RchiOBHm_Chr7g0219471
rosa_laevigata	RLG00000002288 RLG00000005808 RLG00000011737
rosa_multiflora	Rmu_sc0003767.1_g000005 Rmu_sc0012443.1_g000008
rosa_roxburghii	Rroxscaffold_3G00240030 Rroxscaffold_5G00385240 Rroxscaffold_6G00391170
rosa_rugosa	Rorug07G0185400
rosa_samantha	Rh4DG422800 Rh7BG318200 Rh7CG345600 Rh7DG324200
rosa_wichuraiana	Rw1G013280 Rw7G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
Acc36I	ACCTGC	2 cut(s)	61, 254
AciI	CCGC	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	243
AfeI	AGCGCT	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	165, 302
AjnI	CCWGG	2 cut(s)	114, 238
AluBI	AGCT	3 cut(s)	305, 315, 338
AluI	AGCT	3 cut(s)	305, 315, 338
Alw26I	GTCTC	1 cut(s)	352
Aor51HI	AGCGCT	1 cut(s)	290
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	291, 338
ApoI	RAATTY	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	48, 252
AsuC2I	CCSGG	3 cut(s)	46, 125, 250
AsuHPI	GGTGA	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	278, 325
BccI	CCATC	2 cut(s)	3, 361
BcgI	CGANNNNNNTGC	2 cut(s)	252, 286
BciT130I	CCWGG	2 cut(s)	116, 240
BcnI	CCSGG	3 cut(s)	46, 125, 250
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	1 cut(s)	367
BfoI	RGCGCY	1 cut(s)	292
BfuAI	ACCTGC	2 cut(s)	61, 254
BisI	GCNGC	2 cut(s)	292, 339
BlsI	GCNGC	2 cut(s)	293, 340
Bme1390I	CCNGG	5 cut(s)	46, 116, 125, 240, 250
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	48, 252
BmiI	GGNNCC	3 cut(s)	49, 122, 253
BmrFI	CCNGG	5 cut(s)	46, 116, 125, 240, 250
BmsI	GCATC	1 cut(s)	303
BpuMI	CCSGG	3 cut(s)	46, 125, 250
BsaJI	CCNNGG	4 cut(s)	88, 114, 115, 249
BseBI	CCWGG	2 cut(s)	116, 240
BseDI	CCNNGG	4 cut(s)	88, 114, 115, 249
BseGI	GGATG	3 cut(s)	87, 100, 294
BseMII	CTCAG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	278, 325
BseYI	CCCAGC	1 cut(s)	137
BshFI	GGCC	1 cut(s)	254
BsiSI	CCGG	4 cut(s)	45, 124, 249, 308
BslFI	GGGAC	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	185
BspLI	GGNNCC	3 cut(s)	49, 122, 253
BspMI	ACCTGC	2 cut(s)	61, 254
BssECI	CCNNGG	4 cut(s)	88, 114, 115, 249
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	2 cut(s)	116, 240
Bst4CI	ACNGT	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	105, 172
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	3 cut(s)	87, 100, 294
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	2 cut(s)	116, 240
BstSCI	CCNGG	5 cut(s)	44, 114, 123, 238, 248
BstV1I	GCAGC	2 cut(s)	278, 325
BsuRI	GGCC	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	87, 100, 294
BveI	ACCTGC	2 cut(s)	61, 254
Cac8I	GCNNGC	1 cut(s)	313
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	48, 252
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	6 cut(s)	87, 104, 254, 305, 315, 338
CviKI_1	RGCY	6 cut(s)	87, 104, 254, 305, 315, 338
DdeI	CTNAG	2 cut(s)	105, 172
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	48
Eco47III	AGCGCT	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	114, 238
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	92
FaiI	YATR	3 cut(s)	90, 144, 199
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	88
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	292, 339
FokI	GGATG	3 cut(s)	94, 107, 281
Fsp4HI	GCNGC	2 cut(s)	292, 339
FspBI	CTAG	1 cut(s)	367
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	2 cut(s)	292, 339
GsaI	CCCAGC	1 cut(s)	141
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	4 cut(s)	45, 124, 249, 308
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HpaII	CCGG	4 cut(s)	45, 124, 249, 308
HphI	GGTGA	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	294, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	105, 172
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	2 cut(s)	278, 325
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	146, 266
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MluCI	AATT	2 cut(s)	30, 243
MnlI	CCTC	2 cut(s)	48, 91
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	4 cut(s)	45, 124, 249, 308
MspR9I	CCNGG	5 cut(s)	46, 116, 125, 240, 250
MvaI	CCWGG	2 cut(s)	116, 240
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	3 cut(s)	46, 125, 250
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	3 cut(s)	49, 122, 253
NmuCI	GTSAC	2 cut(s)	146, 266
PaqCI	CACCTGC	1 cut(s)	61
PasI	CCCWGGG	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	293, 340
Psp6I	CCWGG	2 cut(s)	114, 238
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	114, 238
PspN4I	GGNNCC	3 cut(s)	49, 122, 253
PspPI	GGNCC	2 cut(s)	48, 252
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	2 cut(s)	292, 339
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	2 cut(s)	48, 252
ScrFI	CCNGG	5 cut(s)	46, 116, 125, 240, 250
SetI	ASST	8 cut(s)	75, 102, 181, 241, 268, 307, 317, 340
SfaNI	GCATC	1 cut(s)	303
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	2 cut(s)	30, 243
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	1 cut(s)	367
StyD4I	CCNGG	5 cut(s)	44, 114, 123, 238, 248
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	356
TasI	AATT	2 cut(s)	30, 243
TseFI	GTSAC	2 cut(s)	146, 266
TseI	GCWGC	2 cut(s)	291, 338
Tsp45I	GTSAC	2 cut(s)	146, 266
TspDTI	ATGAA	2 cut(s)	182, 186
VpaK11BI	GGWCC	1 cut(s)	48
XapI	RAATTY	1 cut(s)	243
XspI	CTAG	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.