Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006898

Physical Location & Seq

Genomic Coordinates Reverse (-)

64335202 .. 64336691

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGCACATTGTATACGGAAACAGGCACGTGCAAGTTGAACTGATGAGCCATGGCGATGAGGTGGCCAAGCTGCCCCACGGGTTCGAGGTAGTGGGCAAGAGCCAGAAGGGGGTGGTCGCTGCTATCAAGAGCCGGTCAAGGAGGCTCTATGGGCTGCCGTACCACCCGGAGGGTGACACATTCACTGAAAAGGACGGAGTTTGGAGACACTTGGACACTTCCTTTTCGATGTTTGTGGAGTCACTCCAGCAGGATGGAATTGGATTAGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

91

Amino Acids

10.18

Weight (kDa)

6.57

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	3 - 60	2e-08	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63660 AT1G63660
fragaria_vesca	FvH4_5g27720 FvH4_5g27720
malus_domestica	MD06G1084500.v1.1 MD14G1105600.v1.1
prunus_persica	Prupe.5G100800_v2.0.a1
pyrus_communis	pycom06g08080 pycom14g10110
rosa_chinensis	RchiOBHm_Chr1g0356411 RchiOBHm_Chr7g0219471
rosa_laevigata	RLG00000002288 RLG00000005808 RLG00000011737
rosa_multiflora	Rmu_sc0003767.1_g000005 Rmu_sc0012443.1_g000008
rosa_roxburghii	Rroxscaffold_3G00240030 Rroxscaffold_5G00385240 Rroxscaffold_6G00391170
rosa_rugosa	Rorug07G0185400
rosa_samantha	Rh4DG422800 Rh7BG318200 Rh7CG345600 Rh7DG324200
rosa_wichuraiana	Rw1G013280 Rw7G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	63
AcvI	CACGTG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	109, 169
AgsI	TTSAA	1 cut(s)	38
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	3 cut(s)	70, 119, 154
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	65
BbrPI	CACGTG	1 cut(s)	28
BbvI	GCAGC	3 cut(s)	57, 106, 141
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	199
BisI	GCNGC	3 cut(s)	71, 120, 155
BlsI	GCNGC	3 cut(s)	72, 121, 156
Bme1390I	CCNGG	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	49, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 169
Bse118I	RCCGGY	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	49, 76
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	109, 169
BseXI	GCAGC	3 cut(s)	57, 106, 141
BshFI	GGCC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	133, 167
BslI	CCNNNNNNNGG	2 cut(s)	109, 169
BsmAI	GTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	65
Bsp19I	CCATGG	1 cut(s)	49
BspANI	GGCC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	49, 76
BssNAI	GTATAC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	49
Bst1107I	GTATAC	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	28
BstDSI	CCRYGG	2 cut(s)	49, 76
BstF5I	GGATG	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	3 cut(s)	57, 106, 141
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstZ17I	GTATAC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	2 cut(s)	49, 76
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	7 cut(s)	48, 65, 70, 102, 132, 145, 154
CviKI_1	RGCY	7 cut(s)	48, 65, 70, 102, 132, 145, 154
CviQI	GTAC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	1 cut(s)	53
FaiI	YATR	3 cut(s)	13, 51, 150
FatI	CATG	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	71, 120, 155
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	71, 120, 155
GluI	GCNGC	3 cut(s)	71, 120, 155
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	133, 167
Hin1II	CATG	1 cut(s)	53
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	2 cut(s)	133, 167
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	4, 31
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	53
LpnPI	CCDG	6 cut(s)	7, 116, 146, 180, 236, 260
Lsp1109I	GCAGC	3 cut(s)	57, 106, 141
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	173, 240
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	2 cut(s)	258, 271
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	4 cut(s)	52, 79, 135, 163
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	274
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	2 cut(s)	133, 167
MspR9I	CCNGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	151
NciI	CCSGG	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	49
NlaIII	CATG	1 cut(s)	53
NmuCI	GTSAC	2 cut(s)	173, 240
PkrI	GCNGC	3 cut(s)	72, 121, 156
PleI	GAGTC	1 cut(s)	247
PmaCI	CACGTG	1 cut(s)	28
PmlI	CACGTG	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	28
PspCI	CACGTG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	274
SatI	GCNGC	3 cut(s)	71, 120, 155
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	4 cut(s)	30, 63, 72, 90
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	258, 271
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	49
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	84, 227
TasI	AATT	2 cut(s)	258, 271
Tru1I	TTAA	1 cut(s)	274
Tru9I	TTAA	1 cut(s)	274
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	173, 240
TseI	GCWGC	3 cut(s)	70, 119, 154
Tsp45I	GTSAC	2 cut(s)	173, 240
TspGWI	ACGGA	2 cut(s)	30, 210
TspRI	CASTG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.