Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006898

Physical Location & Seq

Genomic Coordinates Forward (+)

1950619 .. 1951869

Gene Structure 1251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005808

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCACATTGTATACGGAAACAGCCACGTGCAAAGTTTGTCTGAGATACTAGTTTACACTAGACTCCAAACACATCATATGGATGTGGATAATTACGAAAGTCGATCATTAGGTCTCATTGGTCACATCACATGTAACTTTAACTCGAATGGAATTGCGACGTATGTTGAACTGATGAGCCATGGCGATGAGGTGGCCAAGCTGCCCCACGGGTTCGAGGTAGTGGGCAAGAGCCAGAAGGGGGTGGTGGCCGCCATCAAGAGCCGGTCAAGGAGGCTCTATGGGCTGCCGTACCACCCGGAGGGTGACACATTCGCTGAAAAGGACACAGTCTGGAGACACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

116

Amino Acids

13.0

Weight (kDa)

6.74

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	53 - 108	6.5e-08	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63660 AT1G63660
fragaria_vesca	FvH4_5g27720 FvH4_5g27720
malus_domestica	MD06G1084500.v1.1 MD14G1105600.v1.1
prunus_persica	Prupe.5G100800_v2.0.a1
pyrus_communis	pycom06g08080 pycom14g10110
rosa_chinensis	RchiOBHm_Chr1g0356411 RchiOBHm_Chr7g0219471
rosa_laevigata	RLG00000002288 RLG00000005808 RLG00000011737
rosa_multiflora	Rmu_sc0003767.1_g000005 Rmu_sc0012443.1_g000008
rosa_roxburghii	Rroxscaffold_3G00240030 Rroxscaffold_5G00385240 Rroxscaffold_6G00391170
rosa_rugosa	Rorug07G0185400
rosa_samantha	Rh4DG422800 Rh7BG318200 Rh7CG345600 Rh7DG324200
rosa_wichuraiana	Rw1G013280 Rw7G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	1 cut(s)	252
AcoI	YGGCCR	2 cut(s)	195, 249
AcvI	CACGTG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	241, 301
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	170
AhlI	ACTAGT	1 cut(s)	49
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	119, 331
AoxI	GGCC	2 cut(s)	195, 249
ApeKI	GCWGC	2 cut(s)	202, 286
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	197
BbrPI	CACGTG	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	189, 273
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	119, 331
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	2 cut(s)	50, 60
BisI	GCNGC	3 cut(s)	203, 252, 287
BlsI	GCNGC	3 cut(s)	204, 253, 288
Bme1390I	CCNGG	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	299
BsaAI	YACGTR	1 cut(s)	28
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	181, 208
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 301
Bse118I	RCCGGY	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	181, 208
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	2 cut(s)	241, 301
BseMII	CTCAG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	189, 273
BshFI	GGCC	2 cut(s)	197, 251
BsiSI	CCGG	2 cut(s)	265, 299
BslI	CCNNNNNNNGG	2 cut(s)	241, 301
BsmAI	GTCTC	2 cut(s)	119, 331
BsnI	GGCC	2 cut(s)	197, 251
Bso31I	GGTCTC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	104
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	197, 251
BspCNI	CTCAG	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	264
BssAI	RCCGGY	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	181, 208
BssMI	GATC	1 cut(s)	104
BssNAI	GTATAC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	181
Bst1107I	GTATAC	1 cut(s)	13
Bst4CI	ACNGT	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	2 cut(s)	181, 208
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	2 cut(s)	119, 331
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	189, 273
BstZ17I	GTATAC	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	197, 251
BtgI	CCRYGG	2 cut(s)	181, 208
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	2 cut(s)	132, 182
CviJI	RGCY	9 cut(s)	24, 180, 197, 202, 234, 251, 264, 277, 286
CviKI_1	RGCY	9 cut(s)	24, 180, 197, 202, 234, 251, 264, 277, 286
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
EaeI	YGGCCR	2 cut(s)	195, 249
Eco130I	CCWWGG	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	119
Eco72I	CACGTG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	2 cut(s)	135, 185
FaiI	YATR	7 cut(s)	13, 78, 80, 133, 165, 183, 282
FatI	CATG	2 cut(s)	131, 181
FauNDI	CATATG	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	203, 252, 287
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	3 cut(s)	203, 252, 287
FspBI	CTAG	2 cut(s)	50, 60
GluI	GCNGC	3 cut(s)	203, 252, 287
HaeIII	GGCC	2 cut(s)	197, 251
HapII	CCGG	2 cut(s)	265, 299
Hin1II	CATG	2 cut(s)	135, 185
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	2 cut(s)	265, 299
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	2 cut(s)	13, 55
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	2 cut(s)	259, 334
Hpy8I	GTNNAC	2 cut(s)	13, 55
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	2 cut(s)	27, 161
HpyCH4V	TGCA	2 cut(s)	4, 31
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	2 cut(s)	27, 161
Hsp92II	CATG	2 cut(s)	135, 185
Kzo9I	GATC	1 cut(s)	104
LpnPI	CCDG	4 cut(s)	248, 278, 312, 319
Lsp1109I	GCAGC	2 cut(s)	189, 273
MaeI	CTAG	2 cut(s)	50, 60
MaeII	ACGT	2 cut(s)	27, 161
MaeIII	GTNAC	3 cut(s)	122, 134, 305
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	2 cut(s)	91, 153
MluNI	TGGCCA	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	184, 211, 267, 295
Mox20I	TGGCCA	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	2 cut(s)	81, 186
Msp20I	TGGCCA	1 cut(s)	197
MspI	CCGG	2 cut(s)	265, 299
MspR9I	CCNGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	283
NciI	CCSGG	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	181
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	2 cut(s)	135, 185
NmuCI	GTSAC	2 cut(s)	122, 305
NspI	RCATGY	1 cut(s)	135
PciI	ACATGT	1 cut(s)	131
PflFI	GACNNNGTC	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	204, 253, 288
PleI	GAGTC	1 cut(s)	57
PmaCI	CACGTG	1 cut(s)	28
PmlI	CACGTG	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	57
Ppu21I	YACGTR	1 cut(s)	28
PscI	ACATGT	1 cut(s)	131
PspCI	CACGTG	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	329
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	2 cut(s)	81, 186
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	3 cut(s)	203, 252, 287
Sau3AI	GATC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	299
SetI	ASST	6 cut(s)	30, 115, 164, 195, 204, 222
SmiMI	CAYNNNNRTG	2 cut(s)	81, 186
SpeI	ACTAGT	1 cut(s)	49
Sse9I	AATT	2 cut(s)	91, 153
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	2 cut(s)	50, 60
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	2 cut(s)	30, 164
TaqI	TCGA	3 cut(s)	103, 146, 216
TasI	AATT	2 cut(s)	91, 153
TauI	GCSGC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	2 cut(s)	122, 305
TseI	GCWGC	2 cut(s)	202, 286
Tsp45I	GTSAC	2 cut(s)	122, 305
TspGWI	ACGGA	1 cut(s)	30
Tth111I	GACNNNGTC	1 cut(s)	329
XceI	RCATGY	1 cut(s)	135
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	2 cut(s)	50, 60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.