Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006898

Physical Location & Seq

Genomic Coordinates Forward (+)

12290693 .. 12293849

Gene Structure 3157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011737

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATAGCCTATCTAACAGTCGTTGCAAAGTTTGGTGCCTTGGTGGGTAATGTGGACACCCCTCTCTGCTTGTTGTTTCATTTACCACGGCCTTGGATTCTTCTGCTCAAGATTGAAGTGATTAAAGACTCGCAGCCTTGTCCAAAGTCAAATCTAAAGTTCAAAGTTCACAGGGTTGGCGGGGTGGTTAGGGCCAGAAGCAGGAGTATGGCAAGATGGAGATTGTGGTGGAGAGCAATTCGGGGATTTTTCGGGTCGAAGAGGGATGGGAATAGGCAGGTGGTGTGGATGAGCCATGGGGATGAGGTGGCTAAGTTTCCCCAAGGGTTCCGGGTGGTGGGGCAAAGCCAGCAGGGAGTGGTGGCCGCCATTGAAAGCCCTGAAAGGAGGTTCTATGGGCTTCAGTACCACCCTGAGCATATGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

143

Amino Acids

16.34

Weight (kDa)

10.74

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	87 - 140	5.7e-11	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63660 AT1G63660
fragaria_vesca	FvH4_5g27720 FvH4_5g27720
malus_domestica	MD06G1084500.v1.1 MD14G1105600.v1.1
prunus_persica	Prupe.5G100800_v2.0.a1
pyrus_communis	pycom06g08080 pycom14g10110
rosa_chinensis	RchiOBHm_Chr1g0356411 RchiOBHm_Chr7g0219471
rosa_laevigata	RLG00000002288 RLG00000005808 RLG00000011737
rosa_multiflora	Rmu_sc0003767.1_g000005 Rmu_sc0012443.1_g000008
rosa_roxburghii	Rroxscaffold_3G00240030 Rroxscaffold_5G00385240 Rroxscaffold_6G00391170
rosa_rugosa	Rorug07G0185400
rosa_samantha	Rh4DG422800 Rh7BG318200 Rh7CG345600 Rh7DG324200
rosa_wichuraiana	Rw1G013280 Rw7G027730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	268
Acc36I	ACCTGC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	2 cut(s)	180, 366
AcoI	YGGCCR	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	201, 337
AgsI	TTSAA	3 cut(s)	116, 163, 374
AoxI	GGCC	3 cut(s)	89, 192, 363
ApeKI	GCWGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	210, 260
BceAI	ACGGC	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	2 cut(s)	134, 366
BlsI	GCNGC	2 cut(s)	135, 367
Bme1390I	CCNGG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	37, 329
BmrFI	CCNGG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	332
BsaJI	CCNNGG	5 cut(s)	39, 86, 92, 295, 322
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 337
BseDI	CCNNGG	5 cut(s)	39, 86, 92, 295, 322
BseGI	GGATG	3 cut(s)	271, 294, 307
BseLI	CCNNNNNNNGG	2 cut(s)	201, 337
BseMII	CTCAG	1 cut(s)	405
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	3 cut(s)	91, 194, 365
BshNI	GGYRCC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	331
BslI	CCNNNNNNNGG	2 cut(s)	201, 337
BsnI	GGCC	3 cut(s)	91, 194, 365
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	2 cut(s)	180, 366
BspANI	GGCC	3 cut(s)	91, 194, 365
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	37, 329
BspMI	ACCTGC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	35
BssECI	CCNNGG	5 cut(s)	39, 86, 92, 295, 322
BssT1I	CCWWGG	4 cut(s)	39, 92, 295, 322
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	312, 414
BstDSI	CCRYGG	2 cut(s)	86, 295
BstF5I	GGATG	3 cut(s)	271, 294, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	93
BsuRI	GGCC	3 cut(s)	91, 194, 365
BtgI	CCRYGG	2 cut(s)	86, 295
BtsCI	GGATG	3 cut(s)	271, 294, 307
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	1 cut(s)	296
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	312, 414
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	4 cut(s)	39, 92, 295, 322
Eco57I	CTGAAG	1 cut(s)	386
EcoT14I	CCWWGG	4 cut(s)	39, 92, 295, 322
ErhI	CCWWGG	4 cut(s)	39, 92, 295, 322
FaeI	CATG	1 cut(s)	299
FaiI	YATR	5 cut(s)	209, 297, 396, 420, 422
FatI	CATG	1 cut(s)	295
FauI	CCCGC	1 cut(s)	173
FauNDI	CATATG	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	134, 366
FokI	GGATG	3 cut(s)	278, 301, 314
Fsp4HI	GCNGC	2 cut(s)	134, 366
GluI	GCNGC	2 cut(s)	134, 366
HaeIII	GGCC	3 cut(s)	91, 194, 365
HapII	CCGG	1 cut(s)	331
Hin1II	CATG	1 cut(s)	299
HinfI	GANTC	2 cut(s)	97, 128
HpaII	CCGG	1 cut(s)	331
Hpy166II	GTNNAC	2 cut(s)	55, 169
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	2 cut(s)	55, 169
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	26, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	2 cut(s)	312, 414
Hsp92II	CATG	1 cut(s)	299
LpnPI	CCDG	8 cut(s)	157, 187, 208, 263, 338, 344, 362, 393
Lsp1109I	GCAGC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	92, 271
MluCI	AATT	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	4 cut(s)	72, 255, 298, 381
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	349
NciI	CCSGG	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	295
NdeI	CATATG	1 cut(s)	420
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	2 cut(s)	37, 329
PaqCI	CACCTGC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	2 cut(s)	135, 367
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	37, 329
PspPI	GGNCC	1 cut(s)	192
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	134, 366
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	3 cut(s)	282, 309, 392
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	2 cut(s)	180, 366
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	4 cut(s)	39, 92, 295, 322
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	237
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.