Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G62000 AT5G62000 AT5G62000 AT5G62000 AT5G62000 |
| fragaria_vesca | FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 |
| malus_domestica | MD06G1132100.v1.1 MD14G1148500.v1.1 |
| prunus_persica | Prupe.5G143100_v2.0.a1 Prupe.5G143100_v2.0.a1 Prupe.5G143100_v2.0.a1 |
| pyrus_communis | pycom06g12370 pycom14g12320 pycom14g12330 |
| rosa_chinensis | RchiOBHm_Chr7g0188911 |
| rosa_laevigata | RLG00000004652 |
| rosa_multiflora | Rmu_co8328567.1_g000001 Rmu_ssc0000411.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00265950 |
| rosa_rugosa | Rorug06G0494400 Rorug06G0494500 |
| rosa_samantha | Rh7AG099400 Rh7BG101500 Rh7CG102800 Rh7DG101200 |
| rosa_wichuraiana | Rw7G008560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 277 |
| AccI | GTMKAC | 1 cut(s) | 887 |
| AclWI | GGATC | 2 cut(s) | 524, 921 |
| AcsI | RAATTY | 3 cut(s) | 307, 675, 939 |
| AcuI | CTGAAG | 1 cut(s) | 626 |
| AcyI | GRCGYC | 1 cut(s) | 274 |
| AdeI | CACNNNGTG | 1 cut(s) | 719 |
| AfaI | GTAC | 2 cut(s) | 739, 787 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 72, 488 |
| AflIII | ACRYGT | 1 cut(s) | 828 |
| AgsI | TTSAA | 4 cut(s) | 36, 171, 726, 796 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 607 |
| AjnI | CCWGG | 2 cut(s) | 414, 930 |
| AluBI | AGCT | 8 cut(s) | 252, 473, 502, 584, 668, 811, 818, 853 |
| AluI | AGCT | 8 cut(s) | 252, 473, 502, 584, 668, 811, 818, 853 |
| Alw21I | GWGCWC | 1 cut(s) | 366 |
| Alw26I | GTCTC | 2 cut(s) | 436, 864 |
| AlwI | GGATC | 2 cut(s) | 524, 921 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 533 |
| ApoI | RAATTY | 3 cut(s) | 307, 675, 939 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 818, 850 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 181 |
| AsuHPI | GGTGA | 5 cut(s) | 341, 393, 558, 860, 914 |
| AxyI | CCTNAGG | 1 cut(s) | 67 |
| BanII | GRGCYC | 1 cut(s) | 629 |
| Bbv12I | GWGCWC | 1 cut(s) | 366 |
| BccI | CCATC | 4 cut(s) | 14, 241, 406, 482 |
| BciT130I | CCWGG | 2 cut(s) | 416, 932 |
| BcoDI | GTCTC | 2 cut(s) | 436, 864 |
| BfaI | CTAG | 4 cut(s) | 312, 458, 729, 767 |
| Bme1390I | CCNGG | 2 cut(s) | 416, 932 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 607 |
| BmrFI | CCNGG | 2 cut(s) | 416, 932 |
| BmsI | GCATC | 3 cut(s) | 375, 688, 900 |
| Bpu10I | CCTNAGC | 1 cut(s) | 702 |
| Bsa29I | ATCGAT | 1 cut(s) | 925 |
| BsaHI | GRCGYC | 1 cut(s) | 274 |
| BsaI | GGTCTC | 1 cut(s) | 436 |
| BsaJI | CCNNGG | 3 cut(s) | 648, 741, 930 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 72, 488 |
| Bse1I | ACTGG | 1 cut(s) | 192 |
| Bse21I | CCTNAGG | 1 cut(s) | 67 |
| BseBI | CCWGG | 2 cut(s) | 416, 932 |
| BseCI | ATCGAT | 1 cut(s) | 925 |
| BseDI | CCNNGG | 3 cut(s) | 648, 741, 930 |
| BseGI | GGATG | 4 cut(s) | 10, 66, 387, 882 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 72, 488 |
| BseMII | CTCAG | 3 cut(s) | 81, 695, 716 |
| BseNI | ACTGG | 1 cut(s) | 192 |
| BseRI | GAGGAG | 1 cut(s) | 821 |
| BshVI | ATCGAT | 1 cut(s) | 925 |
| BsiHKAI | GWGCWC | 1 cut(s) | 366 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 72, 488 |
| BsmAI | GTCTC | 2 cut(s) | 436, 864 |
| BsmI | GAATGC | 3 cut(s) | 181, 214, 427 |
| Bso31I | GGTCTC | 1 cut(s) | 436 |
| Bsp1286I | GDGCHC | 2 cut(s) | 366, 629 |
| Bsp143I | GATC | 6 cut(s) | 157, 529, 781, 879, 922, 926 |
| Bsp19I | CCATGG | 1 cut(s) | 648 |
| BspCNI | CTCAG | 3 cut(s) | 80, 694, 715 |
| BspDI | ATCGAT | 1 cut(s) | 925 |
| BspPI | GGATC | 2 cut(s) | 524, 921 |
| BspTNI | GGTCTC | 1 cut(s) | 436 |
| BsrI | ACTGG | 1 cut(s) | 192 |
| BssECI | CCNNGG | 3 cut(s) | 648, 741, 930 |
| BssMI | GATC | 6 cut(s) | 157, 529, 781, 879, 922, 926 |
| BssNAI | GTATAC | 1 cut(s) | 888 |
| BssNI | GRCGYC | 1 cut(s) | 274 |
| BssT1I | CCWWGG | 2 cut(s) | 648, 741 |
| Bst1107I | GTATAC | 1 cut(s) | 888 |
| Bst2UI | CCWGG | 2 cut(s) | 416, 932 |
| Bst6I | CTCTTC | 1 cut(s) | 3 |
| BstACI | GRCGYC | 1 cut(s) | 274 |
| BstC8I | GCNNGC | 2 cut(s) | 662, 666 |
| BstDEI | CTNAG | 4 cut(s) | 67, 248, 681, 702 |
| BstDSI | CCRYGG | 1 cut(s) | 648 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 70 |
| BstF5I | GGATG | 4 cut(s) | 10, 66, 387, 882 |
| BstKTI | GATC | 6 cut(s) | 160, 532, 784, 882, 925, 929 |
| BstMAI | GTCTC | 2 cut(s) | 436, 864 |
| BstMBI | GATC | 6 cut(s) | 157, 529, 781, 879, 922, 926 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 670 |
| BstNI | CCWGG | 2 cut(s) | 416, 932 |
| BstNSI | RCATGY | 1 cut(s) | 832 |
| BstSCI | CCNGG | 2 cut(s) | 414, 930 |
| BstX2I | RGATCY | 1 cut(s) | 529 |
| BstYI | RGATCY | 1 cut(s) | 529 |
| BstZ17I | GTATAC | 1 cut(s) | 888 |
| Bsu15I | ATCGAT | 1 cut(s) | 925 |
| Bsu36I | CCTNAGG | 1 cut(s) | 67 |
| BsuTUI | ATCGAT | 1 cut(s) | 925 |
| BtgI | CCRYGG | 1 cut(s) | 648 |
| BtgZI | GCGATG | 1 cut(s) | 569 |
| BtsCI | GGATG | 4 cut(s) | 10, 66, 387, 882 |
| BtsIMutI | CAGTG | 1 cut(s) | 185 |
| Cac8I | GCNNGC | 2 cut(s) | 662, 666 |
| CaiI | CAGNNNCTG | 1 cut(s) | 533 |
| ClaI | ATCGAT | 1 cut(s) | 925 |
| Csp6I | GTAC | 2 cut(s) | 738, 786 |
| CviAII | CATG | 5 cut(s) | 77, 371, 467, 649, 829 |
| CviQI | GTAC | 2 cut(s) | 738, 786 |
| DdeI | CTNAG | 4 cut(s) | 67, 248, 681, 702 |
| DpnI | GATC | 6 cut(s) | 159, 531, 783, 881, 924, 928 |
| DpnII | GATC | 6 cut(s) | 157, 529, 781, 879, 922, 926 |
| DraIII | CACNNNGTG | 1 cut(s) | 719 |
| DriI | GACNNNNNGTC | 1 cut(s) | 607 |
| Eam1104I | CTCTTC | 1 cut(s) | 3 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 607 |
| EarI | CTCTTC | 1 cut(s) | 3 |
| Eco130I | CCWWGG | 2 cut(s) | 648, 741 |
| Eco24I | GRGCYC | 1 cut(s) | 629 |
| Eco31I | GGTCTC | 1 cut(s) | 436 |
| Eco57I | CTGAAG | 1 cut(s) | 626 |
| Eco81I | CCTNAGG | 1 cut(s) | 67 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 70 |
| EcoRI | GAATTC | 1 cut(s) | 307 |
| EcoRII | CCWGG | 2 cut(s) | 414, 930 |
| EcoT14I | CCWWGG | 2 cut(s) | 648, 741 |
| EcoT38I | GRGCYC | 1 cut(s) | 629 |
| ErhI | CCWWGG | 2 cut(s) | 648, 741 |
| FaeI | CATG | 5 cut(s) | 80, 374, 470, 652, 832 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 261, 293 |
| FatI | CATG | 5 cut(s) | 76, 370, 466, 648, 828 |
| FblI | GTMKAC | 1 cut(s) | 887 |
| FokI | GGATG | 4 cut(s) | 17, 73, 394, 889 |
| FriOI | GRGCYC | 1 cut(s) | 629 |
| FspBI | CTAG | 4 cut(s) | 312, 458, 729, 767 |
| Hin1I | GRCGYC | 1 cut(s) | 274 |
| Hin1II | CATG | 5 cut(s) | 80, 374, 470, 652, 832 |
| HinfI | GANTC | 5 cut(s) | 125, 257, 332, 563, 596 |
| HphI | GGTGA | 5 cut(s) | 341, 393, 558, 860, 914 |
| Hpy166II | GTNNAC | 3 cut(s) | 146, 748, 888 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 267, 601, 613 |
| Hpy188III | TCNNGA | 3 cut(s) | 36, 112, 312 |
| Hpy8I | GTNNAC | 3 cut(s) | 146, 748, 888 |
| HpyAV | CCTTC | 2 cut(s) | 191, 893 |
| HpyCH4IV | ACGT | 1 cut(s) | 274 |
| HpyCH4V | TGCA | 5 cut(s) | 214, 425, 536, 673, 764 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 670 |
| HpyF3I | CTNAG | 4 cut(s) | 67, 248, 681, 702 |
| HpySE526I | ACGT | 1 cut(s) | 274 |
| Hsp92I | GRCGYC | 1 cut(s) | 274 |
| Hsp92II | CATG | 5 cut(s) | 80, 374, 470, 652, 832 |
| Kzo9I | GATC | 6 cut(s) | 157, 529, 781, 879, 922, 926 |
| LmnI | GCTCC | 1 cut(s) | 808 |
| LweI | GCATC | 3 cut(s) | 375, 688, 900 |
| MaeI | CTAG | 4 cut(s) | 312, 458, 729, 767 |
| MaeII | ACGT | 1 cut(s) | 274 |
| MaeIII | GTNAC | 5 cut(s) | 228, 243, 453, 540, 564 |
| MalI | GATC | 6 cut(s) | 159, 531, 783, 881, 924, 928 |
| MboI | GATC | 6 cut(s) | 157, 529, 781, 879, 922, 926 |
| MboII | GAAGA | 4 cut(s) | 20, 25, 51, 327 |
| MflI | RGATCY | 1 cut(s) | 529 |
| MhlI | GDGCHC | 2 cut(s) | 366, 629 |
| MluCI | AATT | 8 cut(s) | 55, 166, 307, 376, 675, 821, 871, 939 |
| MlyI | GAGTC | 3 cut(s) | 251, 572, 605 |
| MmeI | TCCRAC | 1 cut(s) | 898 |
| MnlI | CCTC | 7 cut(s) | 66, 76, 139, 399, 405, 579, 799 |
| MroXI | GAANNNNTTC | 1 cut(s) | 181 |
| MslI | CAYNNNNRTG | 2 cut(s) | 369, 549 |
| MspR9I | CCNGG | 2 cut(s) | 416, 932 |
| Mva1269I | GAATGC | 3 cut(s) | 181, 214, 427 |
| MvaI | CCWGG | 2 cut(s) | 416, 932 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 670 |
| NcoI | CCATGG | 1 cut(s) | 648 |
| NdeII | GATC | 6 cut(s) | 157, 529, 781, 879, 922, 926 |
| NlaIII | CATG | 5 cut(s) | 80, 374, 470, 652, 832 |
| NmeAIII | GCCGAG | 1 cut(s) | 465 |
| NmuCI | GTSAC | 3 cut(s) | 243, 540, 564 |
| NspI | RCATGY | 1 cut(s) | 832 |
| PciI | ACATGT | 1 cut(s) | 828 |
| PctI | GAATGC | 3 cut(s) | 181, 214, 427 |
| PdmI | GAANNNNTTC | 1 cut(s) | 181 |
| PfeI | GAWTC | 2 cut(s) | 125, 332 |
| PleI | GAGTC | 3 cut(s) | 251, 571, 604 |
| PpsI | GAGTC | 3 cut(s) | 251, 571, 604 |
| PscI | ACATGT | 1 cut(s) | 828 |
| Psp6I | CCWGG | 2 cut(s) | 414, 930 |
| PspGI | CCWGG | 2 cut(s) | 414, 930 |
| PstNI | CAGNNNCTG | 1 cut(s) | 533 |
| PsuI | RGATCY | 1 cut(s) | 529 |
| RsaI | GTAC | 2 cut(s) | 739, 787 |
| RsaNI | GTAC | 2 cut(s) | 738, 786 |
| RseI | CAYNNNNRTG | 2 cut(s) | 369, 549 |
| Sau3AI | GATC | 6 cut(s) | 157, 529, 781, 879, 922, 926 |
| SchI | GAGTC | 3 cut(s) | 251, 572, 605 |
| ScrFI | CCNGG | 2 cut(s) | 416, 932 |
| SduI | GDGCHC | 2 cut(s) | 366, 629 |
| SfaNI | GCATC | 3 cut(s) | 375, 688, 900 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 369, 549 |
| Sse9I | AATT | 8 cut(s) | 55, 166, 307, 376, 675, 821, 871, 939 |
| SspMI | CTAG | 4 cut(s) | 312, 458, 729, 767 |
| StyD4I | CCNGG | 2 cut(s) | 414, 930 |
| StyI | CCWWGG | 2 cut(s) | 648, 741 |
| TaiI | ACGT | 1 cut(s) | 277 |
| TaqI | TCGA | 2 cut(s) | 156, 925 |
| TasI | AATT | 8 cut(s) | 55, 166, 307, 376, 675, 821, 871, 939 |
| TfiI | GAWTC | 2 cut(s) | 125, 332 |
| TscAI | CASTG | 1 cut(s) | 192 |
| TseFI | GTSAC | 3 cut(s) | 243, 540, 564 |
| Tsp45I | GTSAC | 3 cut(s) | 243, 540, 564 |
| TspDTI | ATGAA | 6 cut(s) | 21, 93, 359, 483, 572, 912 |
| TspRI | CASTG | 1 cut(s) | 192 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 70 |
| XapI | RAATTY | 3 cut(s) | 307, 675, 939 |
| XbaI | TCTAGA | 1 cut(s) | 311 |
| XceI | RCATGY | 1 cut(s) | 832 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 375, 870 |
| XmiI | GTMKAC | 1 cut(s) | 887 |
| XmnI | GAANNNNTTC | 1 cut(s) | 181 |
| XspI | CTAG | 4 cut(s) | 312, 458, 729, 767 |
| ZraI | GACGTC | 1 cut(s) | 275 |