Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G62000 AT5G62000 AT5G62000 AT5G62000 AT5G62000 |
| fragaria_vesca | FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 |
| malus_domestica | MD06G1132100.v1.1 MD14G1148500.v1.1 |
| prunus_persica | Prupe.5G143100_v2.0.a1 Prupe.5G143100_v2.0.a1 Prupe.5G143100_v2.0.a1 |
| pyrus_communis | pycom06g12370 pycom14g12320 pycom14g12330 |
| rosa_chinensis | RchiOBHm_Chr7g0188911 |
| rosa_laevigata | RLG00000004652 |
| rosa_multiflora | Rmu_co8328567.1_g000001 Rmu_ssc0000411.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00265950 |
| rosa_rugosa | Rorug06G0494400 Rorug06G0494500 |
| rosa_samantha | Rh7AG099400 Rh7BG101500 Rh7CG102800 Rh7DG101200 |
| rosa_wichuraiana | Rw7G008560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 253, 973 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2233 |
| AatII | GACGTC | 1 cut(s) | 8 |
| Acc16I | TGCGCA | 1 cut(s) | 390 |
| Acc36I | ACCTGC | 2 cut(s) | 253, 973 |
| AccB1I | GGYRCC | 2 cut(s) | 818, 2080 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 604, 1831 |
| AccBSI | CCGCTC | 1 cut(s) | 202 |
| AccI | GTMKAC | 4 cut(s) | 275, 675, 1080, 1187 |
| AccII | CGCG | 3 cut(s) | 107, 217, 1006 |
| AccIII | TCCGGA | 1 cut(s) | 2175 |
| AclWI | GGATC | 3 cut(s) | 1069, 1422, 2141 |
| AcoI | YGGCCR | 2 cut(s) | 141, 1196 |
| AcsI | RAATTY | 5 cut(s) | 901, 1130, 1438, 2060, 2159 |
| AcyI | GRCGYC | 3 cut(s) | 5, 272, 2081 |
| AfaI | GTAC | 5 cut(s) | 477, 728, 1089, 1327, 1683 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 111, 143, 195, 221, 604, 1015, 1712, 1831, 2270 |
| AflII | CTTAAG | 1 cut(s) | 881 |
| AflIII | ACRYGT | 1 cut(s) | 576 |
| AjnI | CCWGG | 2 cut(s) | 597, 1771 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 110, 142, 519, 551 |
| Alw21I | GWGCWC | 1 cut(s) | 518 |
| Alw26I | GTCTC | 3 cut(s) | 585, 1279, 1762 |
| AlwI | GGATC | 3 cut(s) | 1069, 1422, 2141 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1235 |
| Ama87I | CYCGRG | 1 cut(s) | 2222 |
| Aor13HI | TCCGGA | 1 cut(s) | 2175 |
| AoxI | GGCC | 4 cut(s) | 141, 197, 1001, 1196 |
| ApeKI | GCWGC | 3 cut(s) | 295, 1719, 1906 |
| ApoI | RAATTY | 5 cut(s) | 901, 1130, 1438, 2060, 2159 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2039, 2071 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 561, 1405 |
| AspLEI | GCGC | 5 cut(s) | 194, 391, 639, 1008, 2083 |
| AspS9I | GGNCC | 5 cut(s) | 197, 876, 1446, 2047, 2226 |
| AsuC2I | CCSGG | 5 cut(s) | 137, 196, 698, 2223, 2224 |
| AsuHPI | GGTGA | 6 cut(s) | 352, 800, 898, 1346, 2081, 2135 |
| AsuII | TTCGAA | 1 cut(s) | 783 |
| AvaI | CYCGRG | 1 cut(s) | 2222 |
| AvaII | GGWCC | 4 cut(s) | 876, 1446, 2047, 2226 |
| AxyI | CCTNAGG | 2 cut(s) | 246, 1279 |
| BalI | TGGCCA | 1 cut(s) | 1198 |
| BanI | GGYRCC | 2 cut(s) | 818, 2080 |
| BauI | CACGAG | 3 cut(s) | 203, 511, 2194 |
| Bbv12I | GWGCWC | 1 cut(s) | 518 |
| BbvCI | CCTCAGC | 1 cut(s) | 2268 |
| BbvI | GCAGC | 3 cut(s) | 307, 1706, 1918 |
| BccI | CCATC | 3 cut(s) | 885, 1633, 1706 |
| BceAI | ACGGC | 1 cut(s) | 106 |
| BciT130I | CCWGG | 2 cut(s) | 599, 1773 |
| BclI | TGATCA | 3 cut(s) | 342, 721, 1369 |
| BcnI | CCSGG | 5 cut(s) | 137, 196, 698, 2223, 2224 |
| BcoDI | GTCTC | 3 cut(s) | 585, 1279, 1762 |
| BfaI | CTAG | 1 cut(s) | 1950 |
| BfmI | CTRYAG | 1 cut(s) | 756 |
| BfoI | RGCGCY | 2 cut(s) | 640, 2084 |
| BfrI | CTTAAG | 1 cut(s) | 881 |
| BfuAI | ACCTGC | 2 cut(s) | 253, 973 |
| BlpI | GCTNAGC | 2 cut(s) | 291, 363 |
| BmcAI | AGTACT | 1 cut(s) | 1683 |
| Bme1390I | CCNGG | 7 cut(s) | 137, 196, 599, 698, 1773, 2223, 2224 |
| Bme18I | GGWCC | 4 cut(s) | 876, 1446, 2047, 2226 |
| BmeT110I | CYCGRG | 1 cut(s) | 2222 |
| BmgT120I | GGNCC | 5 cut(s) | 197, 876, 1446, 2047, 2226 |
| BmiI | GGNNCC | 8 cut(s) | 444, 661, 820, 878, 1020, 1497, 2082, 2227 |
| BmrFI | CCNGG | 7 cut(s) | 137, 196, 599, 698, 1773, 2223, 2224 |
| BmrI | ACTGGG | 1 cut(s) | 2249 |
| BmuI | ACTGGG | 1 cut(s) | 2249 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1852 |
| BpmI | CTGGAG | 2 cut(s) | 783, 1014 |
| Bpu10I | CCTNAGC | 2 cut(s) | 408, 2268 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 291, 363 |
| Bpu14I | TTCGAA | 1 cut(s) | 783 |
| BpuEI | CTTGAG | 1 cut(s) | 402 |
| BpuMI | CCSGG | 5 cut(s) | 137, 196, 698, 2223, 2224 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2186 |
| BsaHI | GRCGYC | 3 cut(s) | 5, 272, 2081 |
| BsaI | GGTCTC | 1 cut(s) | 1762 |
| BsaJI | CCNNGG | 8 cut(s) | 105, 597, 655, 686, 1812, 2150, 2221, 2222 |
| BsaWI | WCCGGW | 1 cut(s) | 2175 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1151, 1181 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 111, 143, 195, 221, 604, 1015, 1712, 1831, 2270 |
| Bse118I | RCCGGY | 1 cut(s) | 143 |
| Bse1I | ACTGG | 8 cut(s) | 305, 576, 820, 1257, 1274, 1416, 1679, 2244 |
| Bse21I | CCTNAGG | 2 cut(s) | 246, 1279 |
| Bse3DI | GCAATG | 2 cut(s) | 1513, 2265 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2186 |
| BseAI | TCCGGA | 1 cut(s) | 2175 |
| BseBI | CCWGG | 2 cut(s) | 599, 1773 |
| BseDI | CCNNGG | 8 cut(s) | 105, 597, 655, 686, 1812, 2150, 2221, 2222 |
| BseGI | GGATG | 7 cut(s) | 559, 768, 901, 1278, 1611, 2149, 2284 |
| BseJI | GATNNNNATC | 1 cut(s) | 2186 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 111, 143, 195, 221, 604, 1015, 1712, 1831, 2270 |
| BseMI | GCAATG | 2 cut(s) | 1513, 2265 |
| BseNI | ACTGG | 8 cut(s) | 305, 576, 820, 1257, 1274, 1416, 1679, 2244 |
| BseRI | GAGGAG | 4 cut(s) | 63, 66, 2216, 2261 |
| BseX3I | CGGCCG | 1 cut(s) | 141 |
| BseXI | GCAGC | 3 cut(s) | 307, 1706, 1918 |
| BseYI | CCCAGC | 1 cut(s) | 2254 |
| BsgI | GTGCAG | 3 cut(s) | 147, 951, 1281 |
| Bsh1236I | CGCG | 3 cut(s) | 107, 217, 1006 |
| Bsh1285I | CGRYCG | 1 cut(s) | 144 |
| BshFI | GGCC | 4 cut(s) | 143, 199, 1003, 1198 |
| BshNI | GGYRCC | 2 cut(s) | 818, 2080 |
| BsiEI | CGRYCG | 1 cut(s) | 144 |
| BsiHKAI | GWGCWC | 1 cut(s) | 518 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2222 |
| BsiSI | CCGG | 6 cut(s) | 137, 144, 195, 698, 2176, 2223 |
| BslFI | GGGAC | 5 cut(s) | 119, 264, 862, 1860, 2239 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 111, 143, 195, 221, 604, 1015, 1712, 1831, 2270 |
| BsmAI | GTCTC | 3 cut(s) | 585, 1279, 1762 |
| BsmFI | GGGAC | 5 cut(s) | 119, 264, 862, 1860, 2239 |
| BsmI | GAATGC | 5 cut(s) | 433, 563, 1405, 1654, 1734 |
| BsnI | GGCC | 4 cut(s) | 143, 199, 1003, 1198 |
| Bso31I | GGTCTC | 1 cut(s) | 1762 |
| BsoBI | CYCGRG | 1 cut(s) | 2222 |
| Bsp119I | TTCGAA | 1 cut(s) | 783 |
| Bsp1286I | GDGCHC | 1 cut(s) | 518 |
| Bsp13I | TCCGGA | 1 cut(s) | 2175 |
| Bsp143I | GATC | 8 cut(s) | 342, 721, 1061, 1369, 1414, 1555, 2002, 2146 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 291, 363 |
| Bsp19I | CCATGG | 1 cut(s) | 2150 |
| BspANI | GGCC | 4 cut(s) | 143, 199, 1003, 1198 |
| BspEI | TCCGGA | 1 cut(s) | 2175 |
| BspFNI | CGCG | 3 cut(s) | 107, 217, 1006 |
| BspLI | GGNNCC | 8 cut(s) | 444, 661, 820, 878, 1020, 1497, 2082, 2227 |
| BspMI | ACCTGC | 2 cut(s) | 253, 973 |
| BspPI | GGATC | 3 cut(s) | 1069, 1422, 2141 |
| BspQI | GCTCTTC | 1 cut(s) | 1948 |
| BspT104I | TTCGAA | 1 cut(s) | 783 |
| BspT107I | GGYRCC | 2 cut(s) | 818, 2080 |
| BspTI | CTTAAG | 1 cut(s) | 881 |
| BspTNI | GGTCTC | 1 cut(s) | 1762 |
| BsrBI | CCGCTC | 1 cut(s) | 202 |
| BsrDI | GCAATG | 2 cut(s) | 1513, 2265 |
| BsrFI | RCCGGY | 1 cut(s) | 143 |
| BsrI | ACTGG | 8 cut(s) | 305, 576, 820, 1257, 1274, 1416, 1679, 2244 |
| BssAI | RCCGGY | 1 cut(s) | 143 |
| BssECI | CCNNGG | 8 cut(s) | 105, 597, 655, 686, 1812, 2150, 2221, 2222 |
| BssMI | GATC | 8 cut(s) | 342, 721, 1061, 1369, 1414, 1555, 2002, 2146 |
| BssNI | GRCGYC | 3 cut(s) | 5, 272, 2081 |
| BssSI | CACGAG | 3 cut(s) | 203, 511, 2194 |
| BssT1I | CCWWGG | 3 cut(s) | 686, 1812, 2150 |
| Bst2BI | CACGAG | 3 cut(s) | 203, 511, 2194 |
| Bst2UI | CCWGG | 2 cut(s) | 599, 1773 |
| Bst4CI | ACNGT | 5 cut(s) | 122, 133, 211, 673, 1078 |
| Bst6I | CTCTTC | 4 cut(s) | 984, 1030, 1042, 1948 |
| BstACI | GRCGYC | 3 cut(s) | 5, 272, 2081 |
| BstAFI | CTTAAG | 1 cut(s) | 881 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 301, 2264 |
| BstBI | TTCGAA | 1 cut(s) | 783 |
| BstC8I | GCNNGC | 9 cut(s) | 145, 186, 190, 549, 951, 1200, 1724, 1911, 2265 |
| BstDSI | CCRYGG | 2 cut(s) | 105, 2150 |
| BstF5I | GGATG | 7 cut(s) | 559, 768, 901, 1278, 1611, 2149, 2284 |
| BstFNI | CGCG | 3 cut(s) | 107, 217, 1006 |
| BstH2I | RGCGCY | 2 cut(s) | 640, 2084 |
| BstHHI | GCGC | 5 cut(s) | 194, 391, 639, 1008, 2083 |
| BstKTI | GATC | 8 cut(s) | 345, 724, 1064, 1372, 1417, 1558, 2005, 2149 |
| BstMAI | GTCTC | 3 cut(s) | 585, 1279, 1762 |
| BstMBI | GATC | 8 cut(s) | 342, 721, 1061, 1369, 1414, 1555, 2002, 2146 |
| BstMCI | CGRYCG | 1 cut(s) | 144 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 161, 301, 965, 1199, 1259, 2264 |
| BstNI | CCWGG | 2 cut(s) | 599, 1773 |
| BstNSI | RCATGY | 3 cut(s) | 551, 580, 1913 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1852 |
| BstSCI | CCNGG | 7 cut(s) | 135, 194, 597, 696, 1771, 2221, 2222 |
| BstSFI | CTRYAG | 1 cut(s) | 756 |
| BstUI | CGCG | 3 cut(s) | 107, 217, 1006 |
| BstV1I | GCAGC | 3 cut(s) | 307, 1706, 1918 |
| BstZI | CGGCCG | 1 cut(s) | 141 |
| Bsu36I | CCTNAGG | 2 cut(s) | 246, 1279 |
| BsuRI | GGCC | 4 cut(s) | 143, 199, 1003, 1198 |
| BtgI | CCRYGG | 2 cut(s) | 105, 2150 |
| BtgZI | GCGATG | 1 cut(s) | 1446 |
| BtsCI | GGATG | 7 cut(s) | 559, 768, 901, 1278, 1611, 2149, 2284 |
| BtsI | GCAGTG | 1 cut(s) | 1236 |
| BtsIMutI | CAGTG | 8 cut(s) | 129, 312, 669, 1236, 1264, 1409, 1863, 2237 |
| BveI | ACCTGC | 2 cut(s) | 253, 973 |
| Cac8I | GCNNGC | 9 cut(s) | 145, 186, 190, 549, 951, 1200, 1724, 1911, 2265 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1235 |
| CfoI | GCGC | 5 cut(s) | 194, 391, 639, 1008, 2083 |
| Cfr10I | RCCGGY | 1 cut(s) | 143 |
| Cfr13I | GGNCC | 5 cut(s) | 197, 876, 1446, 2047, 2226 |
| Cfr42I | CCGCGG | 1 cut(s) | 108 |
| Cfr9I | CCCGGG | 1 cut(s) | 2222 |
| CseI | GACGC | 1 cut(s) | 261 |
| Csp6I | GTAC | 5 cut(s) | 476, 727, 1088, 1326, 1682 |
| CviQI | GTAC | 5 cut(s) | 476, 727, 1088, 1326, 1682 |
| DinI | GGCGCC | 1 cut(s) | 2082 |
| DpnI | GATC | 8 cut(s) | 344, 723, 1063, 1371, 1416, 1557, 2004, 2148 |
| DpnII | GATC | 8 cut(s) | 342, 721, 1061, 1369, 1414, 1555, 2002, 2146 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2233 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2233 |
| EaeI | YGGCCR | 2 cut(s) | 141, 1196 |
| EagI | CGGCCG | 1 cut(s) | 141 |
| Eam1104I | CTCTTC | 4 cut(s) | 984, 1030, 1042, 1948 |
| EarI | CTCTTC | 4 cut(s) | 984, 1030, 1042, 1948 |
| EciI | GGCGGA | 1 cut(s) | 447 |
| EclXI | CGGCCG | 1 cut(s) | 141 |
| Eco130I | CCWWGG | 3 cut(s) | 686, 1812, 2150 |
| Eco31I | GGTCTC | 1 cut(s) | 1762 |
| Eco47I | GGWCC | 4 cut(s) | 876, 1446, 2047, 2226 |
| Eco52I | CGGCCG | 1 cut(s) | 141 |
| Eco81I | CCTNAGG | 2 cut(s) | 246, 1279 |
| Eco88I | CYCGRG | 1 cut(s) | 2222 |
| EcoO109I | RGGNCCY | 2 cut(s) | 876, 2226 |
| EcoRI | GAATTC | 2 cut(s) | 1130, 1438 |
| EcoRII | CCWGG | 2 cut(s) | 597, 1771 |
| EcoT14I | CCWWGG | 3 cut(s) | 686, 1812, 2150 |
| EcoT22I | ATGCAT | 1 cut(s) | 1513 |
| EgeI | GGCGCC | 1 cut(s) | 2082 |
| EheI | GGCGCC | 1 cut(s) | 2082 |
| ErhI | CCWWGG | 3 cut(s) | 686, 1812, 2150 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1237, 1269, 1418, 1450 |
| FaqI | GGGAC | 5 cut(s) | 119, 264, 862, 1860, 2239 |
| FauNDI | CATATG | 1 cut(s) | 1674 |
| FbaI | TGATCA | 3 cut(s) | 342, 721, 1369 |
| FblI | GTMKAC | 4 cut(s) | 275, 675, 1080, 1187 |
| FokI | GGATG | 7 cut(s) | 566, 775, 908, 1285, 1618, 2156, 2291 |
| FspBI | CTAG | 1 cut(s) | 1950 |
| FspI | TGCGCA | 1 cut(s) | 390 |
| GlaI | GCGC | 5 cut(s) | 193, 390, 638, 1007, 2082 |
| GsaI | CCCAGC | 1 cut(s) | 2258 |
| GsuI | CTGGAG | 2 cut(s) | 783, 1014 |
| HaeII | RGCGCY | 2 cut(s) | 640, 2084 |
| HaeIII | GGCC | 4 cut(s) | 143, 199, 1003, 1198 |
| HapII | CCGG | 6 cut(s) | 137, 144, 195, 698, 2176, 2223 |
| HgaI | GACGC | 1 cut(s) | 261 |
| HhaI | GCGC | 5 cut(s) | 194, 391, 639, 1008, 2083 |
| Hin1I | GRCGYC | 3 cut(s) | 5, 272, 2081 |
| Hin6I | GCGC | 5 cut(s) | 192, 389, 637, 1006, 2081 |
| HinP1I | GCGC | 5 cut(s) | 192, 389, 637, 1006, 2081 |
| HincII | GTYRAC | 3 cut(s) | 276, 587, 1567 |
| HindII | GTYRAC | 3 cut(s) | 276, 587, 1567 |
| HinfI | GANTC | 9 cut(s) | 734, 863, 1034, 1166, 1481, 1639, 1784, 1817, 1883 |
| HpaI | GTTAAC | 1 cut(s) | 1567 |
| HpaII | CCGG | 6 cut(s) | 137, 144, 195, 698, 2176, 2223 |
| HphI | GGTGA | 6 cut(s) | 352, 800, 898, 1346, 2081, 2135 |
| Hpy188I | TCNGA | 9 cut(s) | 13, 508, 644, 656, 1171, 1491, 1822, 1888, 2211 |
| Hpy99I | CGWCG | 2 cut(s) | 92, 277 |
| HpyAV | CCTTC | 7 cut(s) | 215, 352, 433, 572, 779, 1415, 1486 |
| HpyCH4III | ACNGT | 5 cut(s) | 122, 133, 211, 673, 1078 |
| HpyCH4IV | ACGT | 2 cut(s) | 5, 2234 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 161, 301, 965, 1199, 1259, 2264 |
| HpySE526I | ACGT | 2 cut(s) | 5, 2234 |
| Hsp92I | GRCGYC | 3 cut(s) | 5, 272, 2081 |
| HspAI | GCGC | 5 cut(s) | 192, 389, 637, 1006, 2081 |
| KasI | GGCGCC | 1 cut(s) | 2080 |
| Kpn2I | TCCGGA | 1 cut(s) | 2175 |
| KroI | GCCGGC | 1 cut(s) | 143 |
| KroNI | GCCGGC | 1 cut(s) | 145 |
| Ksp22I | TGATCA | 3 cut(s) | 342, 721, 1369 |
| KspAI | GTTAAC | 1 cut(s) | 1567 |
| KspI | CCGCGG | 1 cut(s) | 108 |
| Kzo9I | GATC | 8 cut(s) | 342, 721, 1061, 1369, 1414, 1555, 2002, 2146 |
| LguI | GCTCTTC | 1 cut(s) | 1948 |
| LmnI | GCTCC | 4 cut(s) | 175, 226, 802, 964 |
| Lsp1109I | GCAGC | 3 cut(s) | 307, 1706, 1918 |
| MaeI | CTAG | 1 cut(s) | 1950 |
| MaeII | ACGT | 2 cut(s) | 5, 2234 |
| MaeIII | GTNAC | 7 cut(s) | 205, 394, 1072, 1452, 1467, 2123, 2235 |
| MalI | GATC | 8 cut(s) | 344, 723, 1063, 1371, 1416, 1557, 2004, 2148 |
| MbiI | CCGCTC | 1 cut(s) | 202 |
| MboI | GATC | 8 cut(s) | 342, 721, 1061, 1369, 1414, 1555, 2002, 2146 |
| MfeI | CAATTG | 1 cut(s) | 2051 |
| MhlI | GDGCHC | 1 cut(s) | 518 |
| MlsI | TGGCCA | 1 cut(s) | 1198 |
| MluNI | TGGCCA | 1 cut(s) | 1198 |
| Mly113I | GGCGCC | 1 cut(s) | 2081 |
| MlyI | GAGTC | 7 cut(s) | 743, 1028, 1175, 1475, 1648, 1826, 1892 |
| MmeI | TCCRAC | 3 cut(s) | 617, 667, 1812 |
| Mox20I | TGGCCA | 1 cut(s) | 1198 |
| Mph1103I | ATGCAT | 1 cut(s) | 1513 |
| MroI | TCCGGA | 1 cut(s) | 2175 |
| MroNI | GCCGGC | 1 cut(s) | 143 |
| MroXI | GAANNNNTTC | 2 cut(s) | 561, 1405 |
| MscI | TGGCCA | 1 cut(s) | 1198 |
| MseI | TTAA | 8 cut(s) | 497, 771, 882, 1431, 1566, 1701, 1878, 2231 |
| MslI | CAYNNNNRTG | 2 cut(s) | 552, 627 |
| Msp20I | TGGCCA | 1 cut(s) | 1198 |
| MspA1I | CMGCKG | 2 cut(s) | 107, 1178 |
| MspCI | CTTAAG | 1 cut(s) | 881 |
| MspI | CCGG | 6 cut(s) | 137, 144, 195, 698, 2176, 2223 |
| MspR9I | CCNGG | 7 cut(s) | 137, 196, 599, 698, 1773, 2223, 2224 |
| MunI | CAATTG | 1 cut(s) | 2051 |
| Mva1269I | GAATGC | 5 cut(s) | 433, 563, 1405, 1654, 1734 |
| MvaI | CCWGG | 2 cut(s) | 599, 1773 |
| MvnI | CGCG | 3 cut(s) | 107, 217, 1006 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 161, 301, 965, 1199, 1259, 2264 |
| NaeI | GCCGGC | 1 cut(s) | 145 |
| NarI | GGCGCC | 1 cut(s) | 2081 |
| NciI | CCSGG | 5 cut(s) | 137, 196, 698, 2223, 2224 |
| NcoI | CCATGG | 1 cut(s) | 2150 |
| NdeI | CATATG | 1 cut(s) | 1674 |
| NdeII | GATC | 8 cut(s) | 342, 721, 1061, 1369, 1414, 1555, 2002, 2146 |
| NgoMIV | GCCGGC | 1 cut(s) | 143 |
| NlaIV | GGNNCC | 8 cut(s) | 444, 661, 820, 878, 1020, 1497, 2082, 2227 |
| NmuCI | GTSAC | 5 cut(s) | 205, 394, 1467, 2123, 2235 |
| NsbI | TGCGCA | 1 cut(s) | 390 |
| NsiI | ATGCAT | 1 cut(s) | 1513 |
| NspI | RCATGY | 3 cut(s) | 551, 580, 1913 |
| NspV | TTCGAA | 1 cut(s) | 783 |
| PaeI | GCATGC | 2 cut(s) | 551, 1913 |
| PaqCI | CACCTGC | 2 cut(s) | 253, 973 |
| PciI | ACATGT | 1 cut(s) | 576 |
| PciSI | GCTCTTC | 1 cut(s) | 1948 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 17 |
| PctI | GAATGC | 5 cut(s) | 433, 563, 1405, 1654, 1734 |
| PdiI | GCCGGC | 1 cut(s) | 145 |
| PdmI | GAANNNNTTC | 2 cut(s) | 561, 1405 |
| PfeI | GAWTC | 2 cut(s) | 863, 1784 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 604, 1831 |
| PleI | GAGTC | 7 cut(s) | 742, 1028, 1174, 1475, 1647, 1825, 1891 |
| PluTI | GGCGCC | 1 cut(s) | 2084 |
| PpsI | GAGTC | 7 cut(s) | 742, 1028, 1174, 1475, 1647, 1825, 1891 |
| PpuMI | RGGWCCY | 2 cut(s) | 876, 2226 |
| PscI | ACATGT | 1 cut(s) | 576 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1852 |
| Psp5II | RGGWCCY | 2 cut(s) | 876, 2226 |
| Psp6I | CCWGG | 2 cut(s) | 597, 1771 |
| PspFI | CCCAGC | 1 cut(s) | 2254 |
| PspGI | CCWGG | 2 cut(s) | 597, 1771 |
| PspN4I | GGNNCC | 8 cut(s) | 444, 661, 820, 878, 1020, 1497, 2082, 2227 |
| PspPI | GGNCC | 5 cut(s) | 197, 876, 1446, 2047, 2226 |
| PspPPI | RGGWCCY | 2 cut(s) | 876, 2226 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1235 |
| PvuII | CAGCTG | 1 cut(s) | 1178 |
| RsaI | GTAC | 5 cut(s) | 477, 728, 1089, 1327, 1683 |
| RsaNI | GTAC | 5 cut(s) | 476, 727, 1088, 1326, 1682 |
| RseI | CAYNNNNRTG | 2 cut(s) | 552, 627 |
| SacII | CCGCGG | 1 cut(s) | 108 |
| SalI | GTCGAC | 1 cut(s) | 274 |
| SapI | GCTCTTC | 1 cut(s) | 1948 |
| SaqAI | TTAA | 8 cut(s) | 497, 771, 882, 1431, 1566, 1701, 1878, 2231 |
| Sau3AI | GATC | 8 cut(s) | 342, 721, 1061, 1369, 1414, 1555, 2002, 2146 |
| Sau96I | GGNCC | 5 cut(s) | 197, 876, 1446, 2047, 2226 |
| ScaI | AGTACT | 1 cut(s) | 1683 |
| SchI | GAGTC | 7 cut(s) | 743, 1028, 1175, 1475, 1648, 1826, 1892 |
| ScrFI | CCNGG | 7 cut(s) | 137, 196, 599, 698, 1773, 2223, 2224 |
| SduI | GDGCHC | 1 cut(s) | 518 |
| SfcI | CTRYAG | 1 cut(s) | 756 |
| SfoI | GGCGCC | 1 cut(s) | 2082 |
| Sfr303I | CCGCGG | 1 cut(s) | 108 |
| SfuI | TTCGAA | 1 cut(s) | 783 |
| SgrBI | CCGCGG | 1 cut(s) | 108 |
| SinI | GGWCC | 4 cut(s) | 876, 1446, 2047, 2226 |
| SmaI | CCCGGG | 1 cut(s) | 2224 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 552, 627 |
| SmlI | CTYRAG | 2 cut(s) | 417, 881 |
| SmoI | CTYRAG | 2 cut(s) | 417, 881 |
| SphI | GCATGC | 2 cut(s) | 551, 1913 |
| SspDI | GGCGCC | 1 cut(s) | 2080 |
| SspMI | CTAG | 1 cut(s) | 1950 |
| StyD4I | CCNGG | 7 cut(s) | 135, 194, 597, 696, 1771, 2221, 2222 |
| StyI | CCWWGG | 3 cut(s) | 686, 1812, 2150 |
| TaaI | ACNGT | 5 cut(s) | 122, 133, 211, 673, 1078 |
| TaiI | ACGT | 2 cut(s) | 8, 2237 |
| TaqI | TCGA | 5 cut(s) | 20, 258, 275, 783, 1136 |
| TatI | WGTACW | 4 cut(s) | 475, 726, 1087, 1681 |
| TauI | GCSGC | 7 cut(s) | 107, 143, 202, 217, 463, 547, 1006 |
| TfiI | GAWTC | 2 cut(s) | 863, 1784 |
| Tru1I | TTAA | 8 cut(s) | 497, 771, 882, 1431, 1566, 1701, 1878, 2231 |
| Tru9I | TTAA | 8 cut(s) | 497, 771, 882, 1431, 1566, 1701, 1878, 2231 |
| TscAI | CASTG | 8 cut(s) | 136, 312, 676, 1236, 1264, 1416, 1863, 2244 |
| TseFI | GTSAC | 5 cut(s) | 205, 394, 1467, 2123, 2235 |
| TseI | GCWGC | 3 cut(s) | 295, 1719, 1906 |
| Tsp45I | GTSAC | 5 cut(s) | 205, 394, 1467, 2123, 2235 |
| TspGWI | ACGGA | 2 cut(s) | 48, 188 |
| TspMI | CCCGGG | 1 cut(s) | 2222 |
| TspRI | CASTG | 8 cut(s) | 136, 312, 676, 1236, 1264, 1416, 1863, 2244 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 604, 1831 |
| Vha464I | CTTAAG | 1 cut(s) | 881 |
| VpaK11BI | GGWCC | 4 cut(s) | 876, 1446, 2047, 2226 |
| XapI | RAATTY | 5 cut(s) | 901, 1130, 1438, 2060, 2159 |
| XceI | RCATGY | 3 cut(s) | 551, 580, 1913 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2091 |
| XmaI | CCCGGG | 1 cut(s) | 2222 |
| XmiI | GTMKAC | 4 cut(s) | 275, 675, 1080, 1187 |
| XmnI | GAANNNNTTC | 2 cut(s) | 561, 1405 |
| XspI | CTAG | 1 cut(s) | 1950 |
| ZraI | GACGTC | 1 cut(s) | 6 |
| ZrmI | AGTACT | 1 cut(s) | 1683 |
| Zsp2I | ATGCAT | 1 cut(s) | 1513 |