Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G62000 AT5G62000 AT5G62000 AT5G62000 AT5G62000 |
| fragaria_vesca | FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 |
| malus_domestica | MD06G1132100.v1.1 MD14G1148500.v1.1 |
| prunus_persica | Prupe.5G143100_v2.0.a1 Prupe.5G143100_v2.0.a1 Prupe.5G143100_v2.0.a1 |
| pyrus_communis | pycom06g12370 pycom14g12320 pycom14g12330 |
| rosa_chinensis | RchiOBHm_Chr7g0188911 |
| rosa_laevigata | RLG00000004652 |
| rosa_multiflora | Rmu_co8328567.1_g000001 Rmu_ssc0000411.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00265950 |
| rosa_rugosa | Rorug06G0494400 Rorug06G0494500 |
| rosa_samantha | Rh7AG099400 Rh7BG101500 Rh7CG102800 Rh7DG101200 |
| rosa_wichuraiana | Rw7G008560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 244, 1189 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2449 |
| AatII | GACGTC | 1 cut(s) | 8 |
| Acc16I | TGCGCA | 1 cut(s) | 381 |
| Acc36I | ACCTGC | 2 cut(s) | 244, 1189 |
| AccB1I | GGYRCC | 1 cut(s) | 1034 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 595, 2047 |
| AccBSI | CCGCTC | 1 cut(s) | 193 |
| AccI | GTMKAC | 4 cut(s) | 266, 891, 1296, 1403 |
| AccII | CGCG | 3 cut(s) | 98, 208, 1222 |
| AccIII | TCCGGA | 1 cut(s) | 2391 |
| AclWI | GGATC | 3 cut(s) | 1285, 1638, 2357 |
| AcoI | YGGCCR | 3 cut(s) | 132, 1208, 1412 |
| AcsI | RAATTY | 6 cut(s) | 1117, 1346, 1643, 1654, 2276, 2375 |
| AcuI | CTGAAG | 1 cut(s) | 792 |
| AcyI | GRCGYC | 3 cut(s) | 5, 263, 1554 |
| AfaI | GTAC | 4 cut(s) | 468, 843, 944, 1899 |
| AflII | CTTAAG | 1 cut(s) | 1097 |
| AflIII | ACRYGT | 2 cut(s) | 567, 1561 |
| AjiI | CACGTC | 1 cut(s) | 776 |
| AjnI | CCWGG | 2 cut(s) | 588, 2437 |
| AleI | CACNNNNGTG | 1 cut(s) | 837 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 101, 133, 510, 542 |
| Alw21I | GWGCWC | 2 cut(s) | 509, 759 |
| Alw26I | GTCTC | 2 cut(s) | 576, 1495 |
| AlwI | GGATC | 3 cut(s) | 1285, 1638, 2357 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1451 |
| Aor13HI | TCCGGA | 1 cut(s) | 2391 |
| AoxI | GGCC | 7 cut(s) | 132, 188, 1208, 1217, 1412, 1661, 2295 |
| ApeKI | GCWGC | 2 cut(s) | 1935, 2122 |
| ApoI | RAATTY | 6 cut(s) | 1117, 1346, 1643, 1654, 2276, 2375 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2255, 2287 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 552, 1621 |
| AspLEI | GCGC | 4 cut(s) | 185, 382, 630, 1224 |
| AspS9I | GGNCC | 7 cut(s) | 188, 1092, 1662, 2063, 2263, 2296, 2442 |
| AsuC2I | CCSGG | 2 cut(s) | 128, 187 |
| AsuHPI | GGTGA | 7 cut(s) | 343, 755, 1016, 1114, 1562, 2297, 2351 |
| AsuII | TTCGAA | 1 cut(s) | 999 |
| AvaII | GGWCC | 4 cut(s) | 1092, 2063, 2263, 2442 |
| AxyI | CCTNAGG | 2 cut(s) | 237, 1495 |
| BalI | TGGCCA | 1 cut(s) | 1414 |
| BanI | GGYRCC | 1 cut(s) | 1034 |
| BanII | GRGCYC | 1 cut(s) | 759 |
| BauI | CACGAG | 2 cut(s) | 194, 502 |
| Bbv12I | GWGCWC | 2 cut(s) | 509, 759 |
| BbvCI | CCTCAGC | 1 cut(s) | 2484 |
| BbvI | GCAGC | 2 cut(s) | 1922, 2134 |
| BccI | CCATC | 4 cut(s) | 811, 1101, 1849, 1922 |
| BceAI | ACGGC | 2 cut(s) | 97, 1223 |
| BciT130I | CCWGG | 2 cut(s) | 590, 2439 |
| BclI | TGATCA | 3 cut(s) | 333, 1585, 1771 |
| BcnI | CCSGG | 2 cut(s) | 128, 187 |
| BcoDI | GTCTC | 2 cut(s) | 576, 1495 |
| BfaI | CTAG | 2 cut(s) | 819, 2166 |
| BfmI | CTRYAG | 1 cut(s) | 972 |
| BfoI | RGCGCY | 1 cut(s) | 631 |
| BfrI | CTTAAG | 1 cut(s) | 1097 |
| BfuAI | ACCTGC | 2 cut(s) | 244, 1189 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1216 |
| BisI | GCNGC | 9 cut(s) | 96, 132, 191, 206, 452, 536, 1220, 1936, 2123 |
| BlpI | GCTNAGC | 1 cut(s) | 354 |
| BlsI | GCNGC | 9 cut(s) | 97, 133, 192, 207, 453, 537, 1221, 1937, 2124 |
| BmcAI | AGTACT | 1 cut(s) | 1899 |
| Bme1390I | CCNGG | 4 cut(s) | 128, 187, 590, 2439 |
| Bme18I | GGWCC | 4 cut(s) | 1092, 2063, 2263, 2442 |
| BmgBI | CACGTC | 1 cut(s) | 776 |
| BmgT120I | GGNCC | 7 cut(s) | 188, 1092, 1662, 2063, 2263, 2296, 2442 |
| BmrFI | CCNGG | 4 cut(s) | 128, 187, 590, 2439 |
| BmrI | ACTGGG | 1 cut(s) | 2465 |
| BmuI | ACTGGG | 1 cut(s) | 2465 |
| BpmI | CTGGAG | 2 cut(s) | 999, 1230 |
| Bpu10I | CCTNAGC | 2 cut(s) | 399, 2484 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 354 |
| Bpu14I | TTCGAA | 1 cut(s) | 999 |
| BpuEI | CTTGAG | 1 cut(s) | 393 |
| BpuMI | CCSGG | 2 cut(s) | 128, 187 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2402 |
| BsaHI | GRCGYC | 3 cut(s) | 5, 263, 1554 |
| BsaWI | WCCGGW | 1 cut(s) | 2391 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1367, 1397 |
| Bse118I | RCCGGY | 1 cut(s) | 134 |
| Bse1I | ACTGG | 9 cut(s) | 296, 567, 849, 1036, 1473, 1490, 1632, 1993, 2460 |
| Bse21I | CCTNAGG | 2 cut(s) | 237, 1495 |
| Bse3DI | GCAATG | 4 cut(s) | 786, 802, 1729, 2481 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2402 |
| BseAI | TCCGGA | 1 cut(s) | 2391 |
| BseBI | CCWGG | 2 cut(s) | 590, 2439 |
| BseGI | GGATG | 6 cut(s) | 550, 727, 1117, 1494, 1827, 2500 |
| BseJI | GATNNNNATC | 1 cut(s) | 2402 |
| BseMI | GCAATG | 4 cut(s) | 786, 802, 1729, 2481 |
| BseMII | CTCAG | 8 cut(s) | 251, 345, 390, 510, 909, 1509, 2132, 2475 |
| BseNI | ACTGG | 9 cut(s) | 296, 567, 849, 1036, 1473, 1490, 1632, 1993, 2460 |
| BseRI | GAGGAG | 4 cut(s) | 54, 57, 2432, 2477 |
| BseX3I | CGGCCG | 1 cut(s) | 132 |
| BseXI | GCAGC | 2 cut(s) | 1922, 2134 |
| BseYI | CCCAGC | 1 cut(s) | 2470 |
| BsgI | GTGCAG | 3 cut(s) | 138, 1167, 1497 |
| Bsh1236I | CGCG | 3 cut(s) | 98, 208, 1222 |
| Bsh1285I | CGRYCG | 1 cut(s) | 135 |
| BshFI | GGCC | 7 cut(s) | 134, 190, 1210, 1219, 1414, 1663, 2297 |
| BshNI | GGYRCC | 1 cut(s) | 1034 |
| BsiEI | CGRYCG | 1 cut(s) | 135 |
| BsiHKAI | GWGCWC | 2 cut(s) | 509, 759 |
| BsiSI | CCGG | 4 cut(s) | 128, 135, 186, 2392 |
| BslFI | GGGAC | 6 cut(s) | 110, 255, 1078, 1555, 2076, 2455 |
| BsmAI | GTCTC | 2 cut(s) | 576, 1495 |
| BsmFI | GGGAC | 6 cut(s) | 110, 255, 1078, 1555, 2076, 2455 |
| BsmI | GAATGC | 5 cut(s) | 424, 554, 1621, 1870, 1950 |
| BsnI | GGCC | 7 cut(s) | 134, 190, 1210, 1219, 1414, 1663, 2297 |
| Bsp119I | TTCGAA | 1 cut(s) | 999 |
| Bsp1286I | GDGCHC | 2 cut(s) | 509, 759 |
| Bsp13I | TCCGGA | 1 cut(s) | 2391 |
| Bsp143I | GATC | 8 cut(s) | 333, 937, 1277, 1585, 1630, 1771, 2218, 2362 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 354 |
| BspANI | GGCC | 7 cut(s) | 134, 190, 1210, 1219, 1414, 1663, 2297 |
| BspCNI | CTCAG | 8 cut(s) | 250, 346, 391, 509, 910, 1508, 2131, 2476 |
| BspEI | TCCGGA | 1 cut(s) | 2391 |
| BspFNI | CGCG | 3 cut(s) | 98, 208, 1222 |
| BspMI | ACCTGC | 2 cut(s) | 244, 1189 |
| BspPI | GGATC | 3 cut(s) | 1285, 1638, 2357 |
| BspQI | GCTCTTC | 1 cut(s) | 2164 |
| BspT104I | TTCGAA | 1 cut(s) | 999 |
| BspT107I | GGYRCC | 1 cut(s) | 1034 |
| BspTI | CTTAAG | 1 cut(s) | 1097 |
| BsrBI | CCGCTC | 1 cut(s) | 193 |
| BsrDI | GCAATG | 4 cut(s) | 786, 802, 1729, 2481 |
| BsrFI | RCCGGY | 1 cut(s) | 134 |
| BsrI | ACTGG | 9 cut(s) | 296, 567, 849, 1036, 1473, 1490, 1632, 1993, 2460 |
| BssAI | RCCGGY | 1 cut(s) | 134 |
| BssMI | GATC | 8 cut(s) | 333, 937, 1277, 1585, 1630, 1771, 2218, 2362 |
| BssNI | GRCGYC | 3 cut(s) | 5, 263, 1554 |
| BssSI | CACGAG | 2 cut(s) | 194, 502 |
| BssT1I | CCWWGG | 4 cut(s) | 656, 835, 902, 2028 |
| Bst2BI | CACGAG | 2 cut(s) | 194, 502 |
| Bst2UI | CCWGG | 2 cut(s) | 590, 2439 |
| Bst4CI | ACNGT | 5 cut(s) | 113, 124, 202, 889, 1294 |
| Bst6I | CTCTTC | 4 cut(s) | 1200, 1246, 1258, 2164 |
| BstACI | GRCGYC | 3 cut(s) | 5, 263, 1554 |
| BstAFI | CTTAAG | 1 cut(s) | 1097 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 722, 860, 2480 |
| BstBI | TTCGAA | 1 cut(s) | 999 |
| BstDSI | CCRYGG | 3 cut(s) | 96, 1205, 2366 |
| BstF5I | GGATG | 6 cut(s) | 550, 727, 1117, 1494, 1827, 2500 |
| BstFNI | CGCG | 3 cut(s) | 98, 208, 1222 |
| BstH2I | RGCGCY | 1 cut(s) | 631 |
| BstHHI | GCGC | 4 cut(s) | 185, 382, 630, 1224 |
| BstKTI | GATC | 8 cut(s) | 336, 940, 1280, 1588, 1633, 1774, 2221, 2365 |
| BstMAI | GTCTC | 2 cut(s) | 576, 1495 |
| BstMBI | GATC | 8 cut(s) | 333, 937, 1277, 1585, 1630, 1771, 2218, 2362 |
| BstMCI | CGRYCG | 1 cut(s) | 135 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 152, 722, 860, 1181, 1216, 1415, 2480 |
| BstNI | CCWGG | 2 cut(s) | 590, 2439 |
| BstNSI | RCATGY | 6 cut(s) | 542, 571, 832, 863, 1565, 2129 |
| BstSCI | CCNGG | 4 cut(s) | 126, 185, 588, 2437 |
| BstSFI | CTRYAG | 1 cut(s) | 972 |
| BstUI | CGCG | 3 cut(s) | 98, 208, 1222 |
| BstV1I | GCAGC | 2 cut(s) | 1922, 2134 |
| BstZI | CGGCCG | 1 cut(s) | 132 |
| Bsu36I | CCTNAGG | 2 cut(s) | 237, 1495 |
| BsuRI | GGCC | 7 cut(s) | 134, 190, 1210, 1219, 1414, 1663, 2297 |
| BtgI | CCRYGG | 3 cut(s) | 96, 1205, 2366 |
| BtgZI | GCGATG | 1 cut(s) | 1662 |
| BtrI | CACGTC | 1 cut(s) | 776 |
| BtsCI | GGATG | 6 cut(s) | 550, 727, 1117, 1494, 1827, 2500 |
| BtsI | GCAGTG | 2 cut(s) | 429, 1452 |
| BtsIMutI | CAGTG | 9 cut(s) | 120, 303, 429, 885, 1452, 1480, 1625, 2079, 2453 |
| BveI | ACCTGC | 2 cut(s) | 244, 1189 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1451 |
| CfoI | GCGC | 4 cut(s) | 185, 382, 630, 1224 |
| Cfr10I | RCCGGY | 1 cut(s) | 134 |
| Cfr13I | GGNCC | 7 cut(s) | 188, 1092, 1662, 2063, 2263, 2296, 2442 |
| Cfr42I | CCGCGG | 1 cut(s) | 99 |
| CseI | GACGC | 2 cut(s) | 252, 1562 |
| Csp6I | GTAC | 4 cut(s) | 467, 842, 943, 1898 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2055, 2090 |
| CviQI | GTAC | 4 cut(s) | 467, 842, 943, 1898 |
| DpnI | GATC | 8 cut(s) | 335, 939, 1279, 1587, 1632, 1773, 2220, 2364 |
| DpnII | GATC | 8 cut(s) | 333, 937, 1277, 1585, 1630, 1771, 2218, 2362 |
| DraI | TTTAAA | 1 cut(s) | 1918 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2449 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2449 |
| EaeI | YGGCCR | 3 cut(s) | 132, 1208, 1412 |
| EagI | CGGCCG | 1 cut(s) | 132 |
| Eam1104I | CTCTTC | 4 cut(s) | 1200, 1246, 1258, 2164 |
| EarI | CTCTTC | 4 cut(s) | 1200, 1246, 1258, 2164 |
| EciI | GGCGGA | 1 cut(s) | 438 |
| Ecl136II | GAGCTC | 1 cut(s) | 757 |
| EclXI | CGGCCG | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 4 cut(s) | 656, 835, 902, 2028 |
| Eco24I | GRGCYC | 1 cut(s) | 759 |
| Eco47I | GGWCC | 4 cut(s) | 1092, 2063, 2263, 2442 |
| Eco52I | CGGCCG | 1 cut(s) | 132 |
| Eco53kI | GAGCTC | 1 cut(s) | 757 |
| Eco57I | CTGAAG | 1 cut(s) | 792 |
| Eco81I | CCTNAGG | 2 cut(s) | 237, 1495 |
| EcoICRI | GAGCTC | 1 cut(s) | 757 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1092, 2442 |
| EcoRI | GAATTC | 2 cut(s) | 1346, 1654 |
| EcoRII | CCWGG | 2 cut(s) | 588, 2437 |
| EcoT14I | CCWWGG | 4 cut(s) | 656, 835, 902, 2028 |
| EcoT22I | ATGCAT | 2 cut(s) | 727, 1729 |
| EcoT38I | GRGCYC | 1 cut(s) | 759 |
| ErhI | CCWWGG | 4 cut(s) | 656, 835, 902, 2028 |
| FaqI | GGGAC | 6 cut(s) | 110, 255, 1078, 1555, 2076, 2455 |
| FauNDI | CATATG | 1 cut(s) | 1890 |
| FbaI | TGATCA | 3 cut(s) | 333, 1585, 1771 |
| FblI | GTMKAC | 4 cut(s) | 266, 891, 1296, 1403 |
| Fnu4HI | GCNGC | 9 cut(s) | 96, 132, 191, 206, 452, 536, 1220, 1936, 2123 |
| FokI | GGATG | 6 cut(s) | 557, 734, 1124, 1501, 1834, 2507 |
| FriOI | GRGCYC | 1 cut(s) | 759 |
| Fsp4HI | GCNGC | 9 cut(s) | 96, 132, 191, 206, 452, 536, 1220, 1936, 2123 |
| FspBI | CTAG | 2 cut(s) | 819, 2166 |
| FspI | TGCGCA | 1 cut(s) | 381 |
| GlaI | GCGC | 4 cut(s) | 184, 381, 629, 1223 |
| GluI | GCNGC | 9 cut(s) | 96, 132, 191, 206, 452, 536, 1220, 1936, 2123 |
| GsaI | CCCAGC | 1 cut(s) | 2474 |
| GsuI | CTGGAG | 2 cut(s) | 999, 1230 |
| HaeII | RGCGCY | 1 cut(s) | 631 |
| HaeIII | GGCC | 7 cut(s) | 134, 190, 1210, 1219, 1414, 1663, 2297 |
| HapII | CCGG | 4 cut(s) | 128, 135, 186, 2392 |
| HgaI | GACGC | 2 cut(s) | 252, 1562 |
| HhaI | GCGC | 4 cut(s) | 185, 382, 630, 1224 |
| Hin1I | GRCGYC | 3 cut(s) | 5, 263, 1554 |
| Hin6I | GCGC | 4 cut(s) | 183, 380, 628, 1222 |
| HinP1I | GCGC | 4 cut(s) | 183, 380, 628, 1222 |
| HincII | GTYRAC | 3 cut(s) | 267, 653, 1783 |
| HindII | GTYRAC | 3 cut(s) | 267, 653, 1783 |
| HpaI | GTTAAC | 1 cut(s) | 1783 |
| HpaII | CCGG | 4 cut(s) | 128, 135, 186, 2392 |
| HphI | GGTGA | 7 cut(s) | 343, 755, 1016, 1114, 1562, 2297, 2351 |
| Hpy188I | TCNGA | 9 cut(s) | 13, 499, 635, 647, 1387, 1707, 2038, 2104, 2427 |
| Hpy99I | CGWCG | 2 cut(s) | 83, 268 |
| HpyAV | CCTTC | 7 cut(s) | 206, 343, 424, 563, 995, 1631, 1702 |
| HpyCH4III | ACNGT | 5 cut(s) | 113, 124, 202, 889, 1294 |
| HpyCH4IV | ACGT | 3 cut(s) | 5, 775, 2450 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 152, 722, 860, 1181, 1216, 1415, 2480 |
| HpySE526I | ACGT | 3 cut(s) | 5, 775, 2450 |
| Hsp92I | GRCGYC | 3 cut(s) | 5, 263, 1554 |
| HspAI | GCGC | 4 cut(s) | 183, 380, 628, 1222 |
| Kpn2I | TCCGGA | 1 cut(s) | 2391 |
| KroI | GCCGGC | 1 cut(s) | 134 |
| KroNI | GCCGGC | 1 cut(s) | 136 |
| Ksp22I | TGATCA | 3 cut(s) | 333, 1585, 1771 |
| KspAI | GTTAAC | 1 cut(s) | 1783 |
| KspI | CCGCGG | 1 cut(s) | 99 |
| Kzo9I | GATC | 8 cut(s) | 333, 937, 1277, 1585, 1630, 1771, 2218, 2362 |
| LguI | GCTCTTC | 1 cut(s) | 2164 |
| LmnI | GCTCC | 7 cut(s) | 166, 217, 704, 754, 762, 1018, 1180 |
| Lsp1109I | GCAGC | 2 cut(s) | 1922, 2134 |
| MaeI | CTAG | 2 cut(s) | 819, 2166 |
| MaeII | ACGT | 3 cut(s) | 5, 775, 2450 |
| MaeIII | GTNAC | 9 cut(s) | 196, 385, 821, 1288, 1550, 1668, 1683, 2339, 2451 |
| MalI | GATC | 8 cut(s) | 335, 939, 1279, 1587, 1632, 1773, 2220, 2364 |
| MbiI | CCGCTC | 1 cut(s) | 193 |
| MboI | GATC | 8 cut(s) | 333, 937, 1277, 1585, 1630, 1771, 2218, 2362 |
| MhlI | GDGCHC | 2 cut(s) | 509, 759 |
| MlsI | TGGCCA | 1 cut(s) | 1414 |
| MluNI | TGGCCA | 1 cut(s) | 1414 |
| MlyI | GAGTC | 7 cut(s) | 959, 1244, 1391, 1691, 1864, 2042, 2108 |
| MmeI | TCCRAC | 6 cut(s) | 608, 658, 662, 2028, 2082, 2335 |
| Mox20I | TGGCCA | 1 cut(s) | 1414 |
| Mph1103I | ATGCAT | 2 cut(s) | 727, 1729 |
| MroI | TCCGGA | 1 cut(s) | 2391 |
| MroNI | GCCGGC | 1 cut(s) | 134 |
| MroXI | GAANNNNTTC | 2 cut(s) | 552, 1621 |
| MscI | TGGCCA | 1 cut(s) | 1414 |
| MseI | TTAA | 9 cut(s) | 24, 488, 987, 1098, 1647, 1782, 1917, 2094, 2447 |
| MslI | CAYNNNNRTG | 3 cut(s) | 543, 618, 837 |
| Msp20I | TGGCCA | 1 cut(s) | 1414 |
| MspA1I | CMGCKG | 2 cut(s) | 98, 1394 |
| MspCI | CTTAAG | 1 cut(s) | 1097 |
| MspI | CCGG | 4 cut(s) | 128, 135, 186, 2392 |
| MspR9I | CCNGG | 4 cut(s) | 128, 187, 590, 2439 |
| Mva1269I | GAATGC | 5 cut(s) | 424, 554, 1621, 1870, 1950 |
| MvaI | CCWGG | 2 cut(s) | 590, 2439 |
| MvnI | CGCG | 3 cut(s) | 98, 208, 1222 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 152, 722, 860, 1181, 1216, 1415, 2480 |
| NaeI | GCCGGC | 1 cut(s) | 136 |
| NciI | CCSGG | 2 cut(s) | 128, 187 |
| NdeI | CATATG | 1 cut(s) | 1890 |
| NdeII | GATC | 8 cut(s) | 333, 937, 1277, 1585, 1630, 1771, 2218, 2362 |
| NgoMIV | GCCGGC | 1 cut(s) | 134 |
| NmuCI | GTSAC | 7 cut(s) | 196, 385, 821, 1550, 1683, 2339, 2451 |
| NsbI | TGCGCA | 1 cut(s) | 381 |
| NsiI | ATGCAT | 2 cut(s) | 727, 1729 |
| NspI | RCATGY | 6 cut(s) | 542, 571, 832, 863, 1565, 2129 |
| NspV | TTCGAA | 1 cut(s) | 999 |
| OliI | CACNNNNGTG | 1 cut(s) | 837 |
| PaeI | GCATGC | 4 cut(s) | 542, 832, 863, 2129 |
| PaqCI | CACCTGC | 2 cut(s) | 244, 1189 |
| PasI | CCCWGGG | 1 cut(s) | 2438 |
| PciI | ACATGT | 2 cut(s) | 567, 1561 |
| PciSI | GCTCTTC | 1 cut(s) | 2164 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 17, 781 |
| PctI | GAATGC | 5 cut(s) | 424, 554, 1621, 1870, 1950 |
| PdiI | GCCGGC | 1 cut(s) | 136 |
| PdmI | GAANNNNTTC | 2 cut(s) | 552, 1621 |
| PfeI | GAWTC | 3 cut(s) | 459, 1079, 2000 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 595, 2047 |
| PkrI | GCNGC | 9 cut(s) | 97, 133, 192, 207, 453, 537, 1221, 1937, 2124 |
| PleI | GAGTC | 7 cut(s) | 958, 1244, 1390, 1691, 1863, 2041, 2107 |
| PpsI | GAGTC | 7 cut(s) | 958, 1244, 1390, 1691, 1863, 2041, 2107 |
| PpuMI | RGGWCCY | 2 cut(s) | 1092, 2442 |
| PscI | ACATGT | 2 cut(s) | 567, 1561 |
| Psp124BI | GAGCTC | 1 cut(s) | 759 |
| Psp5II | RGGWCCY | 2 cut(s) | 1092, 2442 |
| Psp6I | CCWGG | 2 cut(s) | 588, 2437 |
| PspFI | CCCAGC | 1 cut(s) | 2470 |
| PspGI | CCWGG | 2 cut(s) | 588, 2437 |
| PspPI | GGNCC | 7 cut(s) | 188, 1092, 1662, 2063, 2263, 2296, 2442 |
| PspPPI | RGGWCCY | 2 cut(s) | 1092, 2442 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1451 |
| PvuII | CAGCTG | 1 cut(s) | 1394 |
| RsaI | GTAC | 4 cut(s) | 468, 843, 944, 1899 |
| RsaNI | GTAC | 4 cut(s) | 467, 842, 943, 1898 |
| RseI | CAYNNNNRTG | 3 cut(s) | 543, 618, 837 |
| SacI | GAGCTC | 1 cut(s) | 759 |
| SacII | CCGCGG | 1 cut(s) | 99 |
| SalI | GTCGAC | 1 cut(s) | 265 |
| SapI | GCTCTTC | 1 cut(s) | 2164 |
| SaqAI | TTAA | 9 cut(s) | 24, 488, 987, 1098, 1647, 1782, 1917, 2094, 2447 |
| SatI | GCNGC | 9 cut(s) | 96, 132, 191, 206, 452, 536, 1220, 1936, 2123 |
| Sau3AI | GATC | 8 cut(s) | 333, 937, 1277, 1585, 1630, 1771, 2218, 2362 |
| Sau96I | GGNCC | 7 cut(s) | 188, 1092, 1662, 2063, 2263, 2296, 2442 |
| ScaI | AGTACT | 1 cut(s) | 1899 |
| SchI | GAGTC | 7 cut(s) | 959, 1244, 1391, 1691, 1864, 2042, 2108 |
| ScrFI | CCNGG | 4 cut(s) | 128, 187, 590, 2439 |
| SduI | GDGCHC | 2 cut(s) | 509, 759 |
| SfcI | CTRYAG | 1 cut(s) | 972 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1216 |
| Sfr303I | CCGCGG | 1 cut(s) | 99 |
| SfuI | TTCGAA | 1 cut(s) | 999 |
| SgrBI | CCGCGG | 1 cut(s) | 99 |
| SinI | GGWCC | 4 cut(s) | 1092, 2063, 2263, 2442 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 543, 618, 837 |
| SmlI | CTYRAG | 2 cut(s) | 408, 1097 |
| SmoI | CTYRAG | 2 cut(s) | 408, 1097 |
| SphI | GCATGC | 4 cut(s) | 542, 832, 863, 2129 |
| SspMI | CTAG | 2 cut(s) | 819, 2166 |
| SstI | GAGCTC | 1 cut(s) | 759 |
| StyD4I | CCNGG | 4 cut(s) | 126, 185, 588, 2437 |
| StyI | CCWWGG | 4 cut(s) | 656, 835, 902, 2028 |
| TaaI | ACNGT | 5 cut(s) | 113, 124, 202, 889, 1294 |
| TaiI | ACGT | 3 cut(s) | 8, 778, 2453 |
| TaqI | TCGA | 5 cut(s) | 20, 249, 266, 999, 1352 |
| TatI | WGTACW | 3 cut(s) | 466, 841, 1897 |
| TauI | GCSGC | 7 cut(s) | 98, 134, 193, 208, 454, 538, 1222 |
| TfiI | GAWTC | 3 cut(s) | 459, 1079, 2000 |
| Tru1I | TTAA | 9 cut(s) | 24, 488, 987, 1098, 1647, 1782, 1917, 2094, 2447 |
| Tru9I | TTAA | 9 cut(s) | 24, 488, 987, 1098, 1647, 1782, 1917, 2094, 2447 |
| TscAI | CASTG | 9 cut(s) | 127, 303, 429, 892, 1452, 1480, 1632, 2079, 2460 |
| TseFI | GTSAC | 7 cut(s) | 196, 385, 821, 1550, 1683, 2339, 2451 |
| TseI | GCWGC | 2 cut(s) | 1935, 2122 |
| Tsp45I | GTSAC | 7 cut(s) | 196, 385, 821, 1550, 1683, 2339, 2451 |
| TspGWI | ACGGA | 3 cut(s) | 179, 749, 2355 |
| TspRI | CASTG | 9 cut(s) | 127, 303, 429, 892, 1452, 1480, 1632, 2079, 2460 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 595, 2047 |
| Vha464I | CTTAAG | 1 cut(s) | 1097 |
| VpaK11BI | GGWCC | 4 cut(s) | 1092, 2063, 2263, 2442 |
| XapI | RAATTY | 6 cut(s) | 1117, 1346, 1643, 1654, 2276, 2375 |
| XceI | RCATGY | 6 cut(s) | 542, 571, 832, 863, 1565, 2129 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1815, 2307 |
| XmiI | GTMKAC | 4 cut(s) | 266, 891, 1296, 1403 |
| XmnI | GAANNNNTTC | 2 cut(s) | 552, 1621 |
| XspI | CTAG | 2 cut(s) | 819, 2166 |
| ZraI | GACGTC | 1 cut(s) | 6 |
| ZrmI | AGTACT | 1 cut(s) | 1899 |
| Zsp2I | ATGCAT | 2 cut(s) | 727, 1729 |