Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8328567.1

Orthogroup ID

OG0004454

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 969

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8328567.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

taggatcatctaaagtaacggtagaccctgtactacaaggaggtgggtattcaagggtcttgcaaggtcaagaattctcgaccttgcgaggcagttttgtggagagtgagtctgatacagctgaaaagtctactgcatggccagcttcggttgatgatgagaggattgatgcagtgtctggttcaagaagatttgcttccagtgcagataactggatgccctcagggagacatgagccaacctacacagatttgctctcaggctttggtactaatggtgatgcctcacatggtatctgtcagccctttgttgatcaagcagtagcatctgctaattcaatgagaaagcattcactggatcaggaaggcaagtttaacttgaattcatggtccatgttaccctcatcgctgtcacttagcttggactctaatcagaaggttcctattggcaatgcatcttaccaaccccaacagaatgttagatatggtggattgaatgatcgttctgttaaccatgttcatagagttgagcaaccgcaaggaaattggatgatgcctccaccacccccatctcattttgagagtcaagcgaatgcacgggaagtcatgccaaagcatatgccagtactgaaacatgagcctgttaaacctaaagatggaagctgcaagctctttggcattcccctcataacaccagaaacttcatcacagagacctggaatgaatgaatcagctcgtcataaccaagcacttgccttggagtctgaccagaagttggaaaagtcaaggggactaaagtcagtggataatttattagctgttaatgagtcagataaacaaacttctcagcagcatgccagagatgttcagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0008285 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009838 GO:0009889 GO:0009890 GO:0009892 GO:0009900 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010047 GO:0010150 GO:0010227 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010959 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0033993 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035670 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090693 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901363 GO:1901379 GO:1901381 GO:1901700 GO:1902679 GO:1903286 GO:1903288 GO:1903506 GO:1903507 GO:1904062 GO:1904064 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

289

Amino Acids

31.62

Weight (kDa)

6.22

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62000 AT5G62000 AT5G62000 AT5G62000 AT5G62000
fragaria_vesca	FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310
malus_domestica	MD06G1132100.v1.1 MD14G1148500.v1.1
prunus_persica	Prupe.5G143100_v2.0.a1 Prupe.5G143100_v2.0.a1 Prupe.5G143100_v2.0.a1
pyrus_communis	pycom06g12370 pycom14g12320 pycom14g12330
rosa_chinensis	RchiOBHm_Chr7g0188911
rosa_laevigata	RLG00000004652
rosa_multiflora	Rmu_co8328567.1_g000001 Rmu_ssc0000411.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265950
rosa_rugosa	Rorug06G0494400 Rorug06G0494500
rosa_samantha	Rh7AG099400 Rh7BG101500 Rh7CG102800 Rh7DG101200
rosa_wichuraiana	Rw7G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	774
AccI	GTMKAC	2 cut(s)	23, 130
AciI	CCGC	1 cut(s)	535
AclWI	GGATC	2 cut(s)	12, 365
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	73, 381
AfaI	GTAC	3 cut(s)	32, 270, 626
AfiI	CCNNNNNNNGG	2 cut(s)	655, 774
AgsI	TTSAA	5 cut(s)	53, 185, 338, 381, 495
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	7 cut(s)	121, 145, 419, 662, 669, 733, 817
AluI	AGCT	7 cut(s)	121, 145, 419, 662, 669, 733, 817
Alw26I	GTCTC	2 cut(s)	222, 705
AlwI	GGATC	2 cut(s)	12, 365
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	662, 849
ApoI	RAATTY	2 cut(s)	73, 381
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	389
AxyI	CCTNAGG	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	649, 861
BccI	CCATC	2 cut(s)	576, 649
BciT130I	CCWGG	1 cut(s)	716
BclI	TGATCA	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	222, 705
BisI	GCNGC	2 cut(s)	663, 850
BlsI	GCNGC	2 cut(s)	664, 851
BmcAI	AGTACT	1 cut(s)	626
Bme1390I	CCNGG	1 cut(s)	716
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	1 cut(s)	716
BmsI	GCATC	6 cut(s)	159, 206, 270, 334, 463, 542
BoxI	GACNNNNGTC	1 cut(s)	795
BsaI	GGTCTC	1 cut(s)	705
BsaJI	CCNNGG	1 cut(s)	755
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bsc4I	CCNNNNNNNGG	2 cut(s)	655, 774
Bse1I	ACTGG	4 cut(s)	200, 217, 359, 622
Bse21I	CCTNAGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	1 cut(s)	755
BseGI	GGATG	2 cut(s)	221, 554
BseLI	CCNNNNNNNGG	2 cut(s)	655, 774
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	236, 272, 859
BseNI	ACTGG	4 cut(s)	200, 217, 359, 622
BseXI	GCAGC	2 cut(s)	649, 861
BsgI	GTGCAG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	803
BslI	CCNNNNNNNGG	2 cut(s)	655, 774
BsmAI	GTCTC	2 cut(s)	222, 705
BsmFI	GGGAC	1 cut(s)	803
BsmI	GAATGC	3 cut(s)	348, 597, 677
BsnI	GGCC	1 cut(s)	141
Bso31I	GGTCTC	1 cut(s)	705
Bsp143I	GATC	4 cut(s)	4, 312, 357, 498
BspACI	CCGC	1 cut(s)	535
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	3 cut(s)	235, 271, 858
BspLI	GGNNCC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	12, 365
BspTNI	GGTCTC	1 cut(s)	705
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	4 cut(s)	200, 217, 359, 622
BssECI	CCNNGG	1 cut(s)	755
BssMI	GATC	4 cut(s)	4, 312, 357, 498
BssT1I	CCWWGG	1 cut(s)	755
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	143, 667, 854
BstDEI	CTNAG	4 cut(s)	222, 258, 415, 845
BstF5I	GGATG	2 cut(s)	221, 554
BstKTI	GATC	4 cut(s)	7, 315, 360, 501
BstMAI	GTCTC	2 cut(s)	222, 705
BstMBI	GATC	4 cut(s)	4, 312, 357, 498
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 202
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	1 cut(s)	856
BstPAI	GACNNNNGTC	1 cut(s)	795
BstSCI	CCNGG	1 cut(s)	714
BstV1I	GCAGC	2 cut(s)	649, 861
Bsu36I	CCTNAGG	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	389
BtsCI	GGATG	2 cut(s)	221, 554
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	4 cut(s)	179, 207, 352, 806
Cac8I	GCNNGC	3 cut(s)	143, 667, 854
CaiI	CAGNNNCTG	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	389
Csp6I	GTAC	3 cut(s)	31, 269, 625
CviAII	CATG	9 cut(s)	137, 232, 289, 386, 393, 514, 606, 634, 853
CviQI	GTAC	3 cut(s)	31, 269, 625
DdeI	CTNAG	4 cut(s)	222, 258, 415, 845
DpnI	GATC	4 cut(s)	6, 314, 359, 500
DpnII	GATC	4 cut(s)	4, 312, 357, 498
EaeI	YGGCCR	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	755
Eco31I	GGTCTC	1 cut(s)	705
Eco47I	GGWCC	1 cut(s)	389
Eco81I	CCTNAGG	1 cut(s)	222
EcoRI	GAATTC	2 cut(s)	73, 381
EcoRII	CCWGG	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	755
EcoT22I	ATGCAT	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	755
FaeI	CATG	9 cut(s)	140, 235, 292, 389, 396, 517, 609, 637, 856
FalI	AAGNNNNNCTT	4 cut(s)	180, 212, 361, 393
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	9 cut(s)	136, 231, 288, 385, 392, 513, 605, 633, 852
FauNDI	CATATG	1 cut(s)	617
FbaI	TGATCA	1 cut(s)	312
FblI	GTMKAC	2 cut(s)	23, 130
Fnu4HI	GCNGC	2 cut(s)	663, 850
FokI	GGATG	2 cut(s)	228, 561
Fsp4HI	GCNGC	2 cut(s)	663, 850
GluI	GCNGC	2 cut(s)	663, 850
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	9 cut(s)	140, 235, 292, 389, 396, 517, 609, 637, 856
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HinfI	GANTC	6 cut(s)	109, 424, 582, 727, 760, 826
HpaI	GTTAAC	1 cut(s)	510
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	3 cut(s)	24, 131, 510
Hpy188I	TCNGA	4 cut(s)	114, 434, 765, 831
Hpy188III	TCNNGA	4 cut(s)	70, 78, 185, 361
Hpy8I	GTNNAC	3 cut(s)	24, 131, 510
HpyAV	CCTTC	2 cut(s)	358, 429
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4V	TGCA	7 cut(s)	63, 136, 172, 205, 454, 595, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 202
HpyF3I	CTNAG	4 cut(s)	222, 258, 415, 845
Hsp92II	CATG	9 cut(s)	140, 235, 292, 389, 396, 517, 609, 637, 856
Ksp22I	TGATCA	1 cut(s)	312
KspAI	GTTAAC	1 cut(s)	510
Kzo9I	GATC	4 cut(s)	4, 312, 357, 498
Lsp1109I	GCAGC	2 cut(s)	649, 861
LweI	GCATC	6 cut(s)	159, 206, 270, 334, 463, 542
MaeIII	GTNAC	3 cut(s)	15, 395, 410
MalI	GATC	4 cut(s)	6, 314, 359, 500
MboI	GATC	4 cut(s)	4, 312, 357, 498
MboII	GAAGA	1 cut(s)	200
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	5 cut(s)	73, 333, 381, 543, 807
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	5 cut(s)	118, 418, 591, 769, 835
MmeI	TCCRAC	1 cut(s)	755
MnlI	CCTC	8 cut(s)	34, 82, 155, 231, 294, 411, 566, 694
Mox20I	TGGCCA	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	456
MroXI	GAANNNNTTC	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	4 cut(s)	374, 509, 644, 821
Msp20I	TGGCCA	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	716
Mva1269I	GAATGC	3 cut(s)	348, 597, 677
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	2 cut(s)	142, 202
NdeI	CATATG	1 cut(s)	617
NdeII	GATC	4 cut(s)	4, 312, 357, 498
NlaIII	CATG	9 cut(s)	140, 235, 292, 389, 396, 517, 609, 637, 856
NlaIV	GGNNCC	1 cut(s)	440
NmuCI	GTSAC	1 cut(s)	410
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	1 cut(s)	856
PaeI	GCATGC	1 cut(s)	856
PctI	GAATGC	3 cut(s)	348, 597, 677
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	727
PflMI	CCANNNNNTGG	1 cut(s)	774
PkrI	GCNGC	2 cut(s)	664, 851
PleI	GAGTC	5 cut(s)	117, 418, 590, 768, 834
PpsI	GAGTC	5 cut(s)	117, 418, 590, 768, 834
PshAI	GACNNNNGTC	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	3 cut(s)	32, 270, 626
RsaNI	GTAC	3 cut(s)	31, 269, 625
SaqAI	TTAA	4 cut(s)	374, 509, 644, 821
SatI	GCNGC	2 cut(s)	663, 850
Sau3AI	GATC	4 cut(s)	4, 312, 357, 498
Sau96I	GGNCC	1 cut(s)	389
ScaI	AGTACT	1 cut(s)	626
SchI	GAGTC	5 cut(s)	118, 418, 591, 769, 835
ScrFI	CCNGG	1 cut(s)	716
SfaNI	GCATC	6 cut(s)	159, 206, 270, 334, 463, 542
SinI	GGWCC	1 cut(s)	389
SphI	GCATGC	1 cut(s)	856
Sse9I	AATT	5 cut(s)	73, 333, 381, 543, 807
SsiI	CCGC	1 cut(s)	535
StyD4I	CCNGG	1 cut(s)	714
StyI	CCWWGG	1 cut(s)	755
TaaI	ACNGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	79
TasI	AATT	5 cut(s)	73, 333, 381, 543, 807
TatI	WGTACW	2 cut(s)	30, 624
TfiI	GAWTC	1 cut(s)	727
Tru1I	TTAA	4 cut(s)	374, 509, 644, 821
Tru9I	TTAA	4 cut(s)	374, 509, 644, 821
TscAI	CASTG	4 cut(s)	179, 207, 359, 806
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	662, 849
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	5 cut(s)	374, 508, 692, 736, 740
TspRI	CASTG	4 cut(s)	179, 207, 359, 806
Van91I	CCANNNNNTGG	1 cut(s)	774
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	2 cut(s)	73, 381
XceI	RCATGY	1 cut(s)	856
XmiI	GTMKAC	2 cut(s)	23, 130
XmnI	GAANNNNTTC	1 cut(s)	348
ZrmI	AGTACT	1 cut(s)	626
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.