Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G62000 AT5G62000 AT5G62000 AT5G62000 AT5G62000 |
| fragaria_vesca | FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 FvH4_5g09310 |
| malus_domestica | MD06G1132100.v1.1 MD14G1148500.v1.1 |
| prunus_persica | Prupe.5G143100_v2.0.a1 Prupe.5G143100_v2.0.a1 Prupe.5G143100_v2.0.a1 |
| pyrus_communis | pycom06g12370 pycom14g12320 pycom14g12330 |
| rosa_chinensis | RchiOBHm_Chr7g0188911 |
| rosa_laevigata | RLG00000004652 |
| rosa_multiflora | Rmu_co8328567.1_g000001 Rmu_ssc0000411.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00265950 |
| rosa_rugosa | Rorug06G0494400 Rorug06G0494500 |
| rosa_samantha | Rh7AG099400 Rh7BG101500 Rh7CG102800 Rh7DG101200 |
| rosa_wichuraiana | Rw7G008560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 898 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2158 |
| Acc16I | TGCGCA | 1 cut(s) | 90 |
| Acc36I | ACCTGC | 1 cut(s) | 898 |
| AccB1I | GGYRCC | 1 cut(s) | 743 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 304, 1756 |
| AccI | GTMKAC | 3 cut(s) | 600, 1005, 1112 |
| AccII | CGCG | 1 cut(s) | 931 |
| AccIII | TCCGGA | 1 cut(s) | 2100 |
| AciI | CCGC | 5 cut(s) | 158, 161, 244, 251, 929 |
| AclWI | GGATC | 3 cut(s) | 994, 1347, 2066 |
| AcoI | YGGCCR | 1 cut(s) | 917 |
| AcsI | RAATTY | 5 cut(s) | 826, 1055, 1363, 1985, 2084 |
| AcuI | CTGAAG | 2 cut(s) | 501, 1188 |
| AcyI | GRCGYC | 1 cut(s) | 1263 |
| AfaI | GTAC | 4 cut(s) | 177, 552, 653, 1014 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 304, 915, 940, 1637, 1756, 2195 |
| AflII | CTTAAG | 1 cut(s) | 806 |
| AflIII | ACRYGT | 1 cut(s) | 276 |
| AjiI | CACGTC | 1 cut(s) | 485 |
| AjnI | CCWGG | 1 cut(s) | 297 |
| AleI | CACNNNNGTG | 1 cut(s) | 546 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 219, 251 |
| AluBI | AGCT | 9 cut(s) | 408, 466, 722, 1103, 1194, 1401, 1644, 1651, 1715 |
| AluI | AGCT | 9 cut(s) | 408, 466, 722, 1103, 1194, 1401, 1644, 1651, 1715 |
| Alw21I | GWGCWC | 2 cut(s) | 218, 468 |
| Alw26I | GTCTC | 2 cut(s) | 285, 1204 |
| AlwI | GGATC | 3 cut(s) | 994, 1347, 2066 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1160 |
| Ama87I | CYCGRG | 1 cut(s) | 2147 |
| Aor13HI | TCCGGA | 1 cut(s) | 2100 |
| AoxI | GGCC | 4 cut(s) | 917, 926, 1121, 2004 |
| ApeKI | GCWGC | 2 cut(s) | 1644, 1831 |
| ApoI | RAATTY | 5 cut(s) | 826, 1055, 1363, 1985, 2084 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1586, 1618, 1964, 1996 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 261, 1330, 2130 |
| AspLEI | GCGC | 3 cut(s) | 91, 339, 933 |
| AspS9I | GGNCC | 6 cut(s) | 801, 1371, 1772, 1972, 2005, 2151 |
| AsuC2I | CCSGG | 2 cut(s) | 2148, 2149 |
| AsuHPI | GGTGA | 7 cut(s) | 52, 464, 725, 823, 1271, 2006, 2060 |
| AsuII | TTCGAA | 1 cut(s) | 708 |
| AvaI | CYCGRG | 1 cut(s) | 2147 |
| AvaII | GGWCC | 5 cut(s) | 801, 1371, 1772, 1972, 2151 |
| BanI | GGYRCC | 1 cut(s) | 743 |
| BanII | GRGCYC | 1 cut(s) | 468 |
| BauI | CACGAG | 2 cut(s) | 211, 2119 |
| Bbv12I | GWGCWC | 2 cut(s) | 218, 468 |
| BbvCI | CCTCAGC | 1 cut(s) | 2193 |
| BbvI | GCAGC | 2 cut(s) | 1631, 1843 |
| BccI | CCATC | 4 cut(s) | 520, 810, 1558, 1631 |
| BceAI | ACGGC | 1 cut(s) | 932 |
| BciT130I | CCWGG | 1 cut(s) | 299 |
| BclI | TGATCA | 4 cut(s) | 42, 646, 1294, 1480 |
| BcnI | CCSGG | 2 cut(s) | 2148, 2149 |
| BcoDI | GTCTC | 2 cut(s) | 285, 1204 |
| BfaI | CTAG | 2 cut(s) | 528, 1875 |
| BfmI | CTRYAG | 1 cut(s) | 681 |
| BfoI | RGCGCY | 1 cut(s) | 340 |
| BfrI | CTTAAG | 1 cut(s) | 806 |
| BfuAI | ACCTGC | 1 cut(s) | 898 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 925 |
| BisI | GCNGC | 5 cut(s) | 161, 245, 929, 1645, 1832 |
| BlpI | GCTNAGC | 1 cut(s) | 63 |
| BlsI | GCNGC | 5 cut(s) | 162, 246, 930, 1646, 1833 |
| Bme1390I | CCNGG | 3 cut(s) | 299, 2148, 2149 |
| Bme18I | GGWCC | 5 cut(s) | 801, 1371, 1772, 1972, 2151 |
| BmeT110I | CYCGRG | 1 cut(s) | 2147 |
| BmgBI | CACGTC | 1 cut(s) | 485 |
| BmgT120I | GGNCC | 6 cut(s) | 801, 1371, 1772, 1972, 2005, 2151 |
| BmrFI | CCNGG | 3 cut(s) | 299, 2148, 2149 |
| BmrI | ACTGGG | 1 cut(s) | 2174 |
| BmuI | ACTGGG | 1 cut(s) | 2174 |
| BpmI | CTGGAG | 2 cut(s) | 708, 939 |
| Bpu10I | CCTNAGC | 2 cut(s) | 108, 2193 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 63 |
| Bpu14I | TTCGAA | 1 cut(s) | 708 |
| BpuEI | CTTGAG | 1 cut(s) | 102 |
| BpuMI | CCSGG | 2 cut(s) | 2148, 2149 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2111 |
| BsaHI | GRCGYC | 1 cut(s) | 1263 |
| BsaWI | WCCGGW | 1 cut(s) | 2100 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1076, 1106 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 304, 915, 940, 1637, 1756, 2195 |
| Bse1I | ACTGG | 7 cut(s) | 5, 276, 745, 1182, 1341, 1702, 2169 |
| Bse3DI | GCAATG | 4 cut(s) | 495, 511, 1438, 2190 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2111 |
| BseAI | TCCGGA | 1 cut(s) | 2100 |
| BseBI | CCWGG | 1 cut(s) | 299 |
| BseGI | GGATG | 7 cut(s) | 259, 436, 693, 826, 1203, 1536, 2209 |
| BseJI | GATNNNNATC | 1 cut(s) | 2111 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 304, 915, 940, 1637, 1756, 2195 |
| BseMI | GCAATG | 4 cut(s) | 495, 511, 1438, 2190 |
| BseMII | CTCAG | 6 cut(s) | 54, 99, 219, 618, 1841, 2184 |
| BseNI | ACTGG | 7 cut(s) | 5, 276, 745, 1182, 1341, 1702, 2169 |
| BseRI | GAGGAG | 1 cut(s) | 2186 |
| BseXI | GCAGC | 2 cut(s) | 1631, 1843 |
| BseYI | CCCAGC | 1 cut(s) | 2179 |
| BsgI | GTGCAG | 3 cut(s) | 155, 876, 1206 |
| Bsh1236I | CGCG | 1 cut(s) | 931 |
| BshFI | GGCC | 4 cut(s) | 919, 928, 1123, 2006 |
| BshNI | GGYRCC | 1 cut(s) | 743 |
| BsiHKAI | GWGCWC | 2 cut(s) | 218, 468 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2147 |
| BsiSI | CCGG | 2 cut(s) | 2101, 2148 |
| BslFI | GGGAC | 4 cut(s) | 787, 1264, 1785, 2164 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 304, 915, 940, 1637, 1756, 2195 |
| BsmAI | GTCTC | 2 cut(s) | 285, 1204 |
| BsmFI | GGGAC | 4 cut(s) | 787, 1264, 1785, 2164 |
| BsmI | GAATGC | 5 cut(s) | 133, 263, 1330, 1579, 1659 |
| BsnI | GGCC | 4 cut(s) | 919, 928, 1123, 2006 |
| BsoBI | CYCGRG | 1 cut(s) | 2147 |
| Bsp119I | TTCGAA | 1 cut(s) | 708 |
| Bsp1286I | GDGCHC | 2 cut(s) | 218, 468 |
| Bsp13I | TCCGGA | 1 cut(s) | 2100 |
| Bsp143I | GATC | 8 cut(s) | 42, 646, 986, 1294, 1339, 1480, 1927, 2071 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 63 |
| BspACI | CCGC | 5 cut(s) | 158, 161, 244, 251, 929 |
| BspANI | GGCC | 4 cut(s) | 919, 928, 1123, 2006 |
| BspCNI | CTCAG | 6 cut(s) | 55, 100, 218, 619, 1840, 2185 |
| BspEI | TCCGGA | 1 cut(s) | 2100 |
| BspFNI | CGCG | 1 cut(s) | 931 |
| BspMI | ACCTGC | 1 cut(s) | 898 |
| BspPI | GGATC | 3 cut(s) | 994, 1347, 2066 |
| BspQI | GCTCTTC | 1 cut(s) | 1873 |
| BspT104I | TTCGAA | 1 cut(s) | 708 |
| BspT107I | GGYRCC | 1 cut(s) | 743 |
| BspTI | CTTAAG | 1 cut(s) | 806 |
| BsrDI | GCAATG | 4 cut(s) | 495, 511, 1438, 2190 |
| BsrI | ACTGG | 7 cut(s) | 5, 276, 745, 1182, 1341, 1702, 2169 |
| BssMI | GATC | 8 cut(s) | 42, 646, 986, 1294, 1339, 1480, 1927, 2071 |
| BssNI | GRCGYC | 1 cut(s) | 1263 |
| BssSI | CACGAG | 2 cut(s) | 211, 2119 |
| BssT1I | CCWWGG | 4 cut(s) | 365, 544, 611, 1737 |
| Bst2BI | CACGAG | 2 cut(s) | 211, 2119 |
| Bst2UI | CCWGG | 1 cut(s) | 299 |
| Bst4CI | ACNGT | 2 cut(s) | 598, 1003 |
| Bst6I | CTCTTC | 5 cut(s) | 909, 955, 967, 1873, 2121 |
| BstACI | GRCGYC | 1 cut(s) | 1263 |
| BstAFI | CTTAAG | 1 cut(s) | 806 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 431, 569, 1124, 2189 |
| BstBI | TTCGAA | 1 cut(s) | 708 |
| BstC8I | GCNNGC | 8 cut(s) | 249, 539, 570, 876, 1125, 1649, 1836, 2190 |
| BstDSI | CCRYGG | 2 cut(s) | 914, 2075 |
| BstF5I | GGATG | 7 cut(s) | 259, 436, 693, 826, 1203, 1536, 2209 |
| BstFNI | CGCG | 1 cut(s) | 931 |
| BstH2I | RGCGCY | 1 cut(s) | 340 |
| BstHHI | GCGC | 3 cut(s) | 91, 339, 933 |
| BstKTI | GATC | 8 cut(s) | 45, 649, 989, 1297, 1342, 1483, 1930, 2074 |
| BstMAI | GTCTC | 2 cut(s) | 285, 1204 |
| BstMBI | GATC | 8 cut(s) | 42, 646, 986, 1294, 1339, 1480, 1927, 2071 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 431, 569, 890, 925, 1124, 2189 |
| BstNI | CCWGG | 1 cut(s) | 299 |
| BstNSI | RCATGY | 5 cut(s) | 251, 280, 541, 572, 1838 |
| BstSCI | CCNGG | 3 cut(s) | 297, 2146, 2147 |
| BstSFI | CTRYAG | 1 cut(s) | 681 |
| BstUI | CGCG | 1 cut(s) | 931 |
| BstV1I | GCAGC | 2 cut(s) | 1631, 1843 |
| BsuRI | GGCC | 4 cut(s) | 919, 928, 1123, 2006 |
| BtgI | CCRYGG | 2 cut(s) | 914, 2075 |
| BtgZI | GCGATG | 1 cut(s) | 1371 |
| BtrI | CACGTC | 1 cut(s) | 485 |
| BtsCI | GGATG | 7 cut(s) | 259, 436, 693, 826, 1203, 1536, 2209 |
| BtsI | GCAGTG | 2 cut(s) | 138, 1161 |
| BtsIMutI | CAGTG | 8 cut(s) | 12, 138, 594, 1161, 1189, 1334, 1788, 2162 |
| BveI | ACCTGC | 1 cut(s) | 898 |
| Cac8I | GCNNGC | 8 cut(s) | 249, 539, 570, 876, 1125, 1649, 1836, 2190 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1160 |
| CfoI | GCGC | 3 cut(s) | 91, 339, 933 |
| Cfr13I | GGNCC | 6 cut(s) | 801, 1371, 1772, 1972, 2005, 2151 |
| Cfr9I | CCCGGG | 1 cut(s) | 2147 |
| CseI | GACGC | 1 cut(s) | 1271 |
| Csp6I | GTAC | 4 cut(s) | 176, 551, 652, 1013 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1764, 1799 |
| CviQI | GTAC | 4 cut(s) | 176, 551, 652, 1013 |
| DpnI | GATC | 8 cut(s) | 44, 648, 988, 1296, 1341, 1482, 1929, 2073 |
| DpnII | GATC | 8 cut(s) | 42, 646, 986, 1294, 1339, 1480, 1927, 2071 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2158 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2158 |
| EaeI | YGGCCR | 1 cut(s) | 917 |
| Eam1104I | CTCTTC | 5 cut(s) | 909, 955, 967, 1873, 2121 |
| EarI | CTCTTC | 5 cut(s) | 909, 955, 967, 1873, 2121 |
| EciI | GGCGGA | 1 cut(s) | 147 |
| Ecl136II | GAGCTC | 1 cut(s) | 466 |
| Eco130I | CCWWGG | 4 cut(s) | 365, 544, 611, 1737 |
| Eco24I | GRGCYC | 1 cut(s) | 468 |
| Eco47I | GGWCC | 5 cut(s) | 801, 1371, 1772, 1972, 2151 |
| Eco53kI | GAGCTC | 1 cut(s) | 466 |
| Eco57I | CTGAAG | 2 cut(s) | 501, 1188 |
| Eco88I | CYCGRG | 1 cut(s) | 2147 |
| EcoICRI | GAGCTC | 1 cut(s) | 466 |
| EcoO109I | RGGNCCY | 2 cut(s) | 801, 2151 |
| EcoRI | GAATTC | 2 cut(s) | 1055, 1363 |
| EcoRII | CCWGG | 1 cut(s) | 297 |
| EcoT14I | CCWWGG | 4 cut(s) | 365, 544, 611, 1737 |
| EcoT22I | ATGCAT | 2 cut(s) | 436, 1438 |
| EcoT38I | GRGCYC | 1 cut(s) | 468 |
| ErhI | CCWWGG | 4 cut(s) | 365, 544, 611, 1737 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1343, 1375 |
| FaqI | GGGAC | 4 cut(s) | 787, 1264, 1785, 2164 |
| FauNDI | CATATG | 1 cut(s) | 1599 |
| FbaI | TGATCA | 4 cut(s) | 42, 646, 1294, 1480 |
| FblI | GTMKAC | 3 cut(s) | 600, 1005, 1112 |
| Fnu4HI | GCNGC | 5 cut(s) | 161, 245, 929, 1645, 1832 |
| FokI | GGATG | 7 cut(s) | 266, 443, 700, 833, 1210, 1543, 2216 |
| FriOI | GRGCYC | 1 cut(s) | 468 |
| Fsp4HI | GCNGC | 5 cut(s) | 161, 245, 929, 1645, 1832 |
| FspBI | CTAG | 2 cut(s) | 528, 1875 |
| FspI | TGCGCA | 1 cut(s) | 90 |
| GlaI | GCGC | 3 cut(s) | 90, 338, 932 |
| GluI | GCNGC | 5 cut(s) | 161, 245, 929, 1645, 1832 |
| GsaI | CCCAGC | 1 cut(s) | 2183 |
| GsuI | CTGGAG | 2 cut(s) | 708, 939 |
| HaeII | RGCGCY | 1 cut(s) | 340 |
| HaeIII | GGCC | 4 cut(s) | 919, 928, 1123, 2006 |
| HapII | CCGG | 2 cut(s) | 2101, 2148 |
| HgaI | GACGC | 1 cut(s) | 1271 |
| HhaI | GCGC | 3 cut(s) | 91, 339, 933 |
| Hin1I | GRCGYC | 1 cut(s) | 1263 |
| Hin6I | GCGC | 3 cut(s) | 89, 337, 931 |
| HinP1I | GCGC | 3 cut(s) | 89, 337, 931 |
| HincII | GTYRAC | 2 cut(s) | 362, 1492 |
| HindII | GTYRAC | 2 cut(s) | 362, 1492 |
| HinfI | GANTC | 9 cut(s) | 659, 788, 959, 1091, 1406, 1564, 1709, 1742, 1808 |
| HpaI | GTTAAC | 1 cut(s) | 1492 |
| HpaII | CCGG | 2 cut(s) | 2101, 2148 |
| HphI | GGTGA | 7 cut(s) | 52, 464, 725, 823, 1271, 2006, 2060 |
| Hpy188I | TCNGA | 8 cut(s) | 208, 344, 356, 1096, 1416, 1747, 1813, 2136 |
| HpyAV | CCTTC | 7 cut(s) | 52, 133, 272, 704, 1212, 1340, 1411 |
| HpyCH4III | ACNGT | 2 cut(s) | 598, 1003 |
| HpyCH4IV | ACGT | 2 cut(s) | 484, 2159 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 431, 569, 890, 925, 1124, 2189 |
| HpySE526I | ACGT | 2 cut(s) | 484, 2159 |
| Hsp92I | GRCGYC | 1 cut(s) | 1263 |
| HspAI | GCGC | 3 cut(s) | 89, 337, 931 |
| Kpn2I | TCCGGA | 1 cut(s) | 2100 |
| Ksp22I | TGATCA | 4 cut(s) | 42, 646, 1294, 1480 |
| KspAI | GTTAAC | 1 cut(s) | 1492 |
| Kzo9I | GATC | 8 cut(s) | 42, 646, 986, 1294, 1339, 1480, 1927, 2071 |
| LguI | GCTCTTC | 1 cut(s) | 1873 |
| LmnI | GCTCC | 5 cut(s) | 413, 463, 471, 727, 889 |
| Lsp1109I | GCAGC | 2 cut(s) | 1631, 1843 |
| MaeI | CTAG | 2 cut(s) | 528, 1875 |
| MaeII | ACGT | 2 cut(s) | 484, 2159 |
| MalI | GATC | 8 cut(s) | 44, 648, 988, 1296, 1341, 1482, 1929, 2073 |
| MboI | GATC | 8 cut(s) | 42, 646, 986, 1294, 1339, 1480, 1927, 2071 |
| MfeI | CAATTG | 1 cut(s) | 1976 |
| MhlI | GDGCHC | 2 cut(s) | 218, 468 |
| MlyI | GAGTC | 7 cut(s) | 668, 953, 1100, 1400, 1573, 1751, 1817 |
| MmeI | TCCRAC | 6 cut(s) | 317, 367, 371, 1737, 1791, 2044 |
| Mph1103I | ATGCAT | 2 cut(s) | 436, 1438 |
| MroI | TCCGGA | 1 cut(s) | 2100 |
| MroXI | GAANNNNTTC | 3 cut(s) | 261, 1330, 2130 |
| MseI | TTAA | 8 cut(s) | 197, 696, 807, 1356, 1491, 1626, 1803, 2156 |
| MslI | CAYNNNNRTG | 3 cut(s) | 252, 327, 546 |
| MspA1I | CMGCKG | 1 cut(s) | 1103 |
| MspCI | CTTAAG | 1 cut(s) | 806 |
| MspI | CCGG | 2 cut(s) | 2101, 2148 |
| MspR9I | CCNGG | 3 cut(s) | 299, 2148, 2149 |
| MunI | CAATTG | 1 cut(s) | 1976 |
| Mva1269I | GAATGC | 5 cut(s) | 133, 263, 1330, 1579, 1659 |
| MvaI | CCWGG | 1 cut(s) | 299 |
| MvnI | CGCG | 1 cut(s) | 931 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 431, 569, 890, 925, 1124, 2189 |
| NciI | CCSGG | 2 cut(s) | 2148, 2149 |
| NdeI | CATATG | 1 cut(s) | 1599 |
| NdeII | GATC | 8 cut(s) | 42, 646, 986, 1294, 1339, 1480, 1927, 2071 |
| NmuCI | GTSAC | 7 cut(s) | 94, 530, 1259, 1392, 1602, 2048, 2160 |
| NsbI | TGCGCA | 1 cut(s) | 90 |
| NsiI | ATGCAT | 2 cut(s) | 436, 1438 |
| NspI | RCATGY | 5 cut(s) | 251, 280, 541, 572, 1838 |
| NspV | TTCGAA | 1 cut(s) | 708 |
| OliI | CACNNNNGTG | 1 cut(s) | 546 |
| PaeI | GCATGC | 4 cut(s) | 251, 541, 572, 1838 |
| PaqCI | CACCTGC | 1 cut(s) | 898 |
| PciI | ACATGT | 1 cut(s) | 276 |
| PciSI | GCTCTTC | 1 cut(s) | 1873 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 490 |
| PctI | GAATGC | 5 cut(s) | 133, 263, 1330, 1579, 1659 |
| PdmI | GAANNNNTTC | 3 cut(s) | 261, 1330, 2130 |
| PfeI | GAWTC | 2 cut(s) | 788, 1709 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 304, 1756 |
| PkrI | GCNGC | 5 cut(s) | 162, 246, 930, 1646, 1833 |
| PleI | GAGTC | 7 cut(s) | 667, 953, 1099, 1400, 1572, 1750, 1816 |
| PpsI | GAGTC | 7 cut(s) | 667, 953, 1099, 1400, 1572, 1750, 1816 |
| PpuMI | RGGWCCY | 2 cut(s) | 801, 2151 |
| PscI | ACATGT | 1 cut(s) | 276 |
| Psp124BI | GAGCTC | 1 cut(s) | 468 |
| Psp5II | RGGWCCY | 2 cut(s) | 801, 2151 |
| Psp6I | CCWGG | 1 cut(s) | 297 |
| PspFI | CCCAGC | 1 cut(s) | 2179 |
| PspGI | CCWGG | 1 cut(s) | 297 |
| PspPI | GGNCC | 6 cut(s) | 801, 1371, 1772, 1972, 2005, 2151 |
| PspPPI | RGGWCCY | 2 cut(s) | 801, 2151 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1160 |
| PvuII | CAGCTG | 1 cut(s) | 1103 |
| RsaI | GTAC | 4 cut(s) | 177, 552, 653, 1014 |
| RsaNI | GTAC | 4 cut(s) | 176, 551, 652, 1013 |
| RseI | CAYNNNNRTG | 3 cut(s) | 252, 327, 546 |
| SacI | GAGCTC | 1 cut(s) | 468 |
| SapI | GCTCTTC | 1 cut(s) | 1873 |
| SaqAI | TTAA | 8 cut(s) | 197, 696, 807, 1356, 1491, 1626, 1803, 2156 |
| SatI | GCNGC | 5 cut(s) | 161, 245, 929, 1645, 1832 |
| Sau3AI | GATC | 8 cut(s) | 42, 646, 986, 1294, 1339, 1480, 1927, 2071 |
| Sau96I | GGNCC | 6 cut(s) | 801, 1371, 1772, 1972, 2005, 2151 |
| SchI | GAGTC | 7 cut(s) | 668, 953, 1100, 1400, 1573, 1751, 1817 |
| ScrFI | CCNGG | 3 cut(s) | 299, 2148, 2149 |
| SduI | GDGCHC | 2 cut(s) | 218, 468 |
| SfcI | CTRYAG | 1 cut(s) | 681 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 925 |
| SfuI | TTCGAA | 1 cut(s) | 708 |
| SinI | GGWCC | 5 cut(s) | 801, 1371, 1772, 1972, 2151 |
| SmaI | CCCGGG | 1 cut(s) | 2149 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 252, 327, 546 |
| SmlI | CTYRAG | 2 cut(s) | 117, 806 |
| SmoI | CTYRAG | 2 cut(s) | 117, 806 |
| SphI | GCATGC | 4 cut(s) | 251, 541, 572, 1838 |
| SsiI | CCGC | 5 cut(s) | 158, 161, 244, 251, 929 |
| SspMI | CTAG | 2 cut(s) | 528, 1875 |
| SstI | GAGCTC | 1 cut(s) | 468 |
| StyD4I | CCNGG | 3 cut(s) | 297, 2146, 2147 |
| StyI | CCWWGG | 4 cut(s) | 365, 544, 611, 1737 |
| TaaI | ACNGT | 2 cut(s) | 598, 1003 |
| TaiI | ACGT | 2 cut(s) | 487, 2162 |
| TaqI | TCGA | 2 cut(s) | 708, 1061 |
| TatI | WGTACW | 4 cut(s) | 175, 550, 651, 1012 |
| TauI | GCSGC | 3 cut(s) | 163, 247, 931 |
| TfiI | GAWTC | 2 cut(s) | 788, 1709 |
| Tru1I | TTAA | 8 cut(s) | 197, 696, 807, 1356, 1491, 1626, 1803, 2156 |
| Tru9I | TTAA | 8 cut(s) | 197, 696, 807, 1356, 1491, 1626, 1803, 2156 |
| TscAI | CASTG | 8 cut(s) | 12, 138, 601, 1161, 1189, 1341, 1788, 2169 |
| TseFI | GTSAC | 7 cut(s) | 94, 530, 1259, 1392, 1602, 2048, 2160 |
| TseI | GCWGC | 2 cut(s) | 1644, 1831 |
| Tsp45I | GTSAC | 7 cut(s) | 94, 530, 1259, 1392, 1602, 2048, 2160 |
| TspGWI | ACGGA | 2 cut(s) | 458, 2064 |
| TspMI | CCCGGG | 1 cut(s) | 2147 |
| TspRI | CASTG | 8 cut(s) | 12, 138, 601, 1161, 1189, 1341, 1788, 2169 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 304, 1756 |
| Vha464I | CTTAAG | 1 cut(s) | 806 |
| VpaK11BI | GGWCC | 5 cut(s) | 801, 1371, 1772, 1972, 2151 |
| XapI | RAATTY | 5 cut(s) | 826, 1055, 1363, 1985, 2084 |
| XceI | RCATGY | 5 cut(s) | 251, 280, 541, 572, 1838 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1524, 2016 |
| XmaI | CCCGGG | 1 cut(s) | 2147 |
| XmiI | GTMKAC | 3 cut(s) | 600, 1005, 1112 |
| XmnI | GAANNNNTTC | 3 cut(s) | 261, 1330, 2130 |
| XspI | CTAG | 2 cut(s) | 528, 1875 |
| Zsp2I | ATGCAT | 2 cut(s) | 436, 1438 |