Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008493

Physical Location & Seq

Genomic Coordinates Forward (+)

16295065 .. 16297499

Gene Structure 2435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCGGGCAGCTCCGCGGTAGTAGCGAACCTGGAAGATGTGCCCTCCGTCGATCTCATGACCGAGCTCCTCCGCCGCATGAAATGCTCCACCAAGCCCGACAAGCGCCTCATTCTCATCGGCCCACCCGGATCAGGGAAAGGTACCCAATCACCTATAATTAAGGATGACTATTGCTTGTGCCACTTGGCTACTGGTGATATGTTGAGAGCCGCTGTTTCTGCTAAGACTCCTCTTGGGGTTAAAGCTAAAGAGGCTATGGATAAGGGAGAGCTTGTTTCCGATGACTTGGTTGTTGGCATCATAGATGAAGCAATGAAGAAGCCTTCATGTCAGAAAGGTTTCATTCTTGATGGATTTCCAAGGACTGTGGTCCAAGCAGAGAAGCTAGATGAGATGCTGAAAAAGCAGGGAGCTAAGATTGATAAGGTGCTCAACTTTGCAGTTGATGATGCAATCTTGGAAGAGAGGATTACTGGTCGCTGGATACACCCATCCAGGCTCTGGATCGATCCTACCACACGAAATTTGCGCCACCCAAGGCTCCTGGTGTTGATGATACGGGTAACTGGAGAACCTTTGATTCAACGGAAGGATGATACTGCAGCAGTTCTCAAGTCAAGGCTGGAAGCATTTCACAAGCAAACTGAACCGGTTATTGGCTATTATTCCCAGAAAGGCATTGTTGCCAATCTTCTAGCGGAGAAACCTCCTCAAGAGGTCACTTCCGAGGTTCATAAAGTGCTCTCGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005524 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046483 GO:0046940 GO:0050145 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK ADK_lid

Protein Analysis

252

Amino Acids

27.64

Weight (kDa)

8.79

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	39 - 227	1.7e-59	Adenylate kinase
AAA_17	PF13207	40 - 159	1.4e-25	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50370 AT5G50370 AT5G63400 AT5G63400
fragaria_vesca	FvH4_5g07870
malus_domestica	MD06G1145300.v1.1 MD14G1160000.v1.1
prunus_persica	Prupe.5G153600_v2.0.a1 Prupe.5G153600_v2.0.a1
pyrus_communis	pycom06g13460 pycom14g13350
rosa_chinensis	RchiOBHm_Chr7g0190591
rosa_laevigata	RLG00000004512
rosa_multiflora	Rmu_co8305173.1_g000001 Rmu_sc0006709.1_g000012
rosa_roxburghii	Rroxscaffold_3G00264480
rosa_rugosa	Rorug06G0505500 Rorug06G0505600
rosa_samantha	Rh7AG112100 Rh7BG114900
rosa_wichuraiana	Rw4G010280 Rw7G009780 Rw7G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	504
AccII	CGCG	1 cut(s)	17
AciI	CCGC	7 cut(s)	5, 15, 17, 73, 76, 213, 701
AclWI	GGATC	3 cut(s)	139, 506, 515
AcsI	RAATTY	1 cut(s)	526
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	4 cut(s)	134, 135, 504, 659
AgeI	ACCGGT	1 cut(s)	652
AgsI	TTSAA	1 cut(s)	587
AjnI	CCWGG	3 cut(s)	30, 497, 546
AjuI	GAANNNNNNNTTGG	2 cut(s)	642, 674
AluBI	AGCT	6 cut(s)	12, 67, 248, 274, 388, 416
AluI	AGCT	6 cut(s)	12, 67, 248, 274, 388, 416
Alw21I	GWGCWC	3 cut(s)	69, 435, 747
AlwI	GGATC	3 cut(s)	139, 506, 515
AlwNI	CAGNNNCTG	1 cut(s)	504
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	2 cut(s)	9, 605
ApoI	RAATTY	1 cut(s)	526
AsiGI	ACCGGT	1 cut(s)	652
Asp700I	GAANNNNTTC	2 cut(s)	341, 633
Asp718I	GGTACC	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	108, 534
AspS9I	GGNCC	2 cut(s)	122, 373
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	144, 209
AvaII	GGWCC	1 cut(s)	373
BaeGI	GKGCMC	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	3 cut(s)	69, 435, 747
BbvI	GCAGC	2 cut(s)	21, 617
BccI	CCATC	2 cut(s)	347, 502
BciT130I	CCWGG	3 cut(s)	32, 499, 548
BciVI	GTATCC	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	129
BfaI	CTAG	2 cut(s)	389, 698
BfmI	CTRYAG	1 cut(s)	603
BfoI	RGCGCY	1 cut(s)	109
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	4 cut(s)	10, 76, 213, 606
BlsI	GCNGC	4 cut(s)	11, 77, 214, 607
Bme1390I	CCNGG	4 cut(s)	32, 129, 499, 548
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	122, 373
BmiI	GGNNCC	2 cut(s)	145, 545
BmrFI	CCNGG	4 cut(s)	32, 129, 499, 548
BmsI	GCATC	3 cut(s)	309, 387, 442
BoxI	GACNNNNGTC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	591
BpuEI	CTTGAG	2 cut(s)	599, 699
BpuMI	CCSGG	1 cut(s)	129
Bsa29I	ATCGAT	1 cut(s)	510
BsaJI	CCNNGG	4 cut(s)	15, 362, 539, 729
BsaWI	WCCGGW	1 cut(s)	652
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 135, 504, 659
Bse118I	RCCGGY	1 cut(s)	652
Bse1I	ACTGG	3 cut(s)	199, 481, 574
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	3 cut(s)	32, 499, 548
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	4 cut(s)	15, 362, 539, 729
BseGI	GGATG	3 cut(s)	172, 494, 601
BseLI	CCNNNNNNNGG	4 cut(s)	134, 135, 504, 659
BseMI	GCAATG	1 cut(s)	321
BseNI	ACTGG	3 cut(s)	199, 481, 574
BseRI	GAGGAG	3 cut(s)	59, 222, 702
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	21, 617
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	143
BshTI	ACCGGT	1 cut(s)	652
BshVI	ATCGAT	1 cut(s)	510
BsiHKAI	GWGCWC	3 cut(s)	69, 435, 747
BsiSI	CCGG	2 cut(s)	129, 653
BslI	CCNNNNNNNGG	4 cut(s)	134, 135, 504, 659
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	4 cut(s)	45, 69, 435, 747
Bsp143I	GATC	4 cut(s)	52, 131, 507, 511
BspACI	CCGC	7 cut(s)	5, 15, 17, 73, 76, 213, 701
BspANI	GGCC	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	510
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	145, 545
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	3 cut(s)	139, 506, 515
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	652
BsrI	ACTGG	3 cut(s)	199, 481, 574
BssAI	RCCGGY	1 cut(s)	652
BssECI	CCNNGG	4 cut(s)	15, 362, 539, 729
BssMI	GATC	4 cut(s)	52, 131, 507, 511
BssT1I	CCWWGG	2 cut(s)	362, 539
Bst2UI	CCWGG	3 cut(s)	32, 499, 548
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	225, 417
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	3 cut(s)	172, 494, 601
BstFNI	CGCG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	2 cut(s)	108, 534
BstKTI	GATC	4 cut(s)	55, 134, 510, 514
BstMBI	GATC	4 cut(s)	52, 131, 507, 511
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 84, 103, 221, 254, 406
BstNI	CCWGG	3 cut(s)	32, 499, 548
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	4 cut(s)	30, 127, 497, 546
BstSFI	CTRYAG	1 cut(s)	603
BstSLI	GKGCMC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	21, 617
Bsu15I	ATCGAT	1 cut(s)	510
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	510
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	172, 494, 601
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	504
CciI	TCATGA	1 cut(s)	57
CfoI	GCGC	2 cut(s)	108, 534
Cfr10I	RCCGGY	1 cut(s)	652
Cfr13I	GGNCC	2 cut(s)	122, 373
Cfr42I	CCGCGG	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	510
Csp6I	GTAC	1 cut(s)	144
CspAI	ACCGGT	1 cut(s)	652
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	3 cut(s)	58, 79, 330
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	2 cut(s)	225, 417
DpnI	GATC	4 cut(s)	54, 133, 509, 513
DpnII	GATC	4 cut(s)	52, 131, 507, 511
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
EciI	GGCGGA	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	362, 539
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	3 cut(s)	30, 497, 546
EcoT14I	CCWWGG	2 cut(s)	362, 539
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	2 cut(s)	362, 539
FaeI	CATG	3 cut(s)	61, 82, 333
FaiI	YATR	8 cut(s)	59, 80, 158, 203, 260, 305, 331, 738
FatI	CATG	3 cut(s)	57, 78, 329
Fnu4HI	GCNGC	4 cut(s)	10, 76, 213, 606
FokI	GGATG	3 cut(s)	179, 481, 608
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	4 cut(s)	10, 76, 213, 606
FspBI	CTAG	2 cut(s)	389, 698
GlaI	GCGC	2 cut(s)	107, 533
GluI	GCNGC	4 cut(s)	10, 76, 213, 606
GsuI	CTGGAG	1 cut(s)	591
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	2 cut(s)	129, 653
HhaI	GCGC	2 cut(s)	108, 534
Hin1II	CATG	3 cut(s)	61, 82, 333
Hin6I	GCGC	2 cut(s)	106, 532
HinP1I	GCGC	2 cut(s)	106, 532
HinfI	GANTC	2 cut(s)	229, 583
HpaII	CCGG	2 cut(s)	129, 653
HphI	GGTGA	2 cut(s)	144, 209
Hpy188I	TCNGA	3 cut(s)	283, 336, 730
Hpy188III	TCNNGA	4 cut(s)	58, 350, 505, 716
Hpy99I	CGWCG	2 cut(s)	53, 754
HpyAV	CCTTC	2 cut(s)	336, 586
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	3 cut(s)	443, 455, 605
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 84, 103, 221, 254, 406
HpyF3I	CTNAG	2 cut(s)	225, 417
Hsp92II	CATG	3 cut(s)	61, 82, 333
HspAI	GCGC	2 cut(s)	106, 532
KpnI	GGTACC	1 cut(s)	147
KspI	CCGCGG	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	52, 131, 507, 511
LmnI	GCTCC	5 cut(s)	17, 72, 92, 413, 549
Lsp1109I	GCAGC	2 cut(s)	21, 617
LweI	GCATC	3 cut(s)	309, 387, 442
MaeI	CTAG	2 cut(s)	389, 698
MaeIII	GTNAC	2 cut(s)	565, 721
MalI	GATC	4 cut(s)	54, 133, 509, 513
MboI	GATC	4 cut(s)	52, 131, 507, 511
MboII	GAAGA	4 cut(s)	47, 331, 476, 686
MhlI	GDGCHC	4 cut(s)	45, 69, 435, 747
MluCI	AATT	2 cut(s)	159, 526
MlyI	GAGTC	1 cut(s)	223
MroXI	GAANNNNTTC	2 cut(s)	341, 633
MseI	TTAA	2 cut(s)	162, 243
MspA1I	CMGCKG	2 cut(s)	17, 215
MspI	CCGG	2 cut(s)	129, 653
MspR9I	CCNGG	4 cut(s)	32, 129, 499, 548
MvaI	CCWGG	3 cut(s)	32, 499, 548
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	6 cut(s)	23, 84, 103, 221, 254, 406
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	4 cut(s)	52, 131, 507, 511
NlaIII	CATG	3 cut(s)	61, 82, 333
NlaIV	GGNNCC	2 cut(s)	145, 545
NmuCI	GTSAC	1 cut(s)	721
PagI	TCATGA	1 cut(s)	57
PdmI	GAANNNNTTC	2 cut(s)	341, 633
PfeI	GAWTC	1 cut(s)	583
PflMI	CCANNNNNTGG	1 cut(s)	504
PinAI	ACCGGT	1 cut(s)	652
PkrI	GCNGC	4 cut(s)	11, 77, 214, 607
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PshAI	GACNNNNGTC	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	3 cut(s)	30, 497, 546
PspGI	CCWGG	3 cut(s)	30, 497, 546
PspN4I	GGNNCC	2 cut(s)	145, 545
PspPI	GGNCC	2 cut(s)	122, 373
PstI	CTGCAG	1 cut(s)	607
PstNI	CAGNNNCTG	1 cut(s)	504
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	69
SacII	CCGCGG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	162, 243
SatI	GCNGC	4 cut(s)	10, 76, 213, 606
Sau3AI	GATC	4 cut(s)	52, 131, 507, 511
Sau96I	GGNCC	2 cut(s)	122, 373
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	4 cut(s)	32, 129, 499, 548
SduI	GDGCHC	4 cut(s)	45, 69, 435, 747
SfaNI	GCATC	3 cut(s)	309, 387, 442
SfcI	CTRYAG	1 cut(s)	603
Sfr303I	CCGCGG	1 cut(s)	18
SgrBI	CCGCGG	1 cut(s)	18
SinI	GGWCC	1 cut(s)	373
SmlI	CTYRAG	2 cut(s)	614, 714
SmoI	CTYRAG	2 cut(s)	614, 714
Sse9I	AATT	2 cut(s)	159, 526
SsiI	CCGC	7 cut(s)	5, 15, 17, 73, 76, 213, 701
SspMI	CTAG	2 cut(s)	389, 698
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	4 cut(s)	30, 127, 497, 546
StyI	CCWWGG	2 cut(s)	362, 539
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	2 cut(s)	51, 510
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	2 cut(s)	159, 526
TauI	GCSGC	2 cut(s)	78, 215
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	2 cut(s)	162, 243
Tru9I	TTAA	2 cut(s)	162, 243
TseFI	GTSAC	1 cut(s)	721
TseI	GCWGC	2 cut(s)	9, 605
Tsp45I	GTSAC	1 cut(s)	721
TspDTI	ATGAA	6 cut(s)	95, 318, 324, 332, 334, 725
TspGWI	ACGGA	2 cut(s)	37, 604
Van91I	CCANNNNNTGG	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	2 cut(s)	191, 501
XmnI	GAANNNNTTC	2 cut(s)	341, 633
XspI	CTAG	2 cut(s)	389, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.