pycom14g17170

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0009848
Physical Location & Seq
Reverse (-)
19230220 .. 19232527
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1218 bp
ATGCAGCAGCAGAACCACCCCAACGCCAGTCGTCTTGTCCCTTTGTCTAATTATGACGTCACAGAGCTAAAATTGGAAAAGGGCCAGTTGGCCATGCATGGGCTTGGTGCGCTTCTTCGTACAGCCCAATCAAAGCCCACATGGAGCAGGAGCAGGGCTTGTGACACACTGGAATCAATTGTCGATCGAGCTACATGCCACAAACGTGACCCAAATATCATTCGCCATGACCAGATCCCGGCAAACACAAGCTCGGTGGTTGCATCCTCCGGCGAAACATGGACCGACAGCTCTGTTCAGGTGCCGCTGGCGCAGGGGTGGATAAGAAAACGCAGTCGATCAGATTCCGGCTTCTTCGAGAATAATTTTAGTACTAATAGCATTCATGAAGAACATGCAGATCCCAGCAGTTGTGCTAGTCCTGGTGCTAGTGTTAGATTGTGCAGGGACAATCATACAACTACATCTACGTTAGTTTCTTTTGAGTCTCCTTCCAGTTTGAAGACCAAAAGCACCGACGAGGATTCAGCCTCTCACGGAGGACTGGAAAACCGAGATGATGGCCGGAAAACCACCAAAGGTGGCAAATCAAGCCGTTCACACTCAACAAGACCAGGGCGAGCTGCTGCTGTTCATAATCAGTCAGAGCGGAAACGAAGAGACTTGATTAACCAGAAGATAAAAGCTCTGCAAAGGTTGGTGCCAAATGCAAGTAAGACTGATAAAGCTTCAATGATTGATGAGGTGATCAAATACTTGCAACAACTTCAAGCTCAAGTCCAAATGATGCATAATCTGAGAAATTTCATGCCTAATGGCCACATGAATATGAATATGATGGTGCCTTTAGAAATGATGCAGCAGCAGCAGCAGCAGCAACATCTTCATCAAATGTCACTCCTGGCTCATATGGGAATCGGAATGGGAACGCGCATTCATCCTACGCCGGTTGTGGCTGCCGCTCTTCCTTCTTTCATGCCGCCATTTATGATGCCGCTTTTAATGCCACCACACCCTCCTCCTCAAGCAAAGCCTGAACCAACCAGCACGAATAATGGTTCAGACCCTCTACCTGATCCATATTGTGCCCTCCTAGCACAACAATCAATGAATATGGACCTGTTCAACTGGATGGCAGCTCACTATCGCCAACAAGTCACTCCGGCAACAGCAGCGTCAAGCAGCCAGCCGCAGGTAAACCATGTTCGAAGGAACTAA

Protein Analysis

406

Amino Acids

44.97

Weight (kDa)

9.51

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 211 - 257 6.5e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009848)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61270 AT5G61270 AT5G61270
fragaria_vesca FvH4_5g14360
malus_domestica MD06G1199400.v1.1 MD14G1208000.v1.1
prunus_persica Prupe.5G200100_v2.0.a1
pyrus_communis pycom06g17620 pycom14g17170
rosa_chinensis RchiOBHm_Chr7g0182341
rosa_laevigata RLG00000005129
rosa_multiflora Rmu_sc0002070.1_g000014
rosa_roxburghii Rroxscaffold_3G00271290
rosa_rugosa Rorug06G0447100
rosa_samantha Rh7AG050200 Rh7AG050400 Rh7BG050200 Rh7CG051500 Rh7CG051700 Rh7DG049400
rosa_wichuraiana Rw7G004110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 1183
AccB1I GGYRCC 3 cut(s) 301, 700, 841
AccBSI CCGCTC 2 cut(s) 649, 962
AccII CGCG 1 cut(s) 931
AciI CCGC 6 cut(s) 305, 649, 960, 980, 995, 1190
AclWI GGATC 3 cut(s) 229, 395, 1070
AcoI YGGCCR 3 cut(s) 90, 562, 817
AcsI RAATTY 1 cut(s) 802
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 121, 373
AfiI CCNNNNNNNGG 3 cut(s) 99, 238, 1192
AgsI TTSAA 4 cut(s) 502, 732, 770, 1126
AjnI CCWGG 3 cut(s) 421, 613, 900
AleI CACNNNNGTG 1 cut(s) 204
AluBI AGCT 9 cut(s) 67, 191, 252, 291, 623, 686, 728, 773, 1139
AluI AGCT 9 cut(s) 67, 191, 252, 291, 623, 686, 728, 773, 1139
Alw26I GTCTC 2 cut(s) 492, 654
AlwI GGATC 3 cut(s) 229, 395, 1070
AoxI GGCC 4 cut(s) 82, 90, 562, 817
ApoI RAATTY 1 cut(s) 802
AspLEI GCGC 3 cut(s) 112, 313, 933
AspS9I GGNCC 3 cut(s) 82, 282, 1117
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 757
AsuII TTCGAA 1 cut(s) 1207
AvaII GGWCC 2 cut(s) 282, 1117
BaeGI GKGCMC 1 cut(s) 1090
BalI TGGCCA 2 cut(s) 92, 819
BanI GGYRCC 3 cut(s) 301, 700, 841
BbsI GAAGAC 1 cut(s) 509
BccI CCATC 3 cut(s) 554, 832, 1126
BceAI ACGGC 1 cut(s) 579
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BciT130I CCWGG 3 cut(s) 423, 615, 902
BclI TGATCA 1 cut(s) 747
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 492, 654
BfaI CTAG 3 cut(s) 417, 429, 1094
BfuAI ACCTGC 1 cut(s) 1183
BmcAI AGTACT 1 cut(s) 373
Bme1390I CCNGG 4 cut(s) 239, 423, 615, 902
Bme18I GGWCC 2 cut(s) 282, 1117
BmgT120I GGNCC 3 cut(s) 82, 282, 1117
BmiI GGNNCC 3 cut(s) 303, 702, 843
BmrFI CCNGG 4 cut(s) 239, 423, 615, 902
BmsI GCATC 4 cut(s) 272, 777, 846, 981
BpiI GAAGAC 1 cut(s) 509
Bpu14I TTCGAA 1 cut(s) 1207
BpuEI CTTGAG 2 cut(s) 759, 1008
BpuMI CCSGG 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 614
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 238, 1192
Bse118I RCCGGY 1 cut(s) 946
Bse1I ACTGG 6 cut(s) 27, 85, 174, 495, 549, 1133
BseBI CCWGG 3 cut(s) 423, 615, 902
BseDI CCNNGG 1 cut(s) 614
BseGI GGATG 3 cut(s) 263, 937, 1137
BseLI CCNNNNNNNGG 3 cut(s) 99, 238, 1192
BseMII CTCAG 1 cut(s) 788
BseNI ACTGG 6 cut(s) 27, 85, 174, 495, 549, 1133
BseRI GAGGAG 2 cut(s) 1008, 1011
BseSI GKGCMC 1 cut(s) 1090
BseYI CCCAGC 1 cut(s) 404
BsgI GTGCAG 1 cut(s) 463
Bsh1236I CGCG 1 cut(s) 931
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 4 cut(s) 84, 92, 564, 819
BshNI GGYRCC 3 cut(s) 301, 700, 841
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 6 cut(s) 239, 270, 348, 565, 947, 1163
BslFI GGGAC 2 cut(s) 23, 461
BslI CCNNNNNNNGG 3 cut(s) 99, 238, 1192
BsmAI GTCTC 2 cut(s) 492, 654
BsmFI GGGAC 2 cut(s) 23, 461
BsmI GAATGC 2 cut(s) 381, 933
BsnI GGCC 4 cut(s) 84, 92, 564, 819
Bsp119I TTCGAA 1 cut(s) 1207
Bsp1286I GDGCHC 1 cut(s) 1090
Bsp143I GATC 6 cut(s) 184, 234, 338, 400, 747, 1075
BspACI CCGC 6 cut(s) 305, 649, 960, 980, 995, 1190
BspANI GGCC 4 cut(s) 84, 92, 564, 819
BspCNI CTCAG 1 cut(s) 789
BspFNI CGCG 1 cut(s) 931
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 3 cut(s) 303, 702, 843
BspMI ACCTGC 1 cut(s) 1183
BspPI GGATC 3 cut(s) 229, 395, 1070
BspQI GCTCTTC 1 cut(s) 969
BspT104I TTCGAA 1 cut(s) 1207
BspT107I GGYRCC 3 cut(s) 301, 700, 841
BsrBI CCGCTC 2 cut(s) 649, 962
BsrFI RCCGGY 1 cut(s) 946
BsrI ACTGG 6 cut(s) 27, 85, 174, 495, 549, 1133
BssAI RCCGGY 1 cut(s) 946
BssECI CCNNGG 1 cut(s) 614
BssMI GATC 6 cut(s) 184, 234, 338, 400, 747, 1075
BssNI GRCGYC 1 cut(s) 57
Bst2UI CCWGG 3 cut(s) 423, 615, 902
Bst6I CTCTTC 2 cut(s) 652, 969
BstACI GRCGYC 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 1207
BstC8I GCNNGC 3 cut(s) 309, 621, 1187
BstDEI CTNAG 1 cut(s) 797
BstF5I GGATG 3 cut(s) 263, 937, 1137
BstFNI CGCG 1 cut(s) 931
BstHHI GCGC 3 cut(s) 112, 313, 933
BstKTI GATC 6 cut(s) 187, 237, 341, 403, 750, 1078
BstMAI GTCTC 2 cut(s) 492, 654
BstMBI GATC 6 cut(s) 184, 234, 338, 400, 747, 1075
BstMCI CGRYCG 1 cut(s) 187
BstNI CCWGG 3 cut(s) 423, 615, 902
BstNSI RCATGY 2 cut(s) 198, 398
BstSCI CCNGG 4 cut(s) 237, 421, 613, 900
BstSLI GKGCMC 1 cut(s) 1090
BstUI CGCG 1 cut(s) 931
BstV2I GAAGAC 1 cut(s) 509
BstX2I RGATCY 2 cut(s) 234, 400
BstYI RGATCY 2 cut(s) 234, 400
BsuRI GGCC 4 cut(s) 84, 92, 564, 819
BtsCI GGATG 3 cut(s) 263, 937, 1137
BtsIMutI CAGTG 1 cut(s) 167
BveI ACCTGC 1 cut(s) 1183
Cac8I GCNNGC 3 cut(s) 309, 621, 1187
CciI TCATGA 1 cut(s) 385
CfoI GCGC 3 cut(s) 112, 313, 933
Cfr10I RCCGGY 1 cut(s) 946
Cfr13I GGNCC 3 cut(s) 82, 282, 1117
CseI GACGC 1 cut(s) 1164
Csp6I GTAC 2 cut(s) 120, 372
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviQI GTAC 2 cut(s) 120, 372
DdeI CTNAG 1 cut(s) 797
DpnI GATC 6 cut(s) 186, 236, 340, 402, 749, 1077
DpnII GATC 6 cut(s) 184, 234, 338, 400, 747, 1075
EaeI YGGCCR 3 cut(s) 90, 562, 817
Eam1104I CTCTTC 2 cut(s) 652, 969
EarI CTCTTC 2 cut(s) 652, 969
Eco47I GGWCC 2 cut(s) 282, 1117
EcoRII CCWGG 3 cut(s) 421, 613, 900
EcoT22I ATGCAT 2 cut(s) 99, 792
FaqI GGGAC 2 cut(s) 23, 461
FauNDI CATATG 1 cut(s) 909
FbaI TGATCA 1 cut(s) 747
FokI GGATG 3 cut(s) 250, 924, 1144
FspBI CTAG 3 cut(s) 417, 429, 1094
GlaI GCGC 3 cut(s) 111, 312, 932
GsaI CCCAGC 1 cut(s) 408
HaeIII GGCC 4 cut(s) 84, 92, 564, 819
HapII CCGG 6 cut(s) 239, 270, 348, 565, 947, 1163
HgaI GACGC 1 cut(s) 1164
HhaI GCGC 3 cut(s) 112, 313, 933
Hin1I GRCGYC 1 cut(s) 57
Hin6I GCGC 3 cut(s) 110, 311, 931
HinP1I GCGC 3 cut(s) 110, 311, 931
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 5 cut(s) 173, 344, 485, 524, 915
HpaII CCGG 6 cut(s) 239, 270, 348, 565, 947, 1163
HphI GGTGA 1 cut(s) 757
Hpy166II GTNNAC 2 cut(s) 599, 1198
Hpy188I TCNGA 5 cut(s) 343, 646, 798, 920, 1063
Hpy188III TCNNGA 2 cut(s) 358, 386
Hpy8I GTNNAC 2 cut(s) 599, 1198
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 3 cut(s) 501, 978, 1203
HpyCH4IV ACGT 3 cut(s) 57, 205, 470
HpyF3I CTNAG 1 cut(s) 797
HpySE526I ACGT 3 cut(s) 57, 205, 470
Hsp92I GRCGYC 1 cut(s) 57
HspAI GCGC 3 cut(s) 110, 311, 931
Ksp22I TGATCA 1 cut(s) 747
Kzo9I GATC 6 cut(s) 184, 234, 338, 400, 747, 1075
LguI GCTCTTC 1 cut(s) 969
LmnI GCTCC 2 cut(s) 144, 150
LweI GCATC 4 cut(s) 272, 777, 846, 981
MaeI CTAG 3 cut(s) 417, 429, 1094
MaeII ACGT 3 cut(s) 57, 205, 470
MaeIII GTNAC 5 cut(s) 58, 161, 206, 894, 1156
MalI GATC 6 cut(s) 186, 236, 340, 402, 749, 1077
MbiI CCGCTC 2 cut(s) 649, 962
MboI GATC 6 cut(s) 184, 234, 338, 400, 747, 1075
MboII GAAGA 8 cut(s) 107, 346, 401, 514, 669, 688, 875, 956
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 2 cut(s) 234, 400
MhlI GDGCHC 1 cut(s) 1090
MlsI TGGCCA 2 cut(s) 92, 819
MluCI AATT 5 cut(s) 49, 71, 177, 364, 802
MluNI TGGCCA 2 cut(s) 92, 819
MlyI GAGTC 1 cut(s) 494
Mox20I TGGCCA 2 cut(s) 92, 819
Mph1103I ATGCAT 2 cut(s) 99, 792
MscI TGGCCA 2 cut(s) 92, 819
MseI TTAA 2 cut(s) 669, 1001
MslI CAYNNNNRTG 2 cut(s) 204, 827
Msp20I TGGCCA 2 cut(s) 92, 819
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 6 cut(s) 239, 270, 348, 565, 947, 1163
MspR9I CCNGG 4 cut(s) 239, 423, 615, 902
MunI CAATTG 1 cut(s) 177
Mva1269I GAATGC 2 cut(s) 381, 933
MvaI CCWGG 3 cut(s) 423, 615, 902
MvnI CGCG 1 cut(s) 931
NciI CCSGG 1 cut(s) 239
NdeI CATATG 1 cut(s) 909
NdeII GATC 6 cut(s) 184, 234, 338, 400, 747, 1075
NlaIV GGNNCC 3 cut(s) 303, 702, 843
NmuCI GTSAC 5 cut(s) 58, 161, 206, 894, 1156
NsiI ATGCAT 2 cut(s) 99, 792
NspI RCATGY 2 cut(s) 198, 398
NspV TTCGAA 1 cut(s) 1207
OliI CACNNNNGTG 1 cut(s) 204
PagI TCATGA 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 969
PctI GAATGC 2 cut(s) 381, 933
PfeI GAWTC 4 cut(s) 173, 344, 524, 915
Ple19I CGATCG 1 cut(s) 187
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Psp6I CCWGG 3 cut(s) 421, 613, 900
PspFI CCCAGC 1 cut(s) 404
PspGI CCWGG 3 cut(s) 421, 613, 900
PspN4I GGNNCC 3 cut(s) 303, 702, 843
PspPI GGNCC 3 cut(s) 82, 282, 1117
PsrI GAACNNNNNNTAC 1 cut(s) 1188
PsuI RGATCY 2 cut(s) 234, 400
PvuI CGATCG 1 cut(s) 187
RsaI GTAC 2 cut(s) 121, 373
RsaNI GTAC 2 cut(s) 120, 372
RseI CAYNNNNRTG 2 cut(s) 204, 827
SapI GCTCTTC 1 cut(s) 969
SaqAI TTAA 2 cut(s) 669, 1001
Sau3AI GATC 6 cut(s) 184, 234, 338, 400, 747, 1075
Sau96I GGNCC 3 cut(s) 82, 282, 1117
ScaI AGTACT 1 cut(s) 373
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 4 cut(s) 239, 423, 615, 902
SduI GDGCHC 1 cut(s) 1090
SfaNI GCATC 4 cut(s) 272, 777, 846, 981
SfuI TTCGAA 1 cut(s) 1207
SinI GGWCC 2 cut(s) 282, 1117
SmiMI CAYNNNNRTG 2 cut(s) 204, 827
SmlI CTYRAG 2 cut(s) 774, 1023
SmoI CTYRAG 2 cut(s) 774, 1023
Sse9I AATT 5 cut(s) 49, 71, 177, 364, 802
SsiI CCGC 6 cut(s) 305, 649, 960, 980, 995, 1190
SspMI CTAG 3 cut(s) 417, 429, 1094
StyD4I CCNGG 4 cut(s) 237, 421, 613, 900
TaiI ACGT 3 cut(s) 60, 208, 473
TaqI TCGA 5 cut(s) 183, 187, 337, 357, 1207
TaqII GACCGA 1 cut(s) 299
TasI AATT 5 cut(s) 49, 71, 177, 364, 802
TatI WGTACW 1 cut(s) 371
TauI GCSGC 5 cut(s) 307, 962, 982, 997, 1192
TfiI GAWTC 4 cut(s) 173, 344, 524, 915
Tru1I TTAA 2 cut(s) 669, 1001
Tru9I TTAA 2 cut(s) 669, 1001
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 5 cut(s) 58, 161, 206, 894, 1156
Tsp45I GTSAC 5 cut(s) 58, 161, 206, 894, 1156
TspGWI ACGGA 1 cut(s) 552
TspRI CASTG 1 cut(s) 174
VpaK11BI GGWCC 2 cut(s) 282, 1117
XapI RAATTY 1 cut(s) 802
XceI RCATGY 2 cut(s) 198, 398
XspI CTAG 3 cut(s) 417, 429, 1094
ZraI GACGTC 1 cut(s) 58
ZrmI AGTACT 1 cut(s) 373
Zsp2I ATGCAT 2 cut(s) 99, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.