Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011148

Physical Location & Seq

Genomic Coordinates Reverse (-)

19864487 .. 19865751

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAAGGCAGCGAAAGCGAGGCAGCATTCAATTCGCTGAATCTGAATCCACAGCTGTTCATCAACGACGTCTTAAACATCACCGATGACTTGGTCGACGACGCCTTCGATCATTTCCGCCAACAAGCATCAACCTCTCTGAAAATTGAGGGCACTGACAGAGCCCAAGATCTATCCAGGGGTGTTGATATCATCCGCAAAAAGGTTCAATCGATCTTGATAAAAAGCTGGGTGTCTGGGAGCAGTACTGCCTTGACTACGTTTTTCAAGTTCCAGAGGGGTTCGACCTGTCTAGGAATGATGAACTACCTGTCGACGCTTCTTTATGTCAAAATGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000444 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000818 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0008104 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034501 GO:0034502 GO:0034508 GO:0034613 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0051179 GO:0051276 GO:0051382 GO:0051383 GO:0051641 GO:0065003 GO:0065004 GO:0070013 GO:0070727 GO:0070925 GO:0071459 GO:0071824 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mis12

Protein Analysis

114

Amino Acids

12.67

Weight (kDa)

5.22

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mis12	PF05859	9 - 63	1.4e-06	Mis12 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35520
fragaria_vesca	FvH4_5g13000
malus_domestica	MD06G1208100.v1.1 MD14G1218500.v1.1
prunus_persica	Prupe.5G212600_v2.0.a1 Prupe.5G212600_v2.0.a1
pyrus_communis	pycom06g18590 pycom14g18110
rosa_chinensis	RchiOBHm_Chr7g0184161
rosa_laevigata	RLG00000004998
rosa_multiflora	Rmu_co8235265.1_g000001 Rmu_sc0012221.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269840
rosa_rugosa	Rorug06G0463400 Rorug06G0463500
rosa_samantha	Rh7AG082400 Rh7BG064800 Rh7CG065200 Rh7DG064900
rosa_wichuraiana	Rw7G005310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	72
AccI	GTMKAC	2 cut(s)	96, 314
AciI	CCGC	2 cut(s)	118, 196
AcyI	GRCGYC	2 cut(s)	69, 102
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	3 cut(s)	31, 209, 268
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	2 cut(s)	55, 228
AluI	AGCT	2 cut(s)	55, 228
ApeKI	GCWGC	2 cut(s)	9, 23
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AsuHPI	GGTGA	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	21, 35
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BciT130I	CCWGG	1 cut(s)	178
BfaI	CTAG	1 cut(s)	293
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	2 cut(s)	10, 24
BlsI	GCNGC	2 cut(s)	11, 25
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	212
BsaHI	GRCGYC	2 cut(s)	69, 102
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	178
BseCI	ATCGAT	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	21, 35
BseYI	CCCAGC	1 cut(s)	228
BshVI	ATCGAT	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	155, 166
Bsp143I	GATC	3 cut(s)	109, 169, 213
BspACI	CCGC	2 cut(s)	118, 196
BspDI	ATCGAT	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	109, 169, 213
BssNI	GRCGYC	2 cut(s)	69, 102
Bst2UI	CCWGG	1 cut(s)	178
BstACI	GRCGYC	2 cut(s)	69, 102
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	3 cut(s)	112, 172, 216
BstMBI	GATC	3 cut(s)	109, 169, 213
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	21, 35
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
Bsu15I	ATCGAT	1 cut(s)	212
BsuTUI	ATCGAT	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	212
CseI	GACGC	2 cut(s)	110, 325
Csp6I	GTAC	1 cut(s)	246
CviJI	RGCY	3 cut(s)	55, 164, 228
CviKI_1	RGCY	3 cut(s)	55, 164, 228
CviQI	GTAC	1 cut(s)	246
DpnI	GATC	3 cut(s)	111, 171, 215
DpnII	GATC	3 cut(s)	109, 169, 213
EciI	GGCGGA	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	166
Eco32I	GATATC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	166
FaiI	YATR	1 cut(s)	327
FblI	GTMKAC	2 cut(s)	96, 314
Fnu4HI	GCNGC	2 cut(s)	10, 24
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	10, 24
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	2 cut(s)	10, 24
GsaI	CCCAGC	1 cut(s)	232
HgaI	GACGC	2 cut(s)	110, 325
Hin1I	GRCGYC	2 cut(s)	69, 102
HincII	GTYRAC	2 cut(s)	97, 315
HindII	GTYRAC	2 cut(s)	97, 315
HinfI	GANTC	2 cut(s)	40, 46
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	97, 315
Hpy188I	TCNGA	2 cut(s)	45, 141
Hpy188III	TCNNGA	2 cut(s)	217, 274
Hpy8I	GTNNAC	2 cut(s)	97, 315
Hpy99I	CGWCG	4 cut(s)	71, 101, 104, 319
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	2 cut(s)	69, 260
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpySE526I	ACGT	2 cut(s)	69, 260
Hsp92I	GRCGYC	2 cut(s)	69, 102
Kzo9I	GATC	3 cut(s)	109, 169, 213
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	7 cut(s)	163, 190, 214, 222, 287, 301, 323
Lsp1109I	GCAGC	2 cut(s)	21, 35
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	2 cut(s)	69, 260
MalI	GATC	3 cut(s)	111, 171, 215
MboI	GATC	3 cut(s)	109, 169, 213
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	155, 166
MluCI	AATT	2 cut(s)	31, 144
MnlI	CCTC	4 cut(s)	13, 142, 145, 270
MseI	TTAA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	3 cut(s)	109, 169, 213
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	40, 46
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	11, 25
Psp6I	CCWGG	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	169
PsyI	GACNNNGTC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SalI	GTCGAC	2 cut(s)	95, 313
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	2 cut(s)	10, 24
Sau3AI	GATC	3 cut(s)	109, 169, 213
ScaI	AGTACT	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	2 cut(s)	155, 166
SetI	ASST	8 cut(s)	57, 72, 137, 207, 230, 263, 290, 312
SfaNI	GCATC	1 cut(s)	137
Sse9I	AATT	2 cut(s)	31, 144
SsiI	CCGC	2 cut(s)	118, 196
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	176
TaiI	ACGT	2 cut(s)	72, 263
TaqI	TCGA	5 cut(s)	96, 108, 212, 284, 314
TasI	AATT	2 cut(s)	31, 144
TatI	WGTACW	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	40, 46
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	2 cut(s)	9, 23
TspDTI	ATGAA	2 cut(s)	49, 317
TspRI	CASTG	1 cut(s)	160
Tth111I	GACNNNGTC	1 cut(s)	92
XmiI	GTMKAC	2 cut(s)	96, 314
XspI	CTAG	1 cut(s)	293
ZraI	GACGTC	1 cut(s)	70
ZrmI	AGTACT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.