Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008501

Physical Location & Seq

Genomic Coordinates Reverse (-)

20032672 .. 20033724

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGATTGTCCCTCGAAGTTGCCCGTAAGTTCTTTGGCTTGCAAGATGTGTTGGAATTTGACAAGGCCAGCAAAACCGTGGAGTGGTTGCTCATTCAGTCAGAACCCGAAATCAAGAAACTATCAAGAGATCACCATCGGAAATTCAACTACAAAAACATGGTGAGATGTGCCAAAACCACGTCTCCAGCCACTTCGGAATCGTGTGAAATACTATCCGGCGTAGACGAGGCTCCAACAAACATTAACATTAGTAATGGTGGCAACGATGATAATGATAAAGTAAGAAGCTGCGGGATCAAACCCTCAGCCAAAGAGAGAAAGATTGTCCACAGGCAATCAAGGAAGCGCGCATTTCACCCTCTTGCAAAGGCTTCGAGGGAAAAGGCAAGGGCAAGGGCTAGGGAAAGAACAAGAGAAAAGATGCAGAGATCAAAGAAGCCTAGTAATGACCAGGCAAAACTAAGCCGTTTGAATTCTTGGAACCCATTTGAAAGTGGGGAAGAATCATCAGCTTACAACAACAATATGAACAATACTGCTAACGATCAGCCTGATTCACTTGTGGCGTTGCGACCTTACCCCGATGGGGTTGAAGAACCATTAAGCAGCTCCCTAGCCGGAGATATTCAAGACATGGTTGTTGATCATGGTGCTACTCATGATGCTATGGTGGTAATGGGAAAATGGAGCCCTTCTTCAGTGTTCACTCCTCTCCAGCAAAGTACTGGAATTTCCCAAGAGCACCAACAGTTTGCCGACTTTCAATTCTTTGACAAACCGTGGGACGTCTACAACAATACTCATAAGCTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905393 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

273

Amino Acids

30.88

Weight (kDa)

9.02

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	1 - 144	4.1e-31	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18550 AT3G18550 AT3G18550 AT3G18550
fragaria_vesca	FvH4_5g12710
malus_domestica	MD06G1211100.v1.1 MD14G1221800.v1.1
prunus_persica	Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1
pyrus_communis	pycom06g18840 pycom14g18340
rosa_chinensis	RchiOBHm_Chr7g0184601
rosa_laevigata	RLG00000004965
rosa_multiflora	Rmu_co8093794.1_g000001 Rmu_ssc0000289.1_g000032 Rmu_ssc0000289.1_g000033
rosa_roxburghii	Rroxscaffold_3G00269490
rosa_samantha	Rh7AG079000 Rh7BG068300 Rh7CG069100 Rh7DG068400
rosa_wichuraiana	Rw7G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	792
AccI	GTMKAC	2 cut(s)	225, 792
AccII	CGCG	1 cut(s)	351
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	4 cut(s)	56, 143, 475, 732
AcuI	CTGAAG	1 cut(s)	684
AcyI	GRCGYC	1 cut(s)	789
AfaI	GTAC	1 cut(s)	727
AfiI	CCNNNNNNNGG	2 cut(s)	84, 589
AgsI	TTSAA	6 cut(s)	148, 475, 494, 596, 632, 767
AjiI	CACGTC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	4 cut(s)	291, 515, 612, 811
AluI	AGCT	4 cut(s)	291, 515, 612, 811
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	291, 609
ApoI	RAATTY	4 cut(s)	56, 143, 475, 732
AspLEI	GCGC	2 cut(s)	351, 353
AsuHPI	GGTGA	3 cut(s)	125, 175, 350
BanII	GRGCYC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	747
BbvCI	CCTCAGC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	278, 621
BccI	CCATC	2 cut(s)	144, 581
BceAI	ACGGC	1 cut(s)	453
BcgI	CGANNNNNNTGC	2 cut(s)	357, 391
BciT130I	CCWGG	1 cut(s)	455
BclI	TGATCA	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	3 cut(s)	402, 444, 617
BisI	GCNGC	2 cut(s)	292, 610
BlsI	GCNGC	2 cut(s)	293, 611
BmcAI	AGTACT	1 cut(s)	727
Bme1390I	CCNGG	1 cut(s)	455
BmgBI	CACGTC	1 cut(s)	183
BmiI	GGNNCC	3 cut(s)	234, 485, 692
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	2 cut(s)	414, 655
BpmI	CTGGAG	2 cut(s)	171, 701
Bpu10I	CCTNAGC	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	789
BsaJI	CCNNGG	2 cut(s)	78, 782
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 589
Bse1I	ACTGG	1 cut(s)	733
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	78, 782
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	84, 589
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	733
BsePI	GCGCGC	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	702
BseXI	GCAGC	2 cut(s)	278, 621
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	2 cut(s)	219, 621
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	2 cut(s)	84, 589
BsmAI	GTCTC	1 cut(s)	189
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	800
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	695, 747
Bsp143I	GATC	5 cut(s)	130, 297, 431, 547, 646
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	320
BspFNI	CGCG	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	3 cut(s)	234, 485, 692
BspPI	GGATC	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	733
BssECI	CCNNGG	2 cut(s)	78, 782
BssHII	GCGCGC	1 cut(s)	349
BssMI	GATC	5 cut(s)	130, 297, 431, 547, 646
BssNI	GRCGYC	1 cut(s)	789
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	3 cut(s)	79, 753, 783
BstACI	GRCGYC	1 cut(s)	789
BstC8I	GCNNGC	3 cut(s)	41, 70, 351
BstDEI	CTNAG	2 cut(s)	307, 464
BstDSI	CCRYGG	2 cut(s)	78, 782
BstFNI	CGCG	1 cut(s)	351
BstHHI	GCGC	2 cut(s)	351, 353
BstKTI	GATC	5 cut(s)	133, 300, 434, 550, 649
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	5 cut(s)	130, 297, 431, 547, 646
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	278, 621
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	2 cut(s)	78, 782
BtrI	CACGTC	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	3 cut(s)	41, 70, 351
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	2 cut(s)	351, 353
Csp6I	GTAC	1 cut(s)	726
CviAII	CATG	4 cut(s)	160, 637, 650, 662
CviQI	GTAC	1 cut(s)	726
DdeI	CTNAG	2 cut(s)	307, 464
DpnI	GATC	5 cut(s)	132, 299, 433, 549, 648
DpnII	GATC	5 cut(s)	130, 297, 431, 547, 646
Eco24I	GRGCYC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	684
EcoRI	GAATTC	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	695
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	4 cut(s)	163, 640, 653, 665
FaiI	YATR	7 cut(s)	161, 530, 638, 651, 663, 671, 807
FaqI	GGGAC	1 cut(s)	800
FatI	CATG	4 cut(s)	159, 636, 649, 661
FauI	CCCGC	1 cut(s)	287
FbaI	TGATCA	1 cut(s)	646
FblI	GTMKAC	2 cut(s)	225, 792
Fnu4HI	GCNGC	2 cut(s)	292, 610
FriOI	GRGCYC	1 cut(s)	695
Fsp4HI	GCNGC	2 cut(s)	292, 610
FspBI	CTAG	3 cut(s)	402, 444, 617
GlaI	GCGC	2 cut(s)	350, 352
GluI	GCNGC	2 cut(s)	292, 610
GsuI	CTGGAG	2 cut(s)	171, 701
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	2 cut(s)	219, 621
HhaI	GCGC	2 cut(s)	351, 353
Hin1I	GRCGYC	1 cut(s)	789
Hin1II	CATG	4 cut(s)	163, 640, 653, 665
Hin6I	GCGC	2 cut(s)	349, 351
HinP1I	GCGC	2 cut(s)	349, 351
HinfI	GANTC	3 cut(s)	200, 506, 557
HpaII	CCGG	2 cut(s)	219, 621
HphI	GGTGA	3 cut(s)	125, 175, 350
Hpy166II	GTNNAC	4 cut(s)	226, 331, 708, 793
Hpy188I	TCNGA	3 cut(s)	103, 141, 199
Hpy188III	TCNNGA	4 cut(s)	115, 126, 632, 662
Hpy8I	GTNNAC	4 cut(s)	226, 331, 708, 793
HpyAV	CCTTC	1 cut(s)	705
HpyCH4III	ACNGT	3 cut(s)	79, 753, 783
HpyCH4IV	ACGT	2 cut(s)	182, 789
HpyCH4V	TGCA	3 cut(s)	43, 368, 427
HpyF3I	CTNAG	2 cut(s)	307, 464
HpySE526I	ACGT	2 cut(s)	182, 789
Hsp92I	GRCGYC	1 cut(s)	789
Hsp92II	CATG	4 cut(s)	163, 640, 653, 665
HspAI	GCGC	2 cut(s)	349, 351
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	5 cut(s)	130, 297, 431, 547, 646
LmnI	GCTCC	3 cut(s)	238, 617, 690
Lsp1109I	GCAGC	2 cut(s)	278, 621
LweI	GCATC	2 cut(s)	414, 655
MaeI	CTAG	3 cut(s)	402, 444, 617
MaeII	ACGT	2 cut(s)	182, 789
MalI	GATC	5 cut(s)	132, 299, 433, 549, 648
MboI	GATC	5 cut(s)	130, 297, 431, 547, 646
MboII	GAAGA	3 cut(s)	515, 608, 690
MhlI	GDGCHC	2 cut(s)	695, 747
MluCI	AATT	5 cut(s)	56, 143, 475, 732, 767
MmeI	TCCRAC	2 cut(s)	33, 260
MnlI	CCTC	6 cut(s)	23, 223, 316, 372, 372, 723
MseI	TTAA	2 cut(s)	246, 605
MspI	CCGG	2 cut(s)	219, 621
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	351
NdeII	GATC	5 cut(s)	130, 297, 431, 547, 646
NlaIII	CATG	4 cut(s)	163, 640, 653, 665
NlaIV	GGNNCC	3 cut(s)	234, 485, 692
PagI	TCATGA	1 cut(s)	661
PauI	GCGCGC	1 cut(s)	349
PfeI	GAWTC	3 cut(s)	200, 506, 557
PkrI	GCNGC	2 cut(s)	293, 611
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	3 cut(s)	234, 485, 692
PteI	GCGCGC	1 cut(s)	349
RsaI	GTAC	1 cut(s)	727
RsaNI	GTAC	1 cut(s)	726
SaqAI	TTAA	2 cut(s)	246, 605
SatI	GCNGC	2 cut(s)	292, 610
Sau3AI	GATC	5 cut(s)	130, 297, 431, 547, 646
ScaI	AGTACT	1 cut(s)	727
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	2 cut(s)	695, 747
SetI	ASST	7 cut(s)	185, 293, 517, 580, 614, 792, 813
SfaNI	GCATC	2 cut(s)	414, 655
Sse9I	AATT	5 cut(s)	56, 143, 475, 732, 767
SsiI	CCGC	1 cut(s)	294
SspMI	CTAG	3 cut(s)	402, 444, 617
StyD4I	CCNGG	1 cut(s)	453
TaaI	ACNGT	3 cut(s)	79, 753, 783
TaiI	ACGT	2 cut(s)	185, 792
TaqI	TCGA	2 cut(s)	15, 377
TasI	AATT	5 cut(s)	56, 143, 475, 732, 767
TatI	WGTACW	1 cut(s)	725
TfiI	GAWTC	3 cut(s)	200, 506, 557
Tru1I	TTAA	2 cut(s)	246, 605
Tru9I	TTAA	2 cut(s)	246, 605
TscAI	CASTG	1 cut(s)	708
TseI	GCWGC	2 cut(s)	291, 609
TspDTI	ATGAA	1 cut(s)	545
TspRI	CASTG	1 cut(s)	708
XapI	RAATTY	4 cut(s)	56, 143, 475, 732
XcmI	CCANNNNNNNNNTGG	2 cut(s)	76, 725
XmiI	GTMKAC	2 cut(s)	225, 792
XspI	CTAG	3 cut(s)	402, 444, 617
ZraI	GACGTC	1 cut(s)	790
ZrmI	AGTACT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.