Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004941

Physical Location & Seq

Genomic Coordinates Reverse (-)

20933752 .. 20934934

Gene Structure 1183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATTCCGGGAATTTCTTTGAACTCTCTCTTGTTAGTTGCAAATGTATTGGTGCTTATGTTCGGAACAAAAAGAATCAAAATCAGATCGTGCTGGTTATGGCAGAAAGTCCCTTCAGAAAATGATAGAGGGTTCCAGCGGGTCTTGGATAATGTTCAGTACAAAAATAATGGTATACTACGATATGAGCGTGTCTTTGGGCGAGGTTTCGTGAGCACAGGATCGATCGAAACTACGAAAGAATTTGTGGCAAAGTTGGATCTGAAGCCTGGCCAGAAAGTTCTTGATGTAGGCTGTGGCATCGGGGGAGGTGACTTCTATATGGCCTCAAACTTTGATGTTGAGGTTATTGGCATTGACCTCTCTGTGAATATGATTTCTTTTGCTCTCGAACAATCCATTGGACTCAAATGCGCTGTCGAGTTTGAAGTTGCTGATTGCACAAAAAAGACTTATCCTGACAATACCTTTGACGTGATATACAGCCGCGACACCATTTTACACATTCAAGACAAGCCTGCATTATTCCGATCCTTCTACGAGTGGTTGAAGCCAGGCGGTAAAGTTCTCATCAGTGATTACTGTAGGTGTGCTGGAACTCCATCGGAAAACTTTGCTGAGTATATTAAGCAAAGGGGATACGATCTCCATGATGTAAAAGCTTATGGTCAGATGCTCAAGGACGCTGGTTTTTATGAGGTCATTGCTGAGGATCGATCAATATGTTGTACATATCGATCAGTTCAAAGCAGTTCTGGAGCGGGAACTGGATGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009308 GO:0009309 GO:0009555 GO:0009605 GO:0009653 GO:0009791 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010183 GO:0016043 GO:0016049 GO:0016740 GO:0016741 GO:0019637 GO:0019695 GO:0022414 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0040007 GO:0040011 GO:0042133 GO:0042136 GO:0042221 GO:0042330 GO:0042401 GO:0042425 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048229 GO:0048364 GO:0048468 GO:0048528 GO:0048588 GO:0048589 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050918 GO:0051704 GO:0052667 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090407 GO:0090696 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 Methyltransf_31

Protein Analysis

260

Amino Acids

28.96

Weight (kDa)

6.81

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	78 - 197	2.3e-10	ubiE/COQ5 methyltransferase family
CMAS	PF02353	80 - 193	7.6e-14	Mycolic acid cyclopropane synthetase
Methyltransf_23	PF13489	83 - 232	7.6e-20	Methyltransferase domain
Methyltransf_31	PF13847	89 - 200	8.1e-22	Methyltransferase domain
Methyltransf_25	PF13649	94 - 187	4e-19	Methyltransferase domain
Methyltransf_11	PF08241	95 - 191	1.9e-19	Methyltransferase domain
Methyltransf_12	PF08242	95 - 188	2.4e-13	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48600 AT1G73600 AT1G73600 AT3G18000
fragaria_vesca	FvH4_5g17300 FvH4_5g17300 FvH4_5g17300 FvH4_5g17300
malus_domestica	MD06G1226700.v1.1 MD14G1236000.v1.1
prunus_persica	Prupe.5G233000_v2.0.a1 Prupe.5G233000_v2.0.a1
pyrus_communis	pycom06g20300 pycom14g19710
rosa_chinensis	RchiOBHm_Chr3g0488691 RchiOBHm_Chr7g0178471
rosa_laevigata	RLG00000005444
rosa_multiflora	Rmu_sc0001208.1_g000086 Rmu_sc0010235.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274870 Rroxscaffold_6G00393940
rosa_rugosa	Rorug03G0240800 Rorug06G0417300 Rorug06G0417400
rosa_samantha	Rh3BG325800 Rh3CG323300 Rh7BG015500 Rh7CG016200
rosa_wichuraiana	Rw0G013680 Rw7G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	761
AccI	GTMKAC	1 cut(s)	175
AccII	CGCG	1 cut(s)	489
AciI	CCGC	4 cut(s)	139, 487, 558, 761
AclWI	GGATC	4 cut(s)	229, 267, 525, 720
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	12, 242
AcuI	CTGAAG	2 cut(s)	99, 284
AfaI	GTAC	2 cut(s)	161, 730
AgsI	TTSAA	5 cut(s)	22, 428, 509, 550, 746
AjiI	CACGTC	1 cut(s)	475
AjnI	CCWGG	2 cut(s)	268, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	1 cut(s)	662
AluI	AGCT	1 cut(s)	662
Alw21I	GWGCWC	1 cut(s)	218
AlwI	GGATC	4 cut(s)	229, 267, 525, 720
AoxI	GGCC	2 cut(s)	271, 324
ApoI	RAATTY	2 cut(s)	12, 242
ArsI	GACNNNNNNTTYG	4 cut(s)	402, 434, 452, 484
AspLEI	GCGC	1 cut(s)	416
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	218
BbvCI	CCTCAGC	1 cut(s)	708
BccI	CCATC	1 cut(s)	610
BciT130I	CCWGG	2 cut(s)	270, 555
BciVI	GTATCC	1 cut(s)	632
BcnI	CCSGG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	583
BfuI	GTATCC	1 cut(s)	632
BisI	GCNGC	1 cut(s)	487
BlsI	GCNGC	1 cut(s)	488
Bme1390I	CCNGG	3 cut(s)	9, 270, 555
BmgBI	CACGTC	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	3 cut(s)	9, 270, 555
BmsI	GCATC	3 cut(s)	309, 663, 761
BpmI	CTGGAG	1 cut(s)	777
Bpu10I	CCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	9
Bsa29I	ATCGAT	3 cut(s)	224, 715, 736
Bse1I	ACTGG	1 cut(s)	772
Bse3DI	GCAATG	1 cut(s)	702
BseBI	CCWGG	2 cut(s)	270, 555
BseCI	ATCGAT	3 cut(s)	224, 715, 736
BseGI	GGATG	1 cut(s)	776
BseMI	GCAATG	1 cut(s)	702
BseMII	CTCAG	2 cut(s)	609, 699
BseNI	ACTGG	1 cut(s)	772
Bsh1236I	CGCG	1 cut(s)	489
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	273, 326
BshVI	ATCGAT	3 cut(s)	224, 715, 736
BsiEI	CGRYCG	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	273, 326
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp1407I	TGTACA	1 cut(s)	728
Bsp143I	GATC	9 cut(s)	86, 221, 225, 259, 530, 643, 712, 716, 737
BspACI	CCGC	4 cut(s)	139, 487, 558, 761
BspANI	GGCC	2 cut(s)	273, 326
BspCNI	CTCAG	2 cut(s)	610, 700
BspDI	ATCGAT	3 cut(s)	224, 715, 736
BspFNI	CGCG	1 cut(s)	489
BspLI	GGNNCC	1 cut(s)	134
BspPI	GGATC	4 cut(s)	229, 267, 525, 720
BsrBI	CCGCTC	1 cut(s)	761
BsrDI	GCAATG	1 cut(s)	702
BsrGI	TGTACA	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	772
BssMI	GATC	9 cut(s)	86, 221, 225, 259, 530, 643, 712, 716, 737
BssNAI	GTATAC	1 cut(s)	176
Bst1107I	GTATAC	1 cut(s)	176
Bst2UI	CCWGG	2 cut(s)	270, 555
Bst4CI	ACNGT	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	728
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	2 cut(s)	618, 708
BstF5I	GGATG	1 cut(s)	776
BstFNI	CGCG	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	9 cut(s)	89, 224, 228, 262, 533, 646, 715, 719, 740
BstMBI	GATC	9 cut(s)	86, 221, 225, 259, 530, 643, 712, 716, 737
BstMCI	CGRYCG	1 cut(s)	228
BstNI	CCWGG	2 cut(s)	270, 555
BstSCI	CCNGG	3 cut(s)	7, 268, 553
BstSFI	CTRYAG	1 cut(s)	583
BstUI	CGCG	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BstZ17I	GTATAC	1 cut(s)	176
Bsu15I	ATCGAT	3 cut(s)	224, 715, 736
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	2 cut(s)	273, 326
BsuTUI	ATCGAT	3 cut(s)	224, 715, 736
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	1 cut(s)	776
BtsIMutI	CAGTG	1 cut(s)	580
Cac8I	GCNNGC	1 cut(s)	519
CfoI	GCGC	1 cut(s)	416
ClaI	ATCGAT	3 cut(s)	224, 715, 736
CseI	GACGC	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	160, 729
CviAII	CATG	1 cut(s)	650
CviJI	RGCY	8 cut(s)	268, 273, 294, 326, 486, 517, 553, 662
CviKI_1	RGCY	8 cut(s)	268, 273, 294, 326, 486, 517, 553, 662
CviQI	GTAC	2 cut(s)	160, 729
DdeI	CTNAG	2 cut(s)	618, 708
DpnI	GATC	9 cut(s)	88, 223, 227, 261, 532, 645, 714, 718, 739
DpnII	GATC	9 cut(s)	86, 221, 225, 259, 530, 643, 712, 716, 737
EaeI	YGGCCR	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	99, 284
EcoRII	CCWGG	2 cut(s)	268, 553
FaeI	CATG	1 cut(s)	653
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	649
FauI	CCCGC	2 cut(s)	132, 754
FblI	GTMKAC	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	487
Fsp4HI	GCNGC	1 cut(s)	487
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	1 cut(s)	487
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	2 cut(s)	273, 326
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	692
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	1 cut(s)	653
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	3 cut(s)	4, 75, 405
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	7 cut(s)	65, 86, 118, 264, 530, 607, 672
Hpy188III	TCNNGA	6 cut(s)	211, 284, 389, 458, 509, 756
Hpy8I	GTNNAC	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	123, 544
HpyCH4III	ACNGT	1 cut(s)	584
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	3 cut(s)	41, 441, 521
HpyF3I	CTNAG	2 cut(s)	618, 708
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	1 cut(s)	653
HspAI	GCGC	1 cut(s)	414
Kzo9I	GATC	9 cut(s)	86, 221, 225, 259, 530, 643, 712, 716, 737
LmnI	GCTCC	1 cut(s)	758
LweI	GCATC	3 cut(s)	309, 663, 761
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	9 cut(s)	88, 223, 227, 261, 532, 645, 714, 718, 739
MbiI	CCGCTC	1 cut(s)	761
MboI	GATC	9 cut(s)	86, 221, 225, 259, 530, 643, 712, 716, 737
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	2 cut(s)	12, 242
MluNI	TGGCCA	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	399
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	8 cut(s)	122, 197, 302, 337, 337, 371, 691, 703
Mox20I	TGGCCA	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	1 cut(s)	627
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	3 cut(s)	9, 270, 555
MvaI	CCWGG	2 cut(s)	270, 555
MvnI	CGCG	1 cut(s)	489
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	9 cut(s)	86, 221, 225, 259, 530, 643, 712, 716, 737
NlaIII	CATG	1 cut(s)	653
NlaIV	GGNNCC	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	4, 75
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	488
Ple19I	CGATCG	1 cut(s)	228
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	268, 553
PspGI	CCWGG	2 cut(s)	268, 553
PspN4I	GGNNCC	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	259
PvuI	CGATCG	1 cut(s)	228
RsaI	GTAC	2 cut(s)	161, 730
RsaNI	GTAC	2 cut(s)	160, 729
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	1 cut(s)	487
Sau3AI	GATC	9 cut(s)	86, 221, 225, 259, 530, 643, 712, 716, 737
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	3 cut(s)	9, 270, 555
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	9 cut(s)	208, 313, 348, 363, 470, 477, 590, 664, 702
SfaNI	GCATC	3 cut(s)	309, 663, 761
SfcI	CTRYAG	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	2 cut(s)	12, 242
SsiI	CCGC	4 cut(s)	139, 487, 558, 761
StyD4I	CCNGG	3 cut(s)	7, 268, 553
TaaI	ACNGT	1 cut(s)	584
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	6 cut(s)	224, 228, 390, 420, 715, 736
TasI	AATT	2 cut(s)	12, 242
TatI	WGTACW	2 cut(s)	159, 728
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	2 cut(s)	4, 75
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	311
TspRI	CASTG	1 cut(s)	580
XapI	RAATTY	2 cut(s)	12, 242
XmiI	GTMKAC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.