Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004941

Physical Location & Seq

Genomic Coordinates Forward (+)

988685 .. 992604

Gene Structure 3920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG015500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTGTGCTGATGTGACATCCCCCGACCTGAAGATATCTGAAGAATCAGTGGATTTGGTATTCTCAAACTGGCTTCTTATGTATCTATCTGATAAGGAGGTGGAGAATTTGGCAGAAAGGATGATGAAATGGTTGAAGGTTGGTGGATATATTTTCTTCCGAGAATCTTGTTTCCACCAATCCGGAGACTCTAAGCGGAAATACAACCCAACCCATTACCGAGAGCCCCGATTTTACAGCAGGGTGTTTAAAGAATGCCATATGTGTGATGAATCTGGGAATAACTTTGAACTCTCTCTTGTTAGCTGCAAATGTATTGGAGCTTATGTTCGGAACAAAAAGAATCAAAATCAGATTTGCTGGATATGGCAGAAGGTTGCTTCACAGAATGATAGAAAGTTCCAGCAGTTCTTAGATAATGTCCAGTATAAGAGTAATGGCATATTAAGATATGAGCGTGTCTTTGGACGGGGATTTGTGAGCACAGGAGGCATTGAGACAACTAAGGAATTTGTGGCAAAGTTGGAACTTGAGCCTGGCCAGAAAGTTTTAGATGTTGGCTGTGGAATTGGGGGAGGTGACTTTTACATGGCCAGTACCTTTGATGTTGAGGTTGTTGGCATTGACCTCTCTGTAAACATGATTTCCTTTGCCCTTGAACAATCCATTGGACTGAAATGTGCTGTTGAGTTTGAAGTTGTGGATTGCACCACAAAAACATATCCAGACAACACCTTTGATGTGATATACAGCCGCGATACCATTTTACACATTCAAGACAAGCCTGCATTATTCCGATCCTTTTACAAGTGGTTGAAGCCAGGAGGTAAAGTTCTCATCACTGACTACTGTAGGAGTGCTGGAACTCCTTCTGCAGATTTTGCCGAGTACATAAAGCAAAGAGGATATGACCTCCATGATGTAAAAGCATATGGTCAGATGCTTACGGATGCTGGTTTTGATGATGTCATTGCTGAGGATCGTACTGATCAGTTCATTAAAGTTCTGCAGCGGGAATTGAATGCCGTTGAGAAGGACAAGGATGCATTCATTGAGGACTTTTCTGAAGAGGACTACAATGACATAGTTGGTGGATGGAAGGCAAAGCTGGTCAGGACCAACTCAGGAGAGCAGAAGTGGGGCCTCTTCATTGCCAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009308 GO:0009309 GO:0009555 GO:0009605 GO:0009653 GO:0009791 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010183 GO:0016043 GO:0016049 GO:0016740 GO:0016741 GO:0019637 GO:0019695 GO:0022414 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0040007 GO:0040011 GO:0042133 GO:0042136 GO:0042221 GO:0042330 GO:0042401 GO:0042425 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048229 GO:0048364 GO:0048468 GO:0048528 GO:0048588 GO:0048589 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050918 GO:0051704 GO:0052667 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090407 GO:0090696 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 Methyltransf_31

Protein Analysis

388

Amino Acids

44.54

Weight (kDa)

5.5

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CMAS	PF02353	169 - 358	6.8e-14	Mycolic acid cyclopropane synthetase
Ubie_methyltran	PF01209	169 - 286	3.6e-09	ubiE/COQ5 methyltransferase family
Methyltransf_23	PF13489	171 - 323	8.1e-20	Methyltransferase domain
Methyltransf_31	PF13847	178 - 287	2.1e-20	Methyltransferase domain
Methyltransf_25	PF13649	183 - 276	4.9e-18	Methyltransferase domain
Methyltransf_11	PF08241	184 - 280	1.5e-18	Methyltransferase domain
Methyltransf_12	PF08242	184 - 277	2.5e-13	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48600 AT1G73600 AT1G73600 AT3G18000
fragaria_vesca	FvH4_5g17300 FvH4_5g17300 FvH4_5g17300 FvH4_5g17300
malus_domestica	MD06G1226700.v1.1 MD14G1236000.v1.1
prunus_persica	Prupe.5G233000_v2.0.a1 Prupe.5G233000_v2.0.a1
pyrus_communis	pycom06g20300 pycom14g19710
rosa_chinensis	RchiOBHm_Chr3g0488691 RchiOBHm_Chr7g0178471
rosa_laevigata	RLG00000005444
rosa_multiflora	Rmu_sc0001208.1_g000086 Rmu_sc0010235.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274870 Rroxscaffold_6G00393940
rosa_rugosa	Rorug03G0240800 Rorug06G0417300 Rorug06G0417400
rosa_samantha	Rh3BG325800 Rh3CG323300 Rh7BG015500 Rh7CG016200
rosa_wichuraiana	Rw0G013680 Rw7G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	756
AccIII	TCCGGA	1 cut(s)	182
AciI	CCGC	3 cut(s)	196, 754, 1012
AclWI	GGATC	2 cut(s)	792, 987
AcoI	YGGCCR	2 cut(s)	538, 591
AcsI	RAATTY	2 cut(s)	106, 509
AcuI	CTGAAG	3 cut(s)	50, 60, 1086
AfaI	GTAC	3 cut(s)	598, 890, 985
AgsI	TTSAA	7 cut(s)	136, 290, 659, 695, 776, 817, 1021
AjnI	CCWGG	2 cut(s)	535, 820
AjuI	GAANNNNNNNTTGG	2 cut(s)	651, 683
AloI	GAACNNNNNNTCC	4 cut(s)	312, 344, 816, 848
AluBI	AGCT	3 cut(s)	306, 323, 1108
AluI	AGCT	3 cut(s)	306, 323, 1108
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	2 cut(s)	180, 491
AlwI	GGATC	2 cut(s)	792, 987
Aor13HI	TCCGGA	1 cut(s)	182
AoxI	GGCC	3 cut(s)	538, 591, 1141
ApeKI	GCWGC	2 cut(s)	306, 1009
ApoI	RAATTY	2 cut(s)	106, 509
ArsI	GACNNNNNNTTYG	2 cut(s)	719, 751
Asp700I	GAANNNNTTC	1 cut(s)	868
AspS9I	GGNCC	2 cut(s)	1116, 1141
AsuHPI	GGTGA	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	1116
BalI	TGGCCA	2 cut(s)	540, 593
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	485
BbvCI	CCTCAGC	1 cut(s)	975
BbvI	GCAGC	2 cut(s)	293, 1021
BccI	CCATC	1 cut(s)	1089
BceAI	ACGGC	1 cut(s)	1010
BciT130I	CCWGG	2 cut(s)	537, 822
BclI	TGATCA	1 cut(s)	988
BcoDI	GTCTC	2 cut(s)	180, 491
BfmI	CTRYAG	3 cut(s)	850, 873, 1007
BisI	GCNGC	3 cut(s)	307, 754, 1010
BlsI	GCNGC	3 cut(s)	308, 755, 1011
Bme1390I	CCNGG	2 cut(s)	537, 822
Bme18I	GGWCC	1 cut(s)	1116
BmgT120I	GGNCC	2 cut(s)	1116, 1141
BmiI	GGNNCC	1 cut(s)	1142
BmrFI	CCNGG	2 cut(s)	537, 822
BmsI	GCATC	3 cut(s)	930, 940, 1033
Bpu10I	CCTNAGC	1 cut(s)	975
BpuEI	CTTGAG	1 cut(s)	551
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	4 cut(s)	312, 342, 816, 846
Bse1I	ACTGG	3 cut(s)	74, 424, 594
Bse3DI	GCAATG	2 cut(s)	969, 1149
BseAI	TCCGGA	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	537, 822
BseGI	GGATG	5 cut(s)	17, 126, 955, 1048, 1100
BseMI	GCAATG	2 cut(s)	969, 1149
BseMII	CTCAG	2 cut(s)	966, 1137
BseNI	ACTGG	3 cut(s)	74, 424, 594
BseXI	GCAGC	2 cut(s)	293, 1021
Bsh1236I	CGCG	1 cut(s)	756
BshFI	GGCC	3 cut(s)	540, 593, 1143
BsiHKAI	GWGCWC	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	183
BsmAI	GTCTC	2 cut(s)	180, 491
BsmI	GAATGC	3 cut(s)	260, 1027, 1046
BsnI	GGCC	3 cut(s)	540, 593, 1143
Bsp1286I	GDGCHC	2 cut(s)	228, 485
Bsp13I	TCCGGA	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	797, 979, 988
BspACI	CCGC	3 cut(s)	196, 754, 1012
BspANI	GGCC	3 cut(s)	540, 593, 1143
BspCNI	CTCAG	2 cut(s)	967, 1136
BspEI	TCCGGA	1 cut(s)	182
BspFNI	CGCG	1 cut(s)	756
BspLI	GGNNCC	1 cut(s)	1142
BspMAI	CTGCAG	2 cut(s)	877, 1011
BspPI	GGATC	2 cut(s)	792, 987
BsrDI	GCAATG	2 cut(s)	969, 1149
BsrI	ACTGG	3 cut(s)	74, 424, 594
BssMI	GATC	3 cut(s)	797, 979, 988
Bst2UI	CCWGG	2 cut(s)	537, 822
Bst4CI	ACNGT	1 cut(s)	851
Bst6I	CTCTTC	2 cut(s)	1062, 1151
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstC8I	GCNNGC	1 cut(s)	786
BstDEI	CTNAG	5 cut(s)	192, 412, 504, 975, 1123
BstF5I	GGATG	5 cut(s)	17, 126, 955, 1048, 1100
BstFNI	CGCG	1 cut(s)	756
BstKTI	GATC	3 cut(s)	800, 982, 991
BstMAI	GTCTC	2 cut(s)	180, 491
BstMBI	GATC	3 cut(s)	797, 979, 988
BstMWI	GCNNNNNNNGC	2 cut(s)	489, 881
BstNI	CCWGG	2 cut(s)	537, 822
BstSCI	CCNGG	2 cut(s)	535, 820
BstSFI	CTRYAG	3 cut(s)	850, 873, 1007
BstUI	CGCG	1 cut(s)	756
BstV1I	GCAGC	2 cut(s)	293, 1021
BsuRI	GGCC	3 cut(s)	540, 593, 1143
BtsCI	GGATG	5 cut(s)	17, 126, 955, 1048, 1100
BtsIMutI	CAGTG	2 cut(s)	54, 840
Cac8I	GCNNGC	1 cut(s)	786
Cfr13I	GGNCC	2 cut(s)	1116, 1141
Csp6I	GTAC	3 cut(s)	597, 889, 984
CviAII	CATG	3 cut(s)	589, 640, 917
CviQI	GTAC	3 cut(s)	597, 889, 984
DdeI	CTNAG	5 cut(s)	192, 412, 504, 975, 1123
DpnI	GATC	3 cut(s)	799, 981, 990
DpnII	GATC	3 cut(s)	797, 979, 988
DraI	TTTAAA	1 cut(s)	250
EaeI	YGGCCR	2 cut(s)	538, 591
Eam1104I	CTCTTC	2 cut(s)	1062, 1151
EarI	CTCTTC	2 cut(s)	1062, 1151
Eco24I	GRGCYC	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	1116
Eco57I	CTGAAG	3 cut(s)	50, 60, 1086
EcoO109I	RGGNCCY	1 cut(s)	1141
EcoRII	CCWGG	2 cut(s)	535, 820
EcoRV	GATATC	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	1048
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	3 cut(s)	592, 643, 920
FatI	CATG	3 cut(s)	588, 639, 916
FauI	CCCGC	1 cut(s)	1005
FauNDI	CATATG	2 cut(s)	261, 931
FbaI	TGATCA	1 cut(s)	988
Fnu4HI	GCNGC	3 cut(s)	307, 754, 1010
FokI	GGATG	5 cut(s)	4, 133, 962, 1055, 1107
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	3 cut(s)	307, 754, 1010
GluI	GCNGC	3 cut(s)	307, 754, 1010
HaeIII	GGCC	3 cut(s)	540, 593, 1143
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	3 cut(s)	592, 643, 920
HinfI	GANTC	5 cut(s)	44, 164, 188, 272, 343
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	8 cut(s)	40, 91, 161, 333, 354, 797, 939, 1066
Hpy188III	TCNNGA	5 cut(s)	183, 725, 776, 1114, 1125
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	5 cut(s)	130, 367, 879, 1027, 1093
HpyCH4III	ACNGT	1 cut(s)	851
HpyCH4V	TGCA	6 cut(s)	309, 708, 788, 875, 1009, 1046
HpyF10VI	GCNNNNNNNGC	2 cut(s)	489, 881
HpyF3I	CTNAG	5 cut(s)	192, 412, 504, 975, 1123
Hsp92II	CATG	3 cut(s)	592, 643, 920
Kpn2I	TCCGGA	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	988
Kzo9I	GATC	3 cut(s)	797, 979, 988
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	2 cut(s)	293, 1021
LweI	GCATC	3 cut(s)	930, 940, 1033
MaeIII	GTNAC	2 cut(s)	13, 578
MalI	GATC	3 cut(s)	799, 981, 990
MboI	GATC	3 cut(s)	797, 979, 988
MboII	GAAGA	5 cut(s)	43, 53, 148, 1079, 1138
MhlI	GDGCHC	2 cut(s)	228, 485
MlsI	TGGCCA	2 cut(s)	540, 593
MluCI	AATT	4 cut(s)	106, 509, 567, 1016
MluNI	TGGCCA	2 cut(s)	540, 593
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	504
Mox20I	TGGCCA	2 cut(s)	540, 593
Mph1103I	ATGCAT	1 cut(s)	1048
MroI	TCCGGA	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	868
MscI	TGGCCA	2 cut(s)	540, 593
MseI	TTAA	3 cut(s)	249, 446, 999
MslI	CAYNNNNRTG	1 cut(s)	264
Msp20I	TGGCCA	2 cut(s)	540, 593
MspA1I	CMGCKG	1 cut(s)	1012
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	2 cut(s)	537, 822
Mva1269I	GAATGC	3 cut(s)	260, 1027, 1046
MvaI	CCWGG	2 cut(s)	537, 822
MvnI	CGCG	1 cut(s)	756
MwoI	GCNNNNNNNGC	2 cut(s)	489, 881
NdeI	CATATG	2 cut(s)	261, 931
NdeII	GATC	3 cut(s)	797, 979, 988
NlaIII	CATG	3 cut(s)	592, 643, 920
NlaIV	GGNNCC	1 cut(s)	1142
NmeAIII	GCCGAG	1 cut(s)	910
NmuCI	GTSAC	2 cut(s)	13, 578
NsiI	ATGCAT	1 cut(s)	1048
PctI	GAATGC	3 cut(s)	260, 1027, 1046
PdmI	GAANNNNTTC	1 cut(s)	868
PfeI	GAWTC	4 cut(s)	44, 164, 272, 343
PkrI	GCNGC	3 cut(s)	308, 755, 1011
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	535, 820
PspGI	CCWGG	2 cut(s)	535, 820
PspN4I	GGNNCC	1 cut(s)	1142
PspPI	GGNCC	2 cut(s)	1116, 1141
PstI	CTGCAG	2 cut(s)	877, 1011
RsaI	GTAC	3 cut(s)	598, 890, 985
RsaNI	GTAC	3 cut(s)	597, 889, 984
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	3 cut(s)	249, 446, 999
SatI	GCNGC	3 cut(s)	307, 754, 1010
Sau3AI	GATC	3 cut(s)	797, 979, 988
Sau96I	GGNCC	2 cut(s)	1116, 1141
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	537, 822
SduI	GDGCHC	2 cut(s)	228, 485
SfaNI	GCATC	3 cut(s)	930, 940, 1033
SfcI	CTRYAG	3 cut(s)	850, 873, 1007
SinI	GGWCC	1 cut(s)	1116
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	4 cut(s)	106, 509, 567, 1016
SsiI	CCGC	3 cut(s)	196, 754, 1012
StyD4I	CCNGG	2 cut(s)	535, 820
TaaI	ACNGT	1 cut(s)	851
TasI	AATT	4 cut(s)	106, 509, 567, 1016
TatI	WGTACW	1 cut(s)	888
TauI	GCSGC	1 cut(s)	756
TfiI	GAWTC	4 cut(s)	44, 164, 272, 343
Tru1I	TTAA	3 cut(s)	249, 446, 999
Tru9I	TTAA	3 cut(s)	249, 446, 999
TscAI	CASTG	2 cut(s)	54, 847
TseFI	GTSAC	2 cut(s)	13, 578
TseI	GCWGC	2 cut(s)	306, 1009
Tsp45I	GTSAC	2 cut(s)	13, 578
TspDTI	ATGAA	5 cut(s)	140, 285, 985, 1039, 1138
TspGWI	ACGGA	1 cut(s)	962
TspRI	CASTG	2 cut(s)	54, 847
VpaK11BI	GGWCC	1 cut(s)	1116
XapI	RAATTY	2 cut(s)	106, 509
XmnI	GAANNNNTTC	1 cut(s)	868
Zsp2I	ATGCAT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.