Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004941

Physical Location & Seq

Genomic Coordinates Reverse (-)

67662219 .. 67666136

Gene Structure 3918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005444

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCTTCCGCTAACGGAAATGGTGGCGCTAATGGAAATGGACAAGAGCGTGAGATACAGAAGAGTTACTGGGAGGAGAACTCGATCGATTTGACGGTTGAGGCAATGATGCTGGATTCCAAAGCCTCCGATCTTGACAAAGAAGAGCGACCTGAGGTGCTTTCCATGCTCCCACTGTATGAGGGTAAATCGGTTTTGGAACTGGGAGCTGGGATTGGTCGTTTCACCGGCGAATTAGCACAAAAGGCTGGTCAGCTTATTGCAATGGACTTCATTGACAATGTGATAAAGAAGAATGAAAGCATCAATGGACACCATAAGAACGTCAAGTTCATGTGTGCTGATGTGACATCCCCCGACCTGAAGATATCTGAAGAATCAGTGGATTTGATATTCTCAAACTGGCTGCTTATGTATCTATCTGATAAGGAGGTGGAGAATTTGGCAGAAAGGATGATGAAATGGTTGAAGGTTGGTGGATATATTTTCTTCCGAGAATCTTGTTTCCACCAATCCGGAGACTCTAAGCGGAAATACAACCCAACCCATTACCGAGAGCCCCGATTTTACAGCAAGGTGTTTAAAGAATGCCATATGTGTGATGAATCTGGGAATAACTTTGAACTCTCTCTTGTTAGCTGCAAATGTATTGGAGCTTATGTTCGGAACAAAAAGAATCAAAATCAGATTTGCTGGATATGGCAGAAGGTTGCTTCACAGAATGATAGAAAGTTCCAGCAGTTCTTAGATAATGTCCAGTATAAGAGTAATGGCATATTAAGATATGAGCGTGTCTTTGGACGGGGATTTGTGAGCACAGGAGGCATTGAGACAACTAAGGAATTTGTGGCAAAGTTGGAACTTGAGCCTGGCCAGAAAGTTTTAGATGTTGGCTGTGGAATTGGGGGAGGTGACTTTTACATGGCCAGTACCTTTGATGTTGAGGTTGTTGGCATTGACCTCTCTGTAAACATGATTTCCTTTGCCCTTGAACAATCCATTGGACTGAAATGCGCTGTTGAGTTTGAAGTTGCGGATTGCACCACAAAAACATATCCAGACAACACCTTTGATGTGATATACAGCCGCGATACCATTTTACACATTCAAGACAAGCCTGCATTATTCCGATCCTTTTACAAGTGGTTGAAGCCAGGAGGTAAAGTTCTCATCACTGACTACTGTAGGAGTGCTGGAACTCCTTCTGCAGATTTTGCCGAGTACATAAAGCAAAGAGGATATGACCTCCATGATGTAAAAGCATATGGTCAGGGAAAATTTGCAATTTTCTGTCTATTTTCCAGACACAGCTTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009308 GO:0009309 GO:0009555 GO:0009605 GO:0009653 GO:0009791 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010183 GO:0016043 GO:0016049 GO:0016740 GO:0016741 GO:0019637 GO:0019695 GO:0022414 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0040007 GO:0040011 GO:0042133 GO:0042136 GO:0042221 GO:0042330 GO:0042401 GO:0042425 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048229 GO:0048364 GO:0048468 GO:0048528 GO:0048588 GO:0048589 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050918 GO:0051704 GO:0052667 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090407 GO:0090696 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 Methyltransf_31

Protein Analysis

440

Amino Acids

49.74

Weight (kDa)

5.87

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	53 - 188	5.5e-07	Methyltransferase domain
TehB	PF03848	53 - 162	1.4e-06	Tellurite resistance protein TehB
Methyltransf_31	PF13847	61 - 177	9.6e-11	Methyltransferase domain
Methyltransf_PK	PF05891	62 - 199	5.7e-09	AdoMet dependent proline di-methyltransferase
Methyltransf_25	PF13649	65 - 160	8.8e-14	Methyltransferase domain
Methyltransf_11	PF08241	66 - 164	1.5e-13	Methyltransferase domain
Methyltransf_12	PF08242	66 - 162	1.8e-08	Methyltransferase domain
Ubie_methyltran	PF01209	280 - 397	1.1e-09	ubiE/COQ5 methyltransferase family
CMAS	PF02353	280 - 392	4.3e-13	Mycolic acid cyclopropane synthetase
Methyltransf_23	PF13489	282 - 409	2.3e-18	Methyltransferase domain
Methyltransf_31	PF13847	289 - 396	1.4e-20	Methyltransferase domain
Methyltransf_25	PF13649	294 - 387	1.4e-18	Methyltransferase domain
Methyltransf_11	PF08241	295 - 391	3.4e-19	Methyltransferase domain
Methyltransf_12	PF08242	295 - 388	2.7e-13	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48600 AT1G73600 AT1G73600 AT3G18000
fragaria_vesca	FvH4_5g17300 FvH4_5g17300 FvH4_5g17300 FvH4_5g17300
malus_domestica	MD06G1226700.v1.1 MD14G1236000.v1.1
prunus_persica	Prupe.5G233000_v2.0.a1 Prupe.5G233000_v2.0.a1
pyrus_communis	pycom06g20300 pycom14g19710
rosa_chinensis	RchiOBHm_Chr3g0488691 RchiOBHm_Chr7g0178471
rosa_laevigata	RLG00000005444
rosa_multiflora	Rmu_sc0001208.1_g000086 Rmu_sc0010235.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274870 Rroxscaffold_6G00393940
rosa_rugosa	Rorug03G0240800 Rorug06G0417300 Rorug06G0417400
rosa_samantha	Rh3BG325800 Rh3CG323300 Rh7BG015500 Rh7CG016200
rosa_wichuraiana	Rw0G013680 Rw7G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1089
AccIII	TCCGGA	1 cut(s)	515
AciI	CCGC	4 cut(s)	9, 529, 1034, 1087
AclWI	GGATC	1 cut(s)	1125
AcoI	YGGCCR	2 cut(s)	871, 924
AcsI	RAATTY	3 cut(s)	439, 842, 1277
AcuI	CTGAAG	2 cut(s)	383, 393
AfaI	GTAC	2 cut(s)	931, 1223
AgsI	TTSAA	6 cut(s)	469, 623, 992, 1028, 1109, 1150
AjnI	CCWGG	2 cut(s)	868, 1153
AjuI	GAANNNNNNNTTGG	2 cut(s)	984, 1016
AloI	GAACNNNNNNTCC	4 cut(s)	645, 677, 1149, 1181
AluBI	AGCT	5 cut(s)	209, 256, 639, 656, 1311
AluI	AGCT	5 cut(s)	209, 256, 639, 656, 1311
Alw21I	GWGCWC	1 cut(s)	818
Alw26I	GTCTC	2 cut(s)	513, 824
AlwI	GGATC	1 cut(s)	1125
Aor13HI	TCCGGA	1 cut(s)	515
AoxI	GGCC	2 cut(s)	871, 924
ApeKI	GCWGC	2 cut(s)	406, 639
ApoI	RAATTY	3 cut(s)	439, 842, 1277
ArsI	GACNNNNNNTTYG	5 cut(s)	235, 267, 1052, 1084, 1296
Asp700I	GAANNNNTTC	1 cut(s)	1201
AspLEI	GCGC	2 cut(s)	29, 1016
AsuHPI	GGTGA	2 cut(s)	217, 923
AxyI	CCTNAGG	1 cut(s)	153
BalI	TGGCCA	2 cut(s)	873, 926
BanII	GRGCYC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	818
BbvI	GCAGC	2 cut(s)	393, 626
BciT130I	CCWGG	2 cut(s)	870, 1155
BcoDI	GTCTC	2 cut(s)	513, 824
BfmI	CTRYAG	2 cut(s)	1183, 1206
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	3 cut(s)	407, 640, 1087
BlsI	GCNGC	3 cut(s)	408, 641, 1088
Bme1390I	CCNGG	2 cut(s)	870, 1155
BmrFI	CCNGG	2 cut(s)	870, 1155
BmrI	ACTGGG	2 cut(s)	79, 212
BmsI	GCATC	2 cut(s)	99, 312
BmuI	ACTGGG	2 cut(s)	79, 212
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpuEI	CTTGAG	1 cut(s)	884
Bsa29I	ATCGAT	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	4 cut(s)	645, 675, 1149, 1179
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	5 cut(s)	74, 207, 407, 757, 927
Bse21I	CCTNAGG	1 cut(s)	153
Bse3DI	GCAATG	2 cut(s)	111, 270
BseAI	TCCGGA	1 cut(s)	515
BseBI	CCWGG	2 cut(s)	870, 1155
BseCI	ATCGAT	1 cut(s)	87
BseGI	GGATG	2 cut(s)	350, 459
BseMI	GCAATG	2 cut(s)	111, 270
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	5 cut(s)	74, 207, 407, 757, 927
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	393, 626
BseYI	CCCAGC	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	1089
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	873, 926
BshVI	ATCGAT	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	818
BsiSI	CCGG	2 cut(s)	228, 516
BsmAI	GTCTC	2 cut(s)	513, 824
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	873, 926
Bsp1286I	GDGCHC	2 cut(s)	561, 818
Bsp13I	TCCGGA	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	84, 130, 1130
BspACI	CCGC	4 cut(s)	9, 529, 1034, 1087
BspANI	GGCC	2 cut(s)	873, 926
BspCNI	CTCAG	1 cut(s)	145
BspDI	ATCGAT	1 cut(s)	87
BspEI	TCCGGA	1 cut(s)	515
BspFNI	CGCG	1 cut(s)	1089
BspMAI	CTGCAG	1 cut(s)	1210
BspPI	GGATC	1 cut(s)	1125
BspQI	GCTCTTC	1 cut(s)	138
BsrDI	GCAATG	2 cut(s)	111, 270
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	5 cut(s)	74, 207, 407, 757, 927
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	3 cut(s)	84, 130, 1130
Bst2UI	CCWGG	2 cut(s)	870, 1155
Bst4CI	ACNGT	3 cut(s)	97, 177, 1184
Bst6I	CTCTTC	2 cut(s)	56, 138
BstAPI	GCANNNNNTGC	1 cut(s)	1214
BstC8I	GCNNGC	1 cut(s)	1119
BstDEI	CTNAG	4 cut(s)	153, 525, 745, 837
BstF5I	GGATG	2 cut(s)	350, 459
BstFNI	CGCG	1 cut(s)	1089
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	2 cut(s)	29, 1016
BstKTI	GATC	3 cut(s)	87, 133, 1133
BstMAI	GTCTC	2 cut(s)	513, 824
BstMBI	GATC	3 cut(s)	84, 130, 1130
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 245, 822, 1214
BstNI	CCWGG	2 cut(s)	870, 1155
BstSCI	CCNGG	2 cut(s)	868, 1153
BstSFI	CTRYAG	2 cut(s)	1183, 1206
BstUI	CGCG	1 cut(s)	1089
BstV1I	GCAGC	2 cut(s)	393, 626
Bsu15I	ATCGAT	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	873, 926
BsuTUI	ATCGAT	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	350, 459
BtsIMutI	CAGTG	3 cut(s)	173, 387, 1173
Cac8I	GCNNGC	1 cut(s)	1119
CfoI	GCGC	2 cut(s)	29, 1016
Cfr10I	RCCGGY	1 cut(s)	227
ClaI	ATCGAT	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	930, 1222
CviAII	CATG	5 cut(s)	166, 334, 922, 973, 1250
CviQI	GTAC	2 cut(s)	930, 1222
DdeI	CTNAG	4 cut(s)	153, 525, 745, 837
DpnI	GATC	3 cut(s)	86, 132, 1132
DpnII	GATC	3 cut(s)	84, 130, 1130
DraI	TTTAAA	1 cut(s)	583
EaeI	YGGCCR	2 cut(s)	871, 924
Eam1104I	CTCTTC	2 cut(s)	56, 138
EarI	CTCTTC	2 cut(s)	56, 138
Eco24I	GRGCYC	1 cut(s)	561
Eco32I	GATATC	1 cut(s)	369
Eco57I	CTGAAG	2 cut(s)	383, 393
Eco81I	CCTNAGG	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	868, 1153
EcoRV	GATATC	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	561
FaeI	CATG	5 cut(s)	169, 337, 925, 976, 1253
FatI	CATG	5 cut(s)	165, 333, 921, 972, 1249
FauNDI	CATATG	2 cut(s)	594, 1264
Fnu4HI	GCNGC	3 cut(s)	407, 640, 1087
FokI	GGATG	2 cut(s)	337, 466
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	3 cut(s)	407, 640, 1087
GlaI	GCGC	2 cut(s)	28, 1015
GluI	GCNGC	3 cut(s)	407, 640, 1087
GsaI	CCCAGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	873, 926
HapII	CCGG	2 cut(s)	228, 516
HhaI	GCGC	2 cut(s)	29, 1016
Hin1II	CATG	5 cut(s)	169, 337, 925, 976, 1253
Hin6I	GCGC	2 cut(s)	27, 1014
HinP1I	GCGC	2 cut(s)	27, 1014
HinfI	GANTC	6 cut(s)	116, 377, 497, 521, 605, 676
HpaII	CCGG	2 cut(s)	228, 516
HphI	GGTGA	2 cut(s)	217, 923
Hpy166II	GTNNAC	1 cut(s)	970
Hpy188I	TCNGA	7 cut(s)	130, 373, 424, 494, 666, 687, 1130
Hpy188III	TCNNGA	5 cut(s)	134, 516, 1058, 1109, 1302
Hpy8I	GTNNAC	1 cut(s)	970
HpyAV	CCTTC	3 cut(s)	463, 700, 1212
HpyCH4III	ACNGT	3 cut(s)	97, 177, 1184
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	6 cut(s)	263, 642, 1041, 1121, 1208, 1283
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 245, 822, 1214
HpyF3I	CTNAG	4 cut(s)	153, 525, 745, 837
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	5 cut(s)	169, 337, 925, 976, 1253
HspAI	GCGC	2 cut(s)	27, 1014
Kpn2I	TCCGGA	1 cut(s)	515
Kzo9I	GATC	3 cut(s)	84, 130, 1130
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	3 cut(s)	174, 206, 653
Lsp1109I	GCAGC	2 cut(s)	393, 626
LweI	GCATC	2 cut(s)	99, 312
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	3 cut(s)	65, 346, 911
MalI	GATC	3 cut(s)	86, 132, 1132
MboI	GATC	3 cut(s)	84, 130, 1130
MboII	GAAGA	6 cut(s)	73, 155, 304, 376, 386, 481
MhlI	GDGCHC	2 cut(s)	561, 818
MlsI	TGGCCA	2 cut(s)	873, 926
MluCI	AATT	6 cut(s)	233, 439, 842, 900, 1277, 1284
MluNI	TGGCCA	2 cut(s)	873, 926
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	837
Mox20I	TGGCCA	2 cut(s)	873, 926
MroI	TCCGGA	1 cut(s)	515
MroXI	GAANNNNTTC	1 cut(s)	1201
MscI	TGGCCA	2 cut(s)	873, 926
MseI	TTAA	2 cut(s)	582, 779
MslI	CAYNNNNRTG	1 cut(s)	597
Msp20I	TGGCCA	2 cut(s)	873, 926
MspI	CCGG	2 cut(s)	228, 516
MspR9I	CCNGG	2 cut(s)	870, 1155
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	2 cut(s)	870, 1155
MvnI	CGCG	1 cut(s)	1089
MwoI	GCNNNNNNNGC	4 cut(s)	166, 245, 822, 1214
NdeI	CATATG	2 cut(s)	594, 1264
NdeII	GATC	3 cut(s)	84, 130, 1130
NlaIII	CATG	5 cut(s)	169, 337, 925, 976, 1253
NmeAIII	GCCGAG	1 cut(s)	1243
NmuCI	GTSAC	2 cut(s)	346, 911
PciSI	GCTCTTC	1 cut(s)	138
PctI	GAATGC	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	1201
PfeI	GAWTC	5 cut(s)	116, 377, 497, 605, 676
PkrI	GCNGC	3 cut(s)	408, 641, 1088
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	868, 1153
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	2 cut(s)	868, 1153
PstI	CTGCAG	1 cut(s)	1210
PvuI	CGATCG	1 cut(s)	87
RsaI	GTAC	2 cut(s)	931, 1223
RsaNI	GTAC	2 cut(s)	930, 1222
RseI	CAYNNNNRTG	1 cut(s)	597
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	582, 779
SatI	GCNGC	3 cut(s)	407, 640, 1087
Sau3AI	GATC	3 cut(s)	84, 130, 1130
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	870, 1155
SduI	GDGCHC	2 cut(s)	561, 818
SfaNI	GCATC	2 cut(s)	99, 312
SfcI	CTRYAG	2 cut(s)	1183, 1206
SgrAI	CRCCGGYG	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	6 cut(s)	233, 439, 842, 900, 1277, 1284
SsiI	CCGC	4 cut(s)	9, 529, 1034, 1087
StyD4I	CCNGG	2 cut(s)	868, 1153
TaaI	ACNGT	3 cut(s)	97, 177, 1184
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	2 cut(s)	83, 87
TasI	AATT	6 cut(s)	233, 439, 842, 900, 1277, 1284
TatI	WGTACW	1 cut(s)	1221
TauI	GCSGC	1 cut(s)	1089
TfiI	GAWTC	5 cut(s)	116, 377, 497, 605, 676
Tru1I	TTAA	2 cut(s)	582, 779
Tru9I	TTAA	2 cut(s)	582, 779
TscAI	CASTG	3 cut(s)	180, 387, 1180
TseFI	GTSAC	2 cut(s)	346, 911
TseI	GCWGC	2 cut(s)	406, 639
Tsp45I	GTSAC	2 cut(s)	346, 911
TspDTI	ATGAA	5 cut(s)	262, 312, 322, 473, 618
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	3 cut(s)	180, 387, 1180
XapI	RAATTY	3 cut(s)	439, 842, 1277
XmnI	GAANNNNTTC	1 cut(s)	1201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.