Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004941

Physical Location & Seq

Genomic Coordinates Forward (+)

34869546 .. 34872764

Gene Structure 3219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG323300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTATGATGCCCAGGGAATTCCTTTAGTGATATATTGGAAAGATGCATTTTCTACTTATGTTGCTTTGCCACTTCAACAAGCTTTACTGTCAGTAATACAAAGCCGTGACACCATTCTGCACATTCAAGACAAGCCTGCATTGTTCCGATCCTTTTACAAGTGGTTGAAGCCAGGAGGCAAAGTTCTCATCAATGATTACTGTAGGAGTGCTGGCACTCCGTCGGTTGAGTTTTCTGAGTACATTATGCAAAGAGGATATGAACTCCATGATGTAAAAGCATGTGGTCAGATGCTCAAGGATGCTGGTTTTGATGAGGTCATTGCTGAGAATAGTACTGAACAGCGGGTTACCTCAACTCAGTGCATGGCTGAGAGTTCAGTTCTTGATGCACCGTTATCCTCGCTTGTCATGCCTTCCATTAGCCTCACTGTTTGCAGCATATTAATAATTGGTGTACTATGGCCTGATGAATCCGGCGTTTTTTTAGGAGCCATTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009308 GO:0009309 GO:0009555 GO:0009605 GO:0009653 GO:0009791 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010183 GO:0016043 GO:0016049 GO:0016740 GO:0016741 GO:0019637 GO:0019695 GO:0022414 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0040007 GO:0040011 GO:0042133 GO:0042136 GO:0042221 GO:0042330 GO:0042401 GO:0042425 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048229 GO:0048364 GO:0048468 GO:0048528 GO:0048588 GO:0048589 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050918 GO:0051704 GO:0052667 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090407 GO:0090696 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 Methyltransf_31

Protein Analysis

167

Amino Acids

18.52

Weight (kDa)

4.79

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	31 - 105	9.9e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48600 AT1G73600 AT1G73600 AT3G18000
fragaria_vesca	FvH4_5g17300 FvH4_5g17300 FvH4_5g17300 FvH4_5g17300
malus_domestica	MD06G1226700.v1.1 MD14G1236000.v1.1
prunus_persica	Prupe.5G233000_v2.0.a1 Prupe.5G233000_v2.0.a1
pyrus_communis	pycom06g20300 pycom14g19710
rosa_chinensis	RchiOBHm_Chr3g0488691 RchiOBHm_Chr7g0178471
rosa_laevigata	RLG00000005444
rosa_multiflora	Rmu_sc0001208.1_g000086 Rmu_sc0010235.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274870 Rroxscaffold_6G00393940
rosa_rugosa	Rorug03G0240800 Rorug06G0417300 Rorug06G0417400
rosa_samantha	Rh3BG325800 Rh3CG323300 Rh7BG015500 Rh7CG016200
rosa_wichuraiana	Rw0G013680 Rw7G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	346
AclWI	GGATC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	18
AfaI	GTAC	3 cut(s)	242, 337, 459
AgsI	TTSAA	3 cut(s)	77, 128, 169
AjnI	CCWGG	2 cut(s)	12, 172
AloI	GAACNNNNNNTCC	2 cut(s)	168, 200
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
AlwI	GGATC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	1 cut(s)	438
ApoI	RAATTY	1 cut(s)	18
AseI	ATTAAT	1 cut(s)	446
BbvI	GCAGC	1 cut(s)	450
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	2 cut(s)	14, 174
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	1 cut(s)	439
BlsI	GCNGC	1 cut(s)	440
BmcAI	AGTACT	1 cut(s)	337
Bme1390I	CCNGG	2 cut(s)	14, 174
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	2 cut(s)	14, 174
BmsI	GCATC	4 cut(s)	34, 282, 292, 379
BpuEI	CTTGAG	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	12, 13
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	14, 174
BseDI	CCNNGG	2 cut(s)	12, 13
BseGI	GGATG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	4 cut(s)	228, 318, 363, 374
BseXI	GCAGC	1 cut(s)	450
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	477
BsnI	GGCC	1 cut(s)	466
Bsp143I	GATC	1 cut(s)	149
BspACI	CCGC	1 cut(s)	346
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	4 cut(s)	229, 319, 364, 373
BspLI	GGNNCC	1 cut(s)	493
BspPI	GGATC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	12, 13
BssMI	GATC	1 cut(s)	149
Bst2UI	CCWGG	2 cut(s)	14, 174
Bst4CI	ACNGT	4 cut(s)	90, 203, 396, 433
BstC8I	GCNNGC	2 cut(s)	138, 214
BstDEI	CTNAG	4 cut(s)	237, 327, 360, 372
BstEII	GGTNACC	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	2 cut(s)	14, 174
BstNSI	RCATGY	1 cut(s)	285
BstPI	GGTNACC	1 cut(s)	349
BstSCI	CCNGG	2 cut(s)	12, 172
BstSFI	CTRYAG	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	466
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	368, 429
Cac8I	GCNNGC	2 cut(s)	138, 214
Csp6I	GTAC	3 cut(s)	241, 336, 458
CviAII	CATG	4 cut(s)	269, 282, 367, 412
CviJI	RGCY	8 cut(s)	83, 105, 136, 172, 371, 426, 466, 494
CviKI_1	RGCY	8 cut(s)	83, 105, 136, 172, 371, 426, 466, 494
CviQI	GTAC	3 cut(s)	241, 336, 458
DdeI	CTNAG	4 cut(s)	237, 327, 360, 372
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
Eco91I	GGTNACC	1 cut(s)	349
EcoO65I	GGTNACC	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	12, 172
EcoT22I	ATGCAT	1 cut(s)	49
FaeI	CATG	4 cut(s)	272, 285, 370, 415
FatI	CATG	4 cut(s)	268, 281, 366, 411
FauI	CCCGC	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	439
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	439
GluI	GCNGC	1 cut(s)	439
HaeIII	GGCC	1 cut(s)	466
HapII	CCGG	1 cut(s)	477
Hin1II	CATG	4 cut(s)	272, 285, 370, 415
HindIII	AAGCTT	1 cut(s)	81
HinfI	GANTC	1 cut(s)	473
HpaII	CCGG	1 cut(s)	477
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	3 cut(s)	149, 238, 291
Hpy188III	TCNNGA	2 cut(s)	128, 386
Hpy8I	GTNNAC	1 cut(s)	458
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	426
HpyCH4III	ACNGT	4 cut(s)	90, 203, 396, 433
HpyCH4V	TGCA	7 cut(s)	47, 121, 140, 250, 366, 392, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	4 cut(s)	237, 327, 360, 372
Hsp92II	CATG	4 cut(s)	272, 285, 370, 415
Kzo9I	GATC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	491
LpnPI	CCDG	8 cut(s)	26, 150, 159, 186, 198, 291, 480, 490
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	4 cut(s)	34, 282, 292, 379
MaeIII	GTNAC	2 cut(s)	107, 349
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MluCI	AATT	2 cut(s)	18, 450
MnlI	CCTC	6 cut(s)	170, 248, 310, 364, 412, 437
Mph1103I	ATGCAT	1 cut(s)	49
MseI	TTAA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	2 cut(s)	14, 174
MvaI	CCWGG	2 cut(s)	14, 174
MwoI	GCNNNNNNNGC	1 cut(s)	412
NdeII	GATC	1 cut(s)	149
NlaIII	CATG	4 cut(s)	272, 285, 370, 415
NlaIV	GGNNCC	1 cut(s)	493
NmuCI	GTSAC	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	49
NspI	RCATGY	1 cut(s)	285
PasI	CCCWGGG	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	440
PshBI	ATTAAT	1 cut(s)	446
Psp6I	CCWGG	2 cut(s)	12, 172
PspEI	GGTNACC	1 cut(s)	349
PspGI	CCWGG	2 cut(s)	12, 172
PspN4I	GGNNCC	1 cut(s)	493
RsaI	GTAC	3 cut(s)	242, 337, 459
RsaNI	GTAC	3 cut(s)	241, 336, 458
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	1 cut(s)	439
Sau3AI	GATC	1 cut(s)	149
ScaI	AGTACT	1 cut(s)	337
ScrFI	CCNGG	2 cut(s)	14, 174
SetI	ASST	3 cut(s)	85, 321, 356
SfaNI	GCATC	4 cut(s)	34, 282, 292, 379
SfcI	CTRYAG	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	2 cut(s)	18, 450
SsiI	CCGC	1 cut(s)	346
StyD4I	CCNGG	2 cut(s)	12, 172
TaaI	ACNGT	4 cut(s)	90, 203, 396, 433
TasI	AATT	2 cut(s)	18, 450
TatI	WGTACW	3 cut(s)	240, 335, 457
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	2 cut(s)	368, 436
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	438
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	276, 486
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	2 cut(s)	368, 436
VspI	ATTAAT	1 cut(s)	446
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	1 cut(s)	285
ZrmI	AGTACT	1 cut(s)	337
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.