Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004941

Physical Location & Seq

Genomic Coordinates Reverse (-)

14284798 .. 14286104

Gene Structure 1307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATATACAGCCGTGACACCATTCTGCACATTCAAGACAAGCCTGCATTGTTCCGATCCTTTTACAAGTGGTTGAAGCCAGGAGGCAAAGTTCTCATCAATGATTACTGTAGGAGTGCTGGCACTCCGTCGGTTGAGTTTTCTGAGTACATTATGCAAAGAGGATATGAACTCCATGATGTAAAAGCATGTGGTCAGATGCTCAAGGATGCTGGTTTTGATGAGGTCATTGCTGAGAATCGTACTGAACAGCGGGTTACCTCAACTCAGTGCATGGCTGAGAGTTCAGTTCTTGATGCACCGTTATCCTCACTTGTCATGCCTTCCATTAGCCTCACTGTTTGCAGCATATTAATAATTGGTGTACTATGGCCTGAACTAAGTCCCATTTTGGCTTTTAACTATAGGGTTGGCGTTAGAGCTTGCTGTGGAGTACAAAGGAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009308 GO:0009309 GO:0009555 GO:0009605 GO:0009653 GO:0009791 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010183 GO:0016043 GO:0016049 GO:0016740 GO:0016741 GO:0019637 GO:0019695 GO:0022414 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0040007 GO:0040011 GO:0042133 GO:0042136 GO:0042221 GO:0042330 GO:0042401 GO:0042425 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048229 GO:0048364 GO:0048468 GO:0048528 GO:0048588 GO:0048589 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050918 GO:0051704 GO:0052667 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090407 GO:0090696 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 Methyltransf_31

Protein Analysis

149

Amino Acids

16.66

Weight (kDa)

7.58

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	2 - 74	1.3e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48600 AT1G73600 AT1G73600 AT3G18000
fragaria_vesca	FvH4_5g17300 FvH4_5g17300 FvH4_5g17300 FvH4_5g17300
malus_domestica	MD06G1226700.v1.1 MD14G1236000.v1.1
prunus_persica	Prupe.5G233000_v2.0.a1 Prupe.5G233000_v2.0.a1
pyrus_communis	pycom06g20300 pycom14g19710
rosa_chinensis	RchiOBHm_Chr3g0488691 RchiOBHm_Chr7g0178471
rosa_laevigata	RLG00000005444
rosa_multiflora	Rmu_sc0001208.1_g000086 Rmu_sc0010235.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274870 Rroxscaffold_6G00393940
rosa_rugosa	Rorug03G0240800 Rorug06G0417300 Rorug06G0417400
rosa_samantha	Rh3BG325800 Rh3CG323300 Rh7BG015500 Rh7CG016200
rosa_wichuraiana	Rw0G013680 Rw7G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	1 cut(s)	51
AfaI	GTAC	4 cut(s)	149, 244, 366, 435
AgsI	TTSAA	2 cut(s)	35, 76
AjnI	CCWGG	1 cut(s)	79
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
AlwI	GGATC	1 cut(s)	51
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	345
AseI	ATTAAT	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	357
BciT130I	CCWGG	1 cut(s)	81
BfmI	CTRYAG	2 cut(s)	109, 403
BisI	GCNGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	3 cut(s)	189, 199, 286
BpuEI	CTTGAG	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	4 cut(s)	135, 225, 270, 281
BseXI	GCAGC	1 cut(s)	357
BsgI	GTGCAG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	373
Bsp143I	GATC	1 cut(s)	56
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	4 cut(s)	136, 226, 271, 280
BspPI	GGATC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	228
BssMI	GATC	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	3 cut(s)	110, 303, 340
BstC8I	GCNNGC	3 cut(s)	45, 121, 424
BstDEI	CTNAG	5 cut(s)	144, 234, 267, 279, 380
BstEII	GGTNACC	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	192
BstPI	GGTNACC	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	2 cut(s)	109, 403
BstV1I	GCAGC	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	275, 336
Cac8I	GCNNGC	3 cut(s)	45, 121, 424
Csp6I	GTAC	4 cut(s)	148, 243, 365, 434
CviAII	CATG	5 cut(s)	176, 189, 274, 319, 447
CviJI	RGCY	8 cut(s)	12, 43, 79, 278, 333, 373, 395, 422
CviKI_1	RGCY	8 cut(s)	12, 43, 79, 278, 333, 373, 395, 422
CviQI	GTAC	4 cut(s)	148, 243, 365, 434
DdeI	CTNAG	5 cut(s)	144, 234, 267, 279, 380
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
Eco91I	GGTNACC	1 cut(s)	256
EcoO65I	GGTNACC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	79
FaeI	CATG	5 cut(s)	179, 192, 277, 322, 450
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	5 cut(s)	175, 188, 273, 318, 446
FauI	CCCGC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	346
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	346
GluI	GCNGC	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	373
Hin1II	CATG	5 cut(s)	179, 192, 277, 322, 450
HinfI	GANTC	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	3 cut(s)	56, 145, 198
Hpy188III	TCNNGA	2 cut(s)	35, 293
Hpy8I	GTNNAC	1 cut(s)	365
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	3 cut(s)	110, 303, 340
HpyCH4V	TGCA	6 cut(s)	28, 47, 157, 273, 299, 345
HpyF3I	CTNAG	5 cut(s)	144, 234, 267, 279, 380
Hsp92II	CATG	5 cut(s)	179, 192, 277, 322, 450
Kzo9I	GATC	1 cut(s)	56
LpnPI	CCDG	6 cut(s)	57, 66, 93, 105, 198, 387
Lsp1109I	GCAGC	1 cut(s)	357
LweI	GCATC	3 cut(s)	189, 199, 286
MaeIII	GTNAC	2 cut(s)	14, 256
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MluCI	AATT	1 cut(s)	357
MnlI	CCTC	6 cut(s)	77, 155, 217, 271, 319, 344
MseI	TTAA	2 cut(s)	353, 399
MspA1I	CMGCKG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	56
NlaIII	CATG	5 cut(s)	179, 192, 277, 322, 450
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	347
PshBI	ATTAAT	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	79
PspEI	GGTNACC	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	79
RsaI	GTAC	4 cut(s)	149, 244, 366, 435
RsaNI	GTAC	4 cut(s)	148, 243, 365, 434
SaqAI	TTAA	2 cut(s)	353, 399
SatI	GCNGC	1 cut(s)	346
Sau3AI	GATC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	3 cut(s)	228, 263, 424
SfaNI	GCATC	3 cut(s)	189, 199, 286
SfcI	CTRYAG	2 cut(s)	109, 403
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	357
SsiI	CCGC	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	3 cut(s)	110, 303, 340
TasI	AATT	1 cut(s)	357
TatI	WGTACW	3 cut(s)	147, 364, 433
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	2 cut(s)	353, 399
Tru9I	TTAA	2 cut(s)	353, 399
TscAI	CASTG	2 cut(s)	275, 343
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	1 cut(s)	345
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	2 cut(s)	275, 343
VspI	ATTAAT	1 cut(s)	353
XceI	RCATGY	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.