Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004941

Physical Location & Seq

Genomic Coordinates Reverse (-)

55669602 .. 55669953

Gene Structure 352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0417400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGCTAAGCTACTTGGTCACCACCTGGTTTATATATCATCCTCTTTCTCTCTGTCTTCCTCCTCCTTGCATCGCCTGATGGGAATGGTGGAAGCAAGAATCTGTCAAAGGCGGAGTAAAACATGGACAGGGTTATGTGTGAACACTGGCAACTGCCATCGTCAGTGTAGGAACTGGGAAGGTGCTCAGCGTGGAGCTTGTCATGCTCAATTCCCAGGGTTCGCATGCTTCTGCTACTTTAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009308 GO:0009309 GO:0009555 GO:0009605 GO:0009653 GO:0009791 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010183 GO:0016043 GO:0016049 GO:0016740 GO:0016741 GO:0019637 GO:0019695 GO:0022414 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0040007 GO:0040011 GO:0042133 GO:0042136 GO:0042221 GO:0042330 GO:0042401 GO:0042425 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048229 GO:0048364 GO:0048468 GO:0048528 GO:0048588 GO:0048589 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050918 GO:0051704 GO:0052667 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090407 GO:0090696 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 Methyltransf_31

Protein Analysis

82

Amino Acids

9.26

Weight (kDa)

9.3

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	33 - 82	4.8e-12	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48600 AT1G73600 AT1G73600 AT3G18000
fragaria_vesca	FvH4_5g17300 FvH4_5g17300 FvH4_5g17300 FvH4_5g17300
malus_domestica	MD06G1226700.v1.1 MD14G1236000.v1.1
prunus_persica	Prupe.5G233000_v2.0.a1 Prupe.5G233000_v2.0.a1
pyrus_communis	pycom06g20300 pycom14g19710
rosa_chinensis	RchiOBHm_Chr3g0488691 RchiOBHm_Chr7g0178471
rosa_laevigata	RLG00000005444
rosa_multiflora	Rmu_sc0001208.1_g000086 Rmu_sc0010235.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274870 Rroxscaffold_6G00393940
rosa_rugosa	Rorug03G0240800 Rorug06G0417300 Rorug06G0417400
rosa_samantha	Rh3BG325800 Rh3CG323300 Rh7BG015500 Rh7CG016200
rosa_wichuraiana	Rw0G013680 Rw7G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	24, 214
AluBI	AGCT	2 cut(s)	10, 197
AluI	AGCT	2 cut(s)	10, 197
Alw21I	GWGCWC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	187
BccI	CCATC	2 cut(s)	73, 165
BciT130I	CCWGG	2 cut(s)	26, 216
BlpI	GCTNAGC	2 cut(s)	6, 186
Bme1390I	CCNGG	2 cut(s)	26, 216
BmrFI	CCNGG	2 cut(s)	26, 216
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	79
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	48
Bpu1102I	GCTNAGC	2 cut(s)	6, 186
BsaJI	CCNNGG	2 cut(s)	214, 215
Bse1I	ACTGG	2 cut(s)	151, 179
BseBI	CCWGG	2 cut(s)	26, 216
BseDI	CCNNGG	2 cut(s)	214, 215
BseGI	GGATG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	151, 179
BseRI	GAGGAG	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp1720I	GCTNAGC	2 cut(s)	6, 186
BspACI	CCGC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	151, 179
BssECI	CCNNGG	2 cut(s)	214, 215
Bst2UI	CCWGG	2 cut(s)	26, 216
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	6, 186
BstEII	GGTNACC	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	2 cut(s)	26, 216
BstNSI	RCATGY	1 cut(s)	228
BstPI	GGTNACC	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	24, 214
BstV2I	GAAGAC	1 cut(s)	48
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	144, 170
Cac8I	GCNNGC	1 cut(s)	226
CsiI	ACCWGGT	1 cut(s)	24
CviAII	CATG	3 cut(s)	123, 203, 225
CviJI	RGCY	3 cut(s)	5, 10, 197
CviKI_1	RGCY	3 cut(s)	5, 10, 197
DdeI	CTNAG	2 cut(s)	6, 186
EciI	GGCGGA	1 cut(s)	127
Eco91I	GGTNACC	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	17
EcoRII	CCWGG	2 cut(s)	24, 214
FaeI	CATG	3 cut(s)	126, 206, 228
FaiI	YATR	6 cut(s)	33, 35, 124, 136, 204, 226
FatI	CATG	3 cut(s)	122, 202, 224
FokI	GGATG	1 cut(s)	25
Hin1II	CATG	3 cut(s)	126, 206, 228
HinfI	GANTC	1 cut(s)	99
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	6, 186
Hsp92II	CATG	3 cut(s)	126, 206, 228
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	8 cut(s)	11, 38, 89, 114, 132, 160, 201, 228
LweI	GCATC	1 cut(s)	79
MabI	ACCWGGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	17
MboII	GAAGA	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	2 cut(s)	209, 241
MnlI	CCTC	3 cut(s)	52, 70, 73
MseI	TTAA	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	26, 216
MvaI	CCWGG	2 cut(s)	26, 216
MwoI	GCNNNNNNNGC	1 cut(s)	203
NlaIII	CATG	3 cut(s)	126, 206, 228
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	228
PaeI	GCATGC	1 cut(s)	228
PasI	CCCWGGG	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	24, 214
PspEI	GGTNACC	1 cut(s)	17
PspGI	CCWGG	2 cut(s)	24, 214
SaqAI	TTAA	1 cut(s)	240
ScrFI	CCNGG	2 cut(s)	26, 216
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	4 cut(s)	12, 27, 184, 199
SexAI	ACCWGGT	1 cut(s)	24
SfaNI	GCATC	1 cut(s)	79
SphI	GCATGC	1 cut(s)	228
Sse9I	AATT	2 cut(s)	209, 241
SsiI	CCGC	1 cut(s)	112
StyD4I	CCNGG	2 cut(s)	24, 214
TasI	AATT	2 cut(s)	209, 241
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	151, 170
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspRI	CASTG	2 cut(s)	151, 170
XceI	RCATGY	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.