Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004941

Physical Location & Seq

Genomic Coordinates Forward (+)

33864895 .. 33866357

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG325800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGATATACAGCCGTGACACCATTCTGCACATTCAAGACAAGCCTGCATTGTTCCGATCCTTTTACAAGTGGTTGAAGCCAGGAGGCAAAGTTCTCATCAATGATTACTGTAGGAGTGCTGGAACTCTGTCGGTTGAGTTTTCTGAGTACATTAAGCAAAGAGGATATGAACTCCATGATGTAAAAGCATGTGGTCAGGGTTGGTGTTATGAGCTTGCTGTGGAGTATGAAGGAAAGCATGATAACAATAATGCATGTAGACGATTGCATTGTTATACAAGTTTGGACCCAGAGGATACCATTATAAAATCCTTCACACACATGCTTAGCTTGGCTTGCTTGGCAGAGGAGGTCCACATCGCTGTCCACAGAAAAAGGGTGACTCTGCAGATGAAGGAGCAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009308 GO:0009309 GO:0009555 GO:0009605 GO:0009653 GO:0009791 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010183 GO:0016043 GO:0016049 GO:0016740 GO:0016741 GO:0019637 GO:0019695 GO:0022414 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0040007 GO:0040011 GO:0042133 GO:0042136 GO:0042221 GO:0042330 GO:0042401 GO:0042425 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048229 GO:0048364 GO:0048468 GO:0048528 GO:0048588 GO:0048589 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050918 GO:0051704 GO:0052667 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090407 GO:0090696 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 Methyltransf_31

Protein Analysis

135

Amino Acids

15.71

Weight (kDa)

7.65

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	2 - 49	6e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48600 AT1G73600 AT1G73600 AT3G18000
fragaria_vesca	FvH4_5g17300 FvH4_5g17300 FvH4_5g17300 FvH4_5g17300
malus_domestica	MD06G1226700.v1.1 MD14G1236000.v1.1
prunus_persica	Prupe.5G233000_v2.0.a1 Prupe.5G233000_v2.0.a1
pyrus_communis	pycom06g20300 pycom14g19710
rosa_chinensis	RchiOBHm_Chr3g0488691 RchiOBHm_Chr7g0178471
rosa_laevigata	RLG00000005444
rosa_multiflora	Rmu_sc0001208.1_g000086 Rmu_sc0010235.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274870 Rroxscaffold_6G00393940
rosa_rugosa	Rorug03G0240800 Rorug06G0417300 Rorug06G0417400
rosa_samantha	Rh3BG325800 Rh3CG323300 Rh7BG015500 Rh7CG016200
rosa_wichuraiana	Rw0G013680 Rw7G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AarI	CACCTGC	1 cut(s)	391
Acc36I	ACCTGC	1 cut(s)	391
AccI	GTMKAC	1 cut(s)	259
AclWI	GGATC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	35, 76
AjnI	CCWGG	1 cut(s)	79
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	2 cut(s)	214, 330
AluI	AGCT	2 cut(s)	214, 330
AlwI	GGATC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	286, 352
AsuHPI	GGTGA	1 cut(s)	391
AvaII	GGWCC	2 cut(s)	286, 352
BciT130I	CCWGG	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	289
BfmI	CTRYAG	2 cut(s)	109, 386
BfuAI	ACCTGC	1 cut(s)	391
BfuI	GTATCC	1 cut(s)	289
BlpI	GCTNAGC	1 cut(s)	326
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	2 cut(s)	286, 352
BmgT120I	GGNCC	2 cut(s)	286, 352
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	326
BsaXI	ACNNNNNCTCC	3 cut(s)	75, 105, 389
BseBI	CCWGG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	362
BsgI	GTGCAG	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	56
Bsp1720I	GCTNAGC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	1 cut(s)	51
BssMI	GATC	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	45, 216, 337
BstDEI	CTNAG	2 cut(s)	144, 326
BstKTI	GATC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 341
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	3 cut(s)	192, 258, 325
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	2 cut(s)	109, 386
BsuI	GTATCC	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	343
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	3 cut(s)	45, 216, 337
Cfr13I	GGNCC	2 cut(s)	286, 352
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	5 cut(s)	176, 189, 239, 255, 322
CviJI	RGCY	6 cut(s)	12, 43, 79, 214, 330, 335
CviKI_1	RGCY	6 cut(s)	12, 43, 79, 214, 330, 335
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	144, 326
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	286, 352
EcoRII	CCWGG	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	256
FaeI	CATG	5 cut(s)	179, 192, 242, 258, 325
FatI	CATG	5 cut(s)	175, 188, 238, 254, 321
FblI	GTMKAC	1 cut(s)	259
Hin1II	CATG	5 cut(s)	179, 192, 242, 258, 325
HinfI	GANTC	1 cut(s)	382
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	3 cut(s)	260, 355, 367
Hpy188I	TCNGA	2 cut(s)	56, 145
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	3 cut(s)	260, 355, 367
HpyAV	CCTTC	3 cut(s)	224, 322, 388
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	5 cut(s)	28, 47, 254, 268, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 341
HpyF3I	CTNAG	2 cut(s)	144, 326
Hsp92II	CATG	5 cut(s)	179, 192, 242, 258, 325
Kzo9I	GATC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	7 cut(s)	57, 66, 93, 105, 182, 303, 386
MaeIII	GTNAC	2 cut(s)	14, 379
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	376
MnlI	CCTC	5 cut(s)	77, 155, 286, 340, 343
Mph1103I	ATGCAT	1 cut(s)	256
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	336, 341
NdeII	GATC	1 cut(s)	56
NlaIII	CATG	5 cut(s)	179, 192, 242, 258, 325
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	2 cut(s)	14, 379
NsiI	ATGCAT	1 cut(s)	256
NspI	RCATGY	3 cut(s)	192, 258, 325
PaqCI	CACCTGC	1 cut(s)	391
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	286, 352
PstI	CTGCAG	1 cut(s)	390
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	56
Sau96I	GGNCC	2 cut(s)	286, 352
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	4 cut(s)	216, 332, 354, 405
SfcI	CTRYAG	2 cut(s)	109, 386
SinI	GGWCC	2 cut(s)	286, 352
SmiMI	CAYNNNNRTG	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	110
TatI	WGTACW	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseFI	GTSAC	2 cut(s)	14, 379
Tsp45I	GTSAC	2 cut(s)	14, 379
TspDTI	ATGAA	3 cut(s)	183, 243, 407
VpaK11BI	GGWCC	2 cut(s)	286, 352
XceI	RCATGY	3 cut(s)	192, 258, 325
XmiI	GTMKAC	1 cut(s)	259
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.