Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00614

Orthogroup ID

OG0004941

Physical Location & Seq

Genomic Coordinates Forward (+)

7978 .. 9034

Gene Structure 1057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGATATACAGCCGTGACACCATTCTGCACATTCAAGACAAGCCTGCATTGTTCCGATCCTTTTACAAGTGGTTGAAGCCAGGAGGCAAAGTTCTCATCAATGATTACTGTAGGAGTGCTGGCACTCCGTCGGTTGAGTTTTCTGAGTACATTATGCAAAGAGGATATGAACTCCATGATGTAAAAGCATGTGGTCAGATGCTCAAGGATGCTGGTTTTGATGAGGTCATTGCTGAGAATCGTACTGAACAGCGGGAATTGAATGCTGTTGAGAAGGACAAGGAAGCAAGCATTCATCCAGGACTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009308 GO:0009309 GO:0009555 GO:0009605 GO:0009653 GO:0009791 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010183 GO:0016043 GO:0016049 GO:0016740 GO:0016741 GO:0019637 GO:0019695 GO:0022414 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0040007 GO:0040011 GO:0042133 GO:0042136 GO:0042221 GO:0042330 GO:0042401 GO:0042425 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048229 GO:0048364 GO:0048468 GO:0048528 GO:0048588 GO:0048589 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050918 GO:0051704 GO:0052667 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090407 GO:0090696 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 Methyltransf_31

Protein Analysis

103

Amino Acids

11.86

Weight (kDa)

5.89

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	2 - 74	4.5e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48600 AT1G73600 AT1G73600 AT3G18000
fragaria_vesca	FvH4_5g17300 FvH4_5g17300 FvH4_5g17300 FvH4_5g17300
malus_domestica	MD06G1226700.v1.1 MD14G1236000.v1.1
prunus_persica	Prupe.5G233000_v2.0.a1 Prupe.5G233000_v2.0.a1
pyrus_communis	pycom06g20300 pycom14g19710
rosa_chinensis	RchiOBHm_Chr3g0488691 RchiOBHm_Chr7g0178471
rosa_laevigata	RLG00000005444
rosa_multiflora	Rmu_sc0001208.1_g000086 Rmu_sc0010235.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274870 Rroxscaffold_6G00393940
rosa_rugosa	Rorug03G0240800 Rorug06G0417300 Rorug06G0417400
rosa_samantha	Rh3BG325800 Rh3CG323300 Rh7BG015500 Rh7CG016200
rosa_wichuraiana	Rw0G013680 Rw7G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	149, 244
AgsI	TTSAA	3 cut(s)	35, 76, 262
AjnI	CCWGG	2 cut(s)	79, 298
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AlwI	GGATC	1 cut(s)	51
BciT130I	CCWGG	2 cut(s)	81, 300
BfmI	CTRYAG	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	81, 300
BmrFI	CCNGG	2 cut(s)	81, 300
BmsI	GCATC	2 cut(s)	189, 199
BpuEI	CTTGAG	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	81, 300
BseGI	GGATG	2 cut(s)	214, 295
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	135, 225
BsgI	GTGCAG	1 cut(s)	11
BsmI	GAATGC	2 cut(s)	268, 291
Bsp143I	GATC	1 cut(s)	56
BspACI	CCGC	1 cut(s)	253
BspCNI	CTCAG	2 cut(s)	136, 226
BspPI	GGATC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	228
BssMI	GATC	1 cut(s)	56
Bst2UI	CCWGG	2 cut(s)	81, 300
Bst4CI	ACNGT	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	45, 121, 289
BstDEI	CTNAG	2 cut(s)	144, 234
BstF5I	GGATG	2 cut(s)	214, 295
BstKTI	GATC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	81, 300
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	2 cut(s)	79, 298
BstSFI	CTRYAG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	214, 295
Cac8I	GCNNGC	3 cut(s)	45, 121, 289
Csp6I	GTAC	2 cut(s)	148, 243
CviAII	CATG	2 cut(s)	176, 189
CviJI	RGCY	3 cut(s)	12, 43, 79
CviKI_1	RGCY	3 cut(s)	12, 43, 79
CviQI	GTAC	2 cut(s)	148, 243
DdeI	CTNAG	2 cut(s)	144, 234
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	79, 298
FaeI	CATG	2 cut(s)	179, 192
FaiI	YATR	5 cut(s)	7, 155, 168, 177, 190
FatI	CATG	2 cut(s)	175, 188
FauI	CCCGC	1 cut(s)	246
FokI	GGATG	2 cut(s)	221, 282
Hin1II	CATG	2 cut(s)	179, 192
HinfI	GANTC	1 cut(s)	238
Hpy188I	TCNGA	4 cut(s)	56, 145, 198, 311
Hpy188III	TCNNGA	1 cut(s)	35
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	3 cut(s)	28, 47, 157
HpyF3I	CTNAG	2 cut(s)	144, 234
Hsp92II	CATG	2 cut(s)	179, 192
Kzo9I	GATC	1 cut(s)	56
LpnPI	CCDG	6 cut(s)	57, 66, 93, 105, 198, 285
LweI	GCATC	2 cut(s)	189, 199
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MluCI	AATT	1 cut(s)	257
MnlI	CCTC	3 cut(s)	77, 155, 217
MspA1I	CMGCKG	1 cut(s)	253
MspR9I	CCNGG	2 cut(s)	81, 300
Mva1269I	GAATGC	2 cut(s)	268, 291
MvaI	CCWGG	2 cut(s)	81, 300
NdeII	GATC	1 cut(s)	56
NlaIII	CATG	2 cut(s)	179, 192
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	192
PctI	GAATGC	2 cut(s)	268, 291
PfeI	GAWTC	1 cut(s)	238
PfoI	TCCNGGA	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	79, 298
PspGI	CCWGG	2 cut(s)	79, 298
RsaI	GTAC	2 cut(s)	149, 244
RsaNI	GTAC	2 cut(s)	148, 243
Sau3AI	GATC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	81, 300
SetI	ASST	1 cut(s)	228
SfaNI	GCATC	2 cut(s)	189, 199
SfcI	CTRYAG	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	253
StyD4I	CCNGG	2 cut(s)	79, 298
TaaI	ACNGT	1 cut(s)	110
TasI	AATT	1 cut(s)	257
TatI	WGTACW	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	183, 284
TspGWI	ACGGA	1 cut(s)	117
XceI	RCATGY	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.