Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004941

Physical Location & Seq

Genomic Coordinates Forward (+)

22508833 .. 22511110

Gene Structure 2278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0240800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTCTGCAGTCTACATTCTTTCCTCGCAGCGAATTTCGGGTTGAAATTGTACCGAAATGAGTCTGTGTGCTCCGATTCTAGTGTAAATTGTGCTGTCAATGGAGGTCAGGGAGGGTATGTCTCTGCGTGGGACGAGAAACCATATGAGTTTCTTCTGAATGGGAAAAGGGCTTACTTAGATGAACAAGACGTGGTCACATTCCTTGATCCTCCTAAAGAGTTGATTCCTTTGGACTCGACTTCTTATAATCCTGCTGCATATCTTTGGCCATTCTCAATTGAATTTAAAGTTGAAGAAAGAGTCATAGCATTTCATGGCTTCTACTCAGAATTCATCCCACAGTTCCGATTCCAATTCATCCCAAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009308 GO:0009309 GO:0009555 GO:0009605 GO:0009653 GO:0009791 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010183 GO:0016043 GO:0016049 GO:0016740 GO:0016741 GO:0019637 GO:0019695 GO:0022414 GO:0022622 GO:0030154 GO:0032259 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0040007 GO:0040011 GO:0042133 GO:0042136 GO:0042221 GO:0042330 GO:0042401 GO:0042425 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045017 GO:0046470 GO:0046474 GO:0046486 GO:0048229 GO:0048364 GO:0048468 GO:0048528 GO:0048588 GO:0048589 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050918 GO:0051704 GO:0052667 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090407 GO:0090696 GO:0097164 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 Methyltransf_31

Protein Analysis

124

Amino Acids

14.21

Weight (kDa)

4.9

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48600 AT1G73600 AT1G73600 AT3G18000
fragaria_vesca	FvH4_5g17300 FvH4_5g17300 FvH4_5g17300 FvH4_5g17300
malus_domestica	MD06G1226700.v1.1 MD14G1236000.v1.1
prunus_persica	Prupe.5G233000_v2.0.a1 Prupe.5G233000_v2.0.a1
pyrus_communis	pycom06g20300 pycom14g19710
rosa_chinensis	RchiOBHm_Chr3g0488691 RchiOBHm_Chr7g0178471
rosa_laevigata	RLG00000005444
rosa_multiflora	Rmu_sc0001208.1_g000086 Rmu_sc0010235.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274870 Rroxscaffold_6G00393940
rosa_rugosa	Rorug03G0240800 Rorug06G0417300 Rorug06G0417400
rosa_samantha	Rh3BG325800 Rh3CG323300 Rh7BG015500 Rh7CG016200
rosa_wichuraiana	Rw0G013680 Rw7G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	13
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	269
AcsI	RAATTY	3 cut(s)	34, 284, 332
AfaI	GTAC	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	46, 284, 296
AjiI	CACGTC	1 cut(s)	193
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	29, 257
ApoI	RAATTY	3 cut(s)	34, 284, 332
BalI	TGGCCA	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	41, 244
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	7
BisI	GCNGC	2 cut(s)	30, 258
BlsI	GCNGC	2 cut(s)	31, 259
BmgBI	CACGTC	1 cut(s)	193
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
BseGI	GGATG	2 cut(s)	336, 360
BseMII	CTCAG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	41, 244
BshFI	GGCC	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	341
BspMAI	CTGCAG	1 cut(s)	11
BspPI	GGATC	1 cut(s)	203
BssMI	GATC	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	178, 328
BstF5I	GGATG	2 cut(s)	336, 360
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	2 cut(s)	41, 244
BsuRI	GGCC	1 cut(s)	271
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	336, 360
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	3 cut(s)	173, 271, 321
CviKI_1	RGCY	3 cut(s)	173, 271, 321
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	178, 328
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraI	TTTAAA	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	332
FaeI	CATG	1 cut(s)	320
FaiI	YATR	7 cut(s)	120, 145, 147, 249, 262, 308, 318
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	1 cut(s)	316
FauNDI	CATATG	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	30, 258
FokI	GGATG	2 cut(s)	323, 347
Fsp4HI	GCNGC	2 cut(s)	30, 258
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	2 cut(s)	30, 258
HaeIII	GGCC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	320
HinfI	GANTC	6 cut(s)	62, 77, 226, 236, 303, 351
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	5 cut(s)	76, 159, 331, 350, 374
Hpy8I	GTNNAC	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	9, 260
HpyF3I	CTNAG	2 cut(s)	178, 328
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	2 cut(s)	95, 267
Lsp1109I	GCAGC	2 cut(s)	41, 244
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	146, 308
MfeI	CAATTG	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	74
MlsI	TGGCCA	1 cut(s)	271
MluCI	AATT	7 cut(s)	34, 47, 88, 279, 284, 332, 356
MluNI	TGGCCA	1 cut(s)	271
MlyI	GAGTC	3 cut(s)	71, 230, 312
MnlI	CCTC	4 cut(s)	35, 98, 107, 222
Mox20I	TGGCCA	1 cut(s)	271
MscI	TGGCCA	1 cut(s)	271
MseI	TTAA	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	271
MunI	CAATTG	1 cut(s)	279
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	196
PfeI	GAWTC	3 cut(s)	77, 226, 351
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	31, 259
PleI	GAGTC	3 cut(s)	70, 230, 311
PpsI	GAGTC	3 cut(s)	70, 230, 311
PsiI	TTATAA	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	11
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	30, 258
Sau3AI	GATC	1 cut(s)	208
SchI	GAGTC	3 cut(s)	71, 230, 312
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	2 cut(s)	109, 195
SfcI	CTRYAG	1 cut(s)	7
Sse9I	AATT	7 cut(s)	34, 47, 88, 279, 284, 332, 356
SspMI	CTAG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	239
TasI	AATT	7 cut(s)	34, 47, 88, 279, 284, 332, 356
TfiI	GAWTC	3 cut(s)	77, 226, 351
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	29, 257
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	4 cut(s)	198, 305, 325, 349
Tth111I	GACNNNGTC	1 cut(s)	194
XapI	RAATTY	3 cut(s)	34, 284, 332
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.