Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006594

Physical Location & Seq

Genomic Coordinates Reverse (-)

21087793 .. 21090722

Gene Structure 2930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGATGCTGCAAAGGTAGAAGAACTGAAGGAGTTCATCAGCAAGTGCAAGTCAAACCCTTCAATTGTTCACACCCCTTCTCTCGCCTTCTTCAAGTCATATCTCCAAAGCCTCGGCGCTCGGATTCCGCCGGTTCCGAAAATGGATAAAGATGATGGTGACATGTCAGACACGAAACAACATTTTGATGCCAAACGTGATCCATCTGGGAATAATGATGATGATATTGTTGAATCTGATATCGAGTTGGATGTTACTGATGTTGTGGAGCCTGATAATGATCCTCCACAGAAGATGGGAGACCCGTCAATTGAAGTTACGGAAGAAATGCAGGATGCTGCACAAATAGAAAAATCAAAAGCTATTGATGCTGTCTCTGAAGGTAAGCTGGACGAAGCCATAGATCTTATAACAGAAGCCATAATGTTGAATCCAGTTTCAGCTATACTAAAAGCAACCAGAGCTAGTTTCTTTGTCAAATTGAATAAACCAAATGCGGCAATTTGTGATGCTAATGCAGCTTTAGAGATCAACCCCGACTCTGCAAAAGGATATAAAATAAGAGGAATGGCTAAGGCCATGTTGGGTCAATGGGAAGAAGCAGCGAGTGATCTGCATGTAGCATCAAAGTTAGATTATGATGAGGAGATTGGTTTGGTGCTTAAAAAGGTTGAACCTAATGTCCACAAAATTGAAGAGCATCGCAGAAAATATGAACGCCTGAGTAAAGAAAGGGAGATAAAAAGTGCTGAACAGGAGAGGAAGCGGAAAGCTGAAGCTCAAGATCGAGATGCATTGTCTGCTCTTAAGGATGGGGAAGTCATTGGTATACACTCAGCCAGAGAATTAGAGACAAAATTGAATGCTGCTTCAAAGATGTCGCGCCTTACAATCCTCTACTTCACAGCAACATGGTGTGGTCCTTGCCGCTTCATATCTCCTTTGTATACAAGCTTAGCTGGAAATTACAAAAAAGTCGTGTTTTTGAAAGTTGACATTGATGAGGCAAGAGATGTGGCTGCAAACTGGAATATCAGCGGTGTTCCGGCCTTTTTCTTTGTAAGAAACGGTAAGGAGGTTGACAAGATGGTGGGGGCAGACAAAACTGCACTAGAAAGGAAGATTGCACAACATGCAGGCTCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006457 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016043 GO:0016491 GO:0016667 GO:0016671 GO:0022607 GO:0030544 GO:0031072 GO:0042802 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

383

Amino Acids

42.34

Weight (kDa)

5.28

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HipN	PF18253	2 - 43	6.8e-19	Hsp70-interacting protein N N-terminal domain
Thioredoxin	PF00085	292 - 376	5.2e-24	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17880 AT3G17880
fragaria_vesca	FvH4_5g17540 FvH4_5g17540 FvH4_5g17540 FvH4_5g17540
malus_domestica	MD06G1228800.v1.1 MD14G1238000.v1.1
prunus_persica	Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018600_v2.0.a1 Prupe.2G018700_v2.0.a1 Prupe.5G235200_v2.0.a1
pyrus_communis	pycom06g20510 pycom14g19910
rosa_chinensis	RchiOBHm_Chr7g0178111
rosa_laevigata	RLG00000005470
rosa_multiflora	Rmu_sc0000425.1_g000010
rosa_roxburghii	Rroxscaffold_3G00275170
rosa_rugosa	Rorug06G0413500 Rorug06G0413600
rosa_samantha	Rh7AG012900 Rh7BG012800 Rh7CG012800 Rh7DG013100
rosa_wichuraiana	Rw7G001020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
AccI	GTMKAC	2 cut(s)	829, 947
AccII	CGCG	1 cut(s)	883
AciI	CCGC	5 cut(s)	128, 497, 766, 928, 1038
AclWI	GGATC	2 cut(s)	194, 275
AcuI	CTGAAG	3 cut(s)	47, 399, 795
AflII	CTTAAG	1 cut(s)	806
AflIII	ACRYGT	1 cut(s)	162
AloI	GAACNNNNNNTCC	2 cut(s)	666, 698
AluBI	AGCT	9 cut(s)	362, 388, 443, 464, 521, 773, 779, 954, 959
AluI	AGCT	9 cut(s)	362, 388, 443, 464, 521, 773, 779, 954, 959
Alw26I	GTCTC	3 cut(s)	294, 379, 845
AlwI	GGATC	2 cut(s)	194, 275
AoxI	GGCC	2 cut(s)	576, 1047
ApeKI	GCWGC	6 cut(s)	8, 338, 518, 602, 866, 1019
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	119, 885
AspS9I	GGNCC	1 cut(s)	920
AsuHPI	GGTGA	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	920
BbvI	GCAGC	5 cut(s)	325, 530, 614, 853, 1006
BccI	CCATC	5 cut(s)	149, 211, 289, 806, 1081
BcgI	CGANNNNNNTGC	2 cut(s)	595, 629
BcoDI	GTCTC	3 cut(s)	294, 379, 845
BfaI	CTAG	2 cut(s)	465, 1112
BfoI	RGCGCY	1 cut(s)	120
BfrI	CTTAAG	1 cut(s)	806
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	8 cut(s)	9, 339, 498, 519, 603, 867, 928, 1020
BlpI	GCTNAGC	1 cut(s)	955
BlsI	GCNGC	8 cut(s)	10, 340, 499, 520, 604, 868, 929, 1021
Bme18I	GGWCC	1 cut(s)	920
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	2 cut(s)	135, 270
BmsI	GCATC	7 cut(s)	178, 325, 358, 499, 632, 709, 781
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	955
BpuEI	CTTGAG	1 cut(s)	765
BsaBI	GATNNNNATC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	434, 1031
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	4 cut(s)	10, 256, 340, 817
BseJI	GATNNNNATC	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	713, 849
BseNI	ACTGG	2 cut(s)	434, 1031
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	5 cut(s)	325, 530, 614, 853, 1006
BsgI	GTGCAG	2 cut(s)	324, 1092
Bsh1236I	CGCG	1 cut(s)	883
BshFI	GGCC	2 cut(s)	578, 1049
BsiSI	CCGG	2 cut(s)	131, 1046
BsmAI	GTCTC	3 cut(s)	294, 379, 845
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	2 cut(s)	578, 1049
Bso31I	GGTCTC	1 cut(s)	294
Bsp143I	GATC	6 cut(s)	199, 280, 403, 528, 610, 784
Bsp1720I	GCTNAGC	1 cut(s)	955
BspACI	CCGC	5 cut(s)	128, 497, 766, 928, 1038
BspANI	GGCC	2 cut(s)	578, 1049
BspCNI	CTCAG	2 cut(s)	714, 848
BspFNI	CGCG	1 cut(s)	883
BspLI	GGNNCC	2 cut(s)	135, 270
BspPI	GGATC	2 cut(s)	194, 275
BspQI	GCTCTTC	1 cut(s)	690
BspTI	CTTAAG	1 cut(s)	806
BspTNI	GGTCTC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	434, 1031
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	6 cut(s)	199, 280, 403, 528, 610, 784
BssNAI	GTATAC	2 cut(s)	830, 948
Bst1107I	GTATAC	2 cut(s)	830, 948
Bst4CI	ACNGT	1 cut(s)	1070
Bst6I	CTCTTC	1 cut(s)	690
BstAFI	CTTAAG	1 cut(s)	806
BstAPI	GCANNNNNTGC	2 cut(s)	800, 1133
BstC8I	GCNNGC	1 cut(s)	1138
BstDEI	CTNAG	5 cut(s)	573, 722, 835, 955, 1141
BstF5I	GGATG	4 cut(s)	10, 256, 340, 817
BstFNI	CGCG	1 cut(s)	883
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	2 cut(s)	119, 885
BstKTI	GATC	6 cut(s)	202, 283, 406, 531, 613, 787
BstMAI	GTCTC	3 cut(s)	294, 379, 845
BstMBI	GATC	6 cut(s)	199, 280, 403, 528, 610, 784
BstMWI	GCNNNNNNNGC	5 cut(s)	368, 461, 518, 800, 1133
BstNSI	RCATGY	3 cut(s)	166, 620, 1136
BstUI	CGCG	1 cut(s)	883
BstV1I	GCAGC	5 cut(s)	325, 530, 614, 853, 1006
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BstZ17I	GTATAC	2 cut(s)	830, 948
BsuRI	GGCC	2 cut(s)	578, 1049
BtgZI	GCGATG	1 cut(s)	686
BtsCI	GGATG	4 cut(s)	10, 256, 340, 817
Cac8I	GCNNGC	1 cut(s)	1138
CfoI	GCGC	2 cut(s)	119, 885
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	920
CspCI	CAANNNNNGTGG	2 cut(s)	996, 1031
CviAII	CATG	5 cut(s)	163, 580, 617, 912, 1133
DdeI	CTNAG	5 cut(s)	573, 722, 835, 955, 1141
DpnI	GATC	6 cut(s)	201, 282, 405, 530, 612, 786
DpnII	GATC	6 cut(s)	199, 280, 403, 528, 610, 784
Eam1104I	CTCTTC	1 cut(s)	690
EarI	CTCTTC	1 cut(s)	690
EciI	GGCGGA	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	920
Eco57I	CTGAAG	3 cut(s)	47, 399, 795
EcoRV	GATATC	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	796
FaeI	CATG	5 cut(s)	166, 583, 620, 915, 1136
FatI	CATG	5 cut(s)	162, 579, 616, 911, 1132
FblI	GTMKAC	2 cut(s)	829, 947
Fnu4HI	GCNGC	8 cut(s)	9, 339, 498, 519, 603, 867, 928, 1020
FokI	GGATG	4 cut(s)	17, 263, 347, 824
Fsp4HI	GCNGC	8 cut(s)	9, 339, 498, 519, 603, 867, 928, 1020
FspBI	CTAG	2 cut(s)	465, 1112
GlaI	GCGC	2 cut(s)	118, 884
GluI	GCNGC	8 cut(s)	9, 339, 498, 519, 603, 867, 928, 1020
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	578, 1049
HapII	CCGG	2 cut(s)	131, 1046
HhaI	GCGC	2 cut(s)	119, 885
Hin1II	CATG	5 cut(s)	166, 583, 620, 915, 1136
Hin6I	GCGC	2 cut(s)	117, 883
HinP1I	GCGC	2 cut(s)	117, 883
HincII	GTYRAC	2 cut(s)	994, 1081
HindII	GTYRAC	2 cut(s)	994, 1081
HindIII	AAGCTT	1 cut(s)	952
HinfI	GANTC	4 cut(s)	124, 233, 430, 539
HpaII	CCGG	2 cut(s)	131, 1046
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	6 cut(s)	70, 685, 830, 948, 994, 1081
Hpy188I	TCNGA	6 cut(s)	123, 138, 169, 238, 379, 1148
Hpy188III	TCNNGA	2 cut(s)	782, 788
Hpy8I	GTNNAC	6 cut(s)	70, 685, 830, 948, 994, 1081
HpyAV	CCTTC	5 cut(s)	22, 69, 87, 97, 374
HpyCH4III	ACNGT	1 cut(s)	1070
HpyCH4IV	ACGT	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	5 cut(s)	368, 461, 518, 800, 1133
HpyF3I	CTNAG	5 cut(s)	573, 722, 835, 955, 1141
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	5 cut(s)	166, 583, 620, 915, 1136
HspAI	GCGC	2 cut(s)	117, 883
Kzo9I	GATC	6 cut(s)	199, 280, 403, 528, 610, 784
LguI	GCTCTTC	1 cut(s)	690
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	5 cut(s)	325, 530, 614, 853, 1006
LweI	GCATC	7 cut(s)	178, 325, 358, 499, 632, 709, 781
MaeI	CTAG	2 cut(s)	465, 1112
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	3 cut(s)	158, 253, 316
MalI	GATC	6 cut(s)	201, 282, 405, 530, 612, 786
MboI	GATC	6 cut(s)	199, 280, 403, 528, 610, 784
MboII	GAAGA	7 cut(s)	32, 82, 304, 335, 608, 707, 1132
MfeI	CAATTG	2 cut(s)	63, 309
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	8 cut(s)	63, 309, 479, 501, 690, 845, 857, 964
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	8 cut(s)	122, 294, 557, 637, 753, 905, 997, 1069
Mph1103I	ATGCAT	1 cut(s)	796
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	2 cut(s)	663, 807
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	1038
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	2 cut(s)	131, 1046
MunI	CAATTG	2 cut(s)	63, 309
Mva1269I	GAATGC	1 cut(s)	868
MvnI	CGCG	1 cut(s)	883
MwoI	GCNNNNNNNGC	5 cut(s)	368, 461, 518, 800, 1133
NdeII	GATC	6 cut(s)	199, 280, 403, 528, 610, 784
NlaIII	CATG	5 cut(s)	166, 583, 620, 915, 1136
NlaIV	GGNNCC	2 cut(s)	135, 270
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	3 cut(s)	166, 620, 1136
PciI	ACATGT	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	690
PctI	GAATGC	1 cut(s)	868
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	3 cut(s)	124, 233, 430
PkrI	GCNGC	8 cut(s)	10, 340, 499, 520, 604, 868, 929, 1021
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
PscI	ACATGT	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	410
PspN4I	GGNNCC	2 cut(s)	135, 270
PspPI	GGNCC	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	2 cut(s)	663, 807
SatI	GCNGC	8 cut(s)	9, 339, 498, 519, 603, 867, 928, 1020
Sau3AI	GATC	6 cut(s)	199, 280, 403, 528, 610, 784
Sau96I	GGNCC	1 cut(s)	920
SchI	GAGTC	1 cut(s)	533
SfaNI	GCATC	7 cut(s)	178, 325, 358, 499, 632, 709, 781
SinI	GGWCC	1 cut(s)	920
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	2 cut(s)	780, 806
SmoI	CTYRAG	2 cut(s)	780, 806
Sse9I	AATT	8 cut(s)	63, 309, 479, 501, 690, 845, 857, 964
SsiI	CCGC	5 cut(s)	128, 497, 766, 928, 1038
SspMI	CTAG	2 cut(s)	465, 1112
TaaI	ACNGT	1 cut(s)	1070
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	243, 787
TasI	AATT	8 cut(s)	63, 309, 479, 501, 690, 845, 857, 964
TauI	GCSGC	2 cut(s)	500, 930
TfiI	GAWTC	3 cut(s)	124, 233, 430
Tru1I	TTAA	2 cut(s)	663, 807
Tru9I	TTAA	2 cut(s)	663, 807
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	6 cut(s)	8, 338, 518, 602, 866, 1019
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	3 cut(s)	25, 729, 922
TspGWI	ACGGA	1 cut(s)	335
Vha464I	CTTAAG	1 cut(s)	806
VpaK11BI	GGWCC	1 cut(s)	920
XceI	RCATGY	3 cut(s)	166, 620, 1136
XmiI	GTMKAC	2 cut(s)	829, 947
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	465, 1112
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.