Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002850

Physical Location & Seq

Genomic Coordinates Forward (+)

21166303 .. 21167710

Gene Structure 1408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAAGAAGATTTGAGTAGTACTAGACACAAGGAGAAGGGAAAAGAAGCAAATATTGAAGATAATGAGATCCTCAAAAAGAAAATCTCTACTCATCCTTTATATGGTTTGTTGGTTGAAAATCATTTGGACTGCTTGAAGGTTAGTGGAATCATCAGTGAACTAGAGGAAAACGATGGCTGCAGAGATATGAAACAGCTTGACTACAACTGCAATGCCAATTTAGGCGTGTTTGGACAATCTGACCTCGATCACTTCATGGAAGCGTATTGCTTGGCACTAGGGAAGCTGAAAGCAGCAATGGAGGAACCTCAGCAGAAGTCCATGGCTTTCATAAGTAACATGCAGCTGCAACTCGAGGAGATCACAAACAACTCCCATTTACCTGATCAACCTGCACCTGCCTCACTTTCTGGTGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0009954 GO:0010468 GO:0010556 GO:0010557 GO:0010589 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KNOX1 KNOX2

Protein Analysis

142

Amino Acids

15.75

Weight (kDa)

4.72

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	25 - 49	9.9e-07	KNOX1 domain
KNOX2	PF03791	82 - 123	2.1e-07	KNOX2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14760 AT1G14760 AT1G14760
fragaria_vesca	FvH4_4g33370 FvH4_4g33370 FvH4_5g17670 FvH4_5g17670
malus_domestica	MD06G1232400.v1.1 MD13G1018900.v1.1 MD14G1239200.v1.1
prunus_persica	Prupe.1G335000_v2.0.a1 Prupe.1G335000_v2.0.a1 Prupe.5G236700_v2.0.a1
pyrus_communis	pycom06g20660 pycom14g20010
rosa_chinensis	RchiOBHm_Chr4g0442631 RchiOBHm_Chr7g0177981
rosa_laevigata	RLG00000005445 RLG00000005485 RLG00000005997
rosa_multiflora	Rmu_co8272209.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274890 Rroxscaffold_3G00275330 Rroxscaffold_5G00383430
rosa_rugosa	Rorug04G0341500 Rorug04G0341600 Rorug06G0412000 Rorug06G0412100
rosa_samantha	Rh4AG394200 Rh4BG407200 Rh4CG422600 Rh4DG401200 Rh7AG011400 Rh7BG010900 Rh7BG015300 Rh7CG011500 Rh7DG011400
rosa_wichuraiana	Rw4G034060 Rw7G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	409
Acc36I	ACCTGC	2 cut(s)	403, 409
AclWI	GGATC	1 cut(s)	64
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	59, 119, 139
AluBI	AGCT	4 cut(s)	199, 289, 349, 423
AluI	AGCT	4 cut(s)	199, 289, 349, 423
AlwI	GGATC	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	356
ApeKI	GCWGC	4 cut(s)	180, 296, 346, 349
AvaI	CYCGRG	1 cut(s)	356
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	4 cut(s)	167, 308, 336, 358
BccI	CCATC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	388
BfaI	CTAG	4 cut(s)	24, 164, 281, 424
BfmI	CTRYAG	1 cut(s)	181
BfuAI	ACCTGC	2 cut(s)	403, 409
BisI	GCNGC	4 cut(s)	181, 297, 347, 350
BlsI	GCNGC	4 cut(s)	182, 298, 348, 351
BmcAI	AGTACT	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse3DI	GCAATG	2 cut(s)	220, 306
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	2 cut(s)	220, 306
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	4 cut(s)	167, 308, 336, 358
BsgI	GTGCAG	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	356
Bsp143I	GATC	4 cut(s)	69, 250, 363, 388
Bsp19I	CCATGG	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	185
BspMI	ACCTGC	2 cut(s)	403, 409
BspPI	GGATC	1 cut(s)	64
BsrDI	GCAATG	2 cut(s)	220, 306
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	4 cut(s)	69, 250, 363, 388
BssT1I	CCWWGG	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	4 cut(s)	72, 253, 366, 391
BstMBI	GATC	4 cut(s)	69, 250, 363, 388
BstNSI	RCATGY	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	4 cut(s)	167, 308, 336, 358
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	163
BveI	ACCTGC	2 cut(s)	403, 409
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	3 cut(s)	259, 325, 343
CviJI	RGCY	6 cut(s)	180, 199, 289, 329, 349, 423
CviKI_1	RGCY	6 cut(s)	180, 199, 289, 329, 349, 423
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	4 cut(s)	71, 252, 365, 390
DpnII	GATC	4 cut(s)	69, 250, 363, 388
Eco130I	CCWWGG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	3 cut(s)	262, 328, 346
FaiI	YATR	7 cut(s)	103, 105, 191, 260, 326, 335, 344
FatI	CATG	3 cut(s)	258, 324, 342
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	4 cut(s)	181, 297, 347, 350
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	181, 297, 347, 350
FspBI	CTAG	4 cut(s)	24, 164, 281, 424
GluI	GCNGC	4 cut(s)	181, 297, 347, 350
Hin1II	CATG	3 cut(s)	262, 328, 346
HinfI	GANTC	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	31, 133
HpyCH4V	TGCA	5 cut(s)	183, 213, 346, 352, 398
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	262, 328, 346
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	69, 250, 363, 388
LpnPI	CCDG	4 cut(s)	399, 399, 408, 414
Lsp1109I	GCAGC	4 cut(s)	167, 308, 336, 358
MaeI	CTAG	4 cut(s)	24, 164, 281, 424
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	4 cut(s)	71, 252, 365, 390
MboI	GATC	4 cut(s)	69, 250, 363, 388
MboII	GAAGA	3 cut(s)	17, 20, 71
MflI	RGATCY	1 cut(s)	69
MluCI	AATT	1 cut(s)	220
MnlI	CCTC	7 cut(s)	83, 160, 257, 298, 321, 352, 415
MspA1I	CMGCKG	1 cut(s)	349
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	4 cut(s)	69, 250, 363, 388
NlaIII	CATG	3 cut(s)	262, 328, 346
NlaIV	GGNNCC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	356
PaqCI	CACCTGC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	4 cut(s)	182, 298, 348, 351
PspN4I	GGNNCC	1 cut(s)	309
PspXI	VCTCGAGB	1 cut(s)	356
PstI	CTGCAG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SatI	GCNGC	4 cut(s)	181, 297, 347, 350
Sau3AI	GATC	4 cut(s)	69, 250, 363, 388
ScaI	AGTACT	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	220
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	4 cut(s)	24, 164, 281, 424
StyI	CCWWGG	1 cut(s)	324
TaqI	TCGA	2 cut(s)	249, 357
TasI	AATT	1 cut(s)	220
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	150
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	4 cut(s)	180, 296, 346, 349
TspDTI	ATGAA	3 cut(s)	206, 247, 322
TspRI	CASTG	1 cut(s)	163
XceI	RCATGY	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	356
XspI	CTAG	4 cut(s)	24, 164, 281, 424
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.