pycom14g20370
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0011275
Physical Location & Seq
Reverse (-)
21422170 .. 21423484
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 813 bp
ATGTGCACTAGAGGCCATTGGAGGCCAGCTGAAGACGAGAAGCTTAGGGAGTTGGTGGAACGATATGGACCTCATAACTGGAACGCAATAGCAGAAAAGCTCCAAGGAAGATCAGGGAAAAGCTGTAGGTTGAGATGGTTCAATCAGTTGGACCCAAGAATCAATAGGAACCCCTTCACAGAAGAGGAAGAAGAGCGTCTCTTAGTTTCTCACCGCATTCATGGAAATAGATGGGCTGTTATTGCAAGGCTTTTCCCTGGACGTACCGATAACGCAGTCAAGAACCATTGGCATGTCATCATGGCACGCAGATGCAGAGAAAGATCTAGGCTTAATCACTCCAAATTAATAAGGAATACTTCTACTGCTCAAACCTCGTTCATGAGTATCATTACTAACAACAATGAACCAAAATCCTCTTCAAAACAAGAACATCCCCTGCAGATCAATTGCGATATCGGCACATGGAACCTGGATTCATATAATTATATTGGGAAATACTACTCATGCAGCGACAGAAATTATCATCAATATCGGCCAGCTTTCACTCATAGCCCTCCTCCTCCATTTCCAAAAGAGTTCTATCGCAATACCTGCAGTGCCACAATGCACCAAGATCATAATAAAGATCAGCCAATTGAGTTTTACGATTTTCTCCAAGTAAATACTGAGTCTAATGGAAGTGAAGTGATAGATAATGCAAGAAAGGAGGAGGAGGAGGTGGATCAGGAAGGTACGGGACAACAGAAAAGCAACGTGGCCGGTCTTCCTTTTATCGATTTCTTAGCTGTTAATAATGGGATTTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009832 GO:0009834 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042546 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901347 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1902074 GO:1903338 GO:1903339 GO:1903340 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2000652 GO:2001023 GO:2001038 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

271

Amino Acids

31.56

Weight (kDa)

8.19

Isoelectric Point (pI)

64.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 4 - 50 2.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 7 - 67 7.3e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 56 - 98 2.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 59 - 102 4e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17950 AT1G73410 AT1G73410
fragaria_vesca FvH4_5g17970
malus_domestica MD06G1235300.v1.1 MD14G1242300.v1.1
prunus_persica Prupe.5G240000_v2.0.a1
pyrus_communis pycom06g21020 pycom14g20370
rosa_chinensis RchiOBHm_Chr7g0177631
rosa_laevigata RLG00000005518
rosa_multiflora Rmu_ssc0000330.1_g000016
rosa_roxburghii Rroxscaffold_3G00275710
rosa_rugosa Rorug06G0408100 Rorug06G0408200
rosa_samantha Rh7AG007400 Rh7BG007400 Rh7CG007900 Rh7DG007600
rosa_wichuraiana Rw7G000630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 602
AciI CCGC 1 cut(s) 214
AclWI GGATC 1 cut(s) 732
AcoI YGGCCR 2 cut(s) 536, 759
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 2 cut(s) 265, 736
AgsI TTSAA 2 cut(s) 142, 423
AjnI CCWGG 2 cut(s) 256, 471
AjuI GAANNNNNNNTTGG 2 cut(s) 403, 435
AluBI AGCT 6 cut(s) 29, 43, 100, 123, 542, 788
AluI AGCT 6 cut(s) 29, 43, 100, 123, 542, 788
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 203
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 1 cut(s) 732
AoxI GGCC 4 cut(s) 13, 23, 536, 759
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 510
AseI ATTAAT 1 cut(s) 347
Asp700I GAANNNNTTC 1 cut(s) 173
AspS9I GGNCC 2 cut(s) 68, 151
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 2 cut(s) 68, 151
BaeGI GKGCMC 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 39, 758
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 522
BccI CCATC 2 cut(s) 129, 225
BciT130I CCWGG 2 cut(s) 258, 473
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 2 cut(s) 9, 327
BfmI CTRYAG 3 cut(s) 124, 440, 595
BfuAI ACCTGC 1 cut(s) 602
BglII AGATCT 1 cut(s) 323
BisI GCNGC 1 cut(s) 511
BlsI GCNGC 1 cut(s) 512
Bme1390I CCNGG 2 cut(s) 258, 473
Bme18I GGWCC 2 cut(s) 68, 151
BmgT120I GGNCC 2 cut(s) 68, 151
BmiI GGNNCC 3 cut(s) 153, 170, 470
BmrFI CCNGG 2 cut(s) 258, 473
BmsI GCATC 1 cut(s) 302
BpiI GAAGAC 2 cut(s) 39, 758
Bpu10I CCTNAGC 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 777
BsaJI CCNNGG 2 cut(s) 103, 256
Bse118I RCCGGY 1 cut(s) 761
Bse1I ACTGG 1 cut(s) 83
BseBI CCWGG 2 cut(s) 258, 473
BseCI ATCGAT 1 cut(s) 777
BseDI CCNNGG 2 cut(s) 103, 256
BseGI GGATG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 660
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 5 cut(s) 549, 552, 725, 728, 731
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 522
BshFI GGCC 4 cut(s) 15, 25, 538, 761
BshVI ATCGAT 1 cut(s) 777
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 762
BslFI GGGAC 1 cut(s) 753
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 753
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 4 cut(s) 15, 25, 538, 761
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 6 cut(s) 110, 323, 444, 616, 628, 724
BspACI CCGC 1 cut(s) 214
BspANI GGCC 4 cut(s) 15, 25, 538, 761
BspCNI CTCAG 1 cut(s) 661
BspDI ATCGAT 1 cut(s) 777
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 3 cut(s) 153, 170, 470
BspMAI CTGCAG 2 cut(s) 444, 599
BspMI ACCTGC 1 cut(s) 602
BspPI GGATC 1 cut(s) 732
BspQI GCTCTTC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 761
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 761
BssECI CCNNGG 2 cut(s) 103, 256
BssMI GATC 6 cut(s) 110, 323, 444, 616, 628, 724
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 2 cut(s) 258, 473
Bst6I CTCTTC 3 cut(s) 177, 186, 424
BstAPI GCANNNNNTGC 1 cut(s) 594
BstC8I GCNNGC 3 cut(s) 27, 307, 540
BstDEI CTNAG 4 cut(s) 44, 202, 669, 784
BstF5I GGATG 1 cut(s) 433
BstKTI GATC 6 cut(s) 113, 326, 447, 619, 631, 727
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 6 cut(s) 110, 323, 444, 616, 628, 724
BstMWI GCNNNNNNNGC 4 cut(s) 12, 242, 459, 594
BstNI CCWGG 2 cut(s) 258, 473
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 256, 471
BstSFI CTRYAG 3 cut(s) 124, 440, 595
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 522
BstV2I GAAGAC 2 cut(s) 39, 758
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
Bsu15I ATCGAT 1 cut(s) 777
BsuRI GGCC 4 cut(s) 15, 25, 538, 761
BsuTUI ATCGAT 1 cut(s) 777
BtsCI GGATG 1 cut(s) 433
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 604
BveI ACCTGC 1 cut(s) 602
Cac8I GCNNGC 3 cut(s) 27, 307, 540
CciI TCATGA 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 761
Cfr13I GGNCC 2 cut(s) 68, 151
ClaI ATCGAT 1 cut(s) 777
CseI GACGC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 264, 735
CviAII CATG 6 cut(s) 221, 293, 301, 382, 465, 507
CviQI GTAC 2 cut(s) 264, 735
DdeI CTNAG 4 cut(s) 44, 202, 669, 784
DpnI GATC 6 cut(s) 112, 325, 446, 618, 630, 726
DpnII GATC 6 cut(s) 110, 323, 444, 616, 628, 724
EaeI YGGCCR 2 cut(s) 536, 759
Eam1104I CTCTTC 3 cut(s) 177, 186, 424
EarI CTCTTC 3 cut(s) 177, 186, 424
Eco130I CCWWGG 1 cut(s) 103
Eco32I GATATC 1 cut(s) 457
Eco47I GGWCC 2 cut(s) 68, 151
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 256, 471
EcoRV GATATC 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 6 cut(s) 224, 296, 304, 385, 468, 510
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FaqI GGGAC 1 cut(s) 753
FatI CATG 6 cut(s) 220, 292, 300, 381, 464, 506
Fnu4HI GCNGC 1 cut(s) 511
FokI GGATG 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 511
FspBI CTAG 2 cut(s) 9, 327
GluI GCNGC 1 cut(s) 511
HaeIII GGCC 4 cut(s) 15, 25, 538, 761
HapII CCGG 1 cut(s) 762
HgaI GACGC 1 cut(s) 185
Hin1II CATG 6 cut(s) 224, 296, 304, 385, 468, 510
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 3 cut(s) 159, 476, 671
HpaII CCGG 1 cut(s) 762
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 3 cut(s) 280, 382, 728
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 184, 725
HpyCH4IV ACGT 2 cut(s) 262, 756
HpyCH4V TGCA 8 cut(s) 6, 245, 315, 442, 510, 597, 610, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 242, 459, 594
HpyF3I CTNAG 4 cut(s) 44, 202, 669, 784
HpySE526I ACGT 2 cut(s) 262, 756
Hsp92II CATG 6 cut(s) 224, 296, 304, 385, 468, 510
Kzo9I GATC 6 cut(s) 110, 323, 444, 616, 628, 724
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 1 cut(s) 522
LweI GCATC 1 cut(s) 302
MaeI CTAG 2 cut(s) 9, 327
MaeII ACGT 2 cut(s) 262, 756
MalI GATC 6 cut(s) 112, 325, 446, 618, 630, 726
MboI GATC 6 cut(s) 110, 323, 444, 616, 628, 724
MboII GAAGA 8 cut(s) 44, 120, 194, 200, 203, 411, 758, 798
MfeI CAATTG 2 cut(s) 448, 636
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 344, 448, 484, 520, 636
MlyI GAGTC 1 cut(s) 680
MmeI TCCRAC 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 3 cut(s) 333, 347, 792
MslI CAYNNNNRTG 2 cut(s) 291, 310
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 762
MspR9I CCNGG 2 cut(s) 258, 473
MunI CAATTG 2 cut(s) 448, 636
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 2 cut(s) 258, 473
MwoI GCNNNNNNNGC 4 cut(s) 12, 242, 459, 594
NdeII GATC 6 cut(s) 110, 323, 444, 616, 628, 724
NlaIII CATG 6 cut(s) 224, 296, 304, 385, 468, 510
NlaIV GGNNCC 3 cut(s) 153, 170, 470
NspI RCATGY 1 cut(s) 296
PagI TCATGA 1 cut(s) 381
PciSI GCTCTTC 1 cut(s) 186
PctI GAATGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 159, 476
PkrI GCNGC 1 cut(s) 512
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
PshBI ATTAAT 1 cut(s) 347
Psp6I CCWGG 2 cut(s) 256, 471
PspGI CCWGG 2 cut(s) 256, 471
PspN4I GGNNCC 3 cut(s) 153, 170, 470
PspPI GGNCC 2 cut(s) 68, 151
PstI CTGCAG 2 cut(s) 444, 599
PsuI RGATCY 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 2 cut(s) 265, 736
RsaNI GTAC 2 cut(s) 264, 735
RseI CAYNNNNRTG 2 cut(s) 291, 310
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 3 cut(s) 333, 347, 792
SatI GCNGC 1 cut(s) 511
Sau3AI GATC 6 cut(s) 110, 323, 444, 616, 628, 724
Sau96I GGNCC 2 cut(s) 68, 151
SchI GAGTC 1 cut(s) 680
ScrFI CCNGG 2 cut(s) 258, 473
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 1 cut(s) 302
SfcI CTRYAG 3 cut(s) 124, 440, 595
SinI GGWCC 2 cut(s) 68, 151
SmiMI CAYNNNNRTG 2 cut(s) 291, 310
Sse9I AATT 5 cut(s) 344, 448, 484, 520, 636
SsiI CCGC 1 cut(s) 214
SspMI CTAG 2 cut(s) 9, 327
StyD4I CCNGG 2 cut(s) 256, 471
StyI CCWWGG 1 cut(s) 103
TaiI ACGT 2 cut(s) 265, 759
TaqI TCGA 1 cut(s) 777
TasI AATT 5 cut(s) 344, 448, 484, 520, 636
TfiI GAWTC 2 cut(s) 159, 476
Tru1I TTAA 3 cut(s) 333, 347, 792
Tru9I TTAA 3 cut(s) 333, 347, 792
TscAI CASTG 1 cut(s) 604
TseI GCWGC 1 cut(s) 510
TspDTI ATGAA 5 cut(s) 209, 370, 420, 468, 798
TspRI CASTG 1 cut(s) 604
VneI GTGCAC 1 cut(s) 4
VpaK11BI GGWCC 2 cut(s) 68, 151
VspI ATTAAT 1 cut(s) 347
XceI RCATGY 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 2 cut(s) 9, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.