Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007898

Physical Location & Seq

Genomic Coordinates Reverse (-)

21443550 .. 21446509

Gene Structure 2960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCAGATGCGGTAGAGAAGGGTGCGGACTGTATCGTGACGATAGGGGGCATCCAAAGCAACCACTGTCGTGCAACTGCAGTGGCTGCCAAGTATCTCAATCTTGACTGCTATCTCATTCTACGTACTTCAAGGGTTCTTGTGGACCAAGATCCTGGACTGACTGGCAATCTCCTGGTTGAGCGTTTAGTTGGAGCTCATATTGATTTAATTTCAAAAGAAGAGTATGCAAAAATCGGGAGTGGGGTTCTCACTAATCTCTTAAAGGAAAAACTACTAAAAGAAGGAAGAAGGCCATATGTTATTCCTGTTGGCGGATCAAATTCCCTCGGAACTTGGGGCTATATTGAAGCAATACGTGAGATTGAGGAGCAGCTTCAGAGTGGAATAGACAAAGTAAAGTTTGATGATATTGTGGTTGCTTGTGGCAGTGGGGGTACAGTTGCTGGTTTGTCATTGGCTTCTTGGCTCAGTTCGTCGAAGGCAAAAGTTAACGCATTTTCTGTCTGTGATGACCCTGATTACTTCTACGACTATGTTCAAGGCCTACTTGACGGGCTTGAGGCAGGTGTTGATTCACGTAATATTGTTGACATTCAGAATGCCAAGGGTCTGGGCTATGCAATTAACACCTCTGAGGAGATTAATTTTGTCAAGGAGATTGCTGCGACCACTGGGATTGTTCTTGATCCGGTTTACAGTGGCAAAGCTGCTTATGGAATGATGAAAGACATGGCTGAGAATCCAAAGAAGTGGGAAGGAAGAAAGGTCCTCTTCATACACACAGGCGGGCTACTTGGGTTGTACGACAAGTCGCTCCCCATTCCTCCGTTCAACACAATGGAAGTGGACGCAAACACCAACAGCTCCGACCCGGCTGCAAAGGCGGTGGCGATGGACTTCCTGACCAAAAAGGCCTACGCTCCTCCGTCTTGGGCATCCCATATCAAGTCCATCCTCCTCATACCTTCTCCCTCGGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009507 GO:0009536 GO:0009692 GO:0009693 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019447 GO:0019478 GO:0019752 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044273 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046416 GO:0046438 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

329

Amino Acids

35.25

Weight (kDa)

5.26

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	4 - 263	1.9e-26	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48420 AT1G48420 AT1G48420
fragaria_vesca	FvH4_5g18020 FvH4_5g18030 FvH4_5g18030 FvH4_5g18030
malus_domestica	MD06G1235700.v1.1 MD14G1242800.v1.1
prunus_persica	Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.5G240500_v2.0.a1 Prupe.8G055600_v2.0.a1
pyrus_communis	pycom14g20400
rosa_chinensis	RchiOBHm_Chr7g0177581
rosa_laevigata	RLG00000005524
rosa_roxburghii	Rroxscaffold_3G00275740
rosa_rugosa	Rorug06G0407700
rosa_samantha	Rh7AG006800 Rh7BG006800 Rh7CG007300 Rh7DG006800
rosa_wichuraiana	Rw7G000580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	557
Acc36I	ACCTGC	1 cut(s)	557
AciI	CCGC	5 cut(s)	11, 26, 315, 789, 887
AclWI	GGATC	3 cut(s)	146, 325, 683
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	3 cut(s)	127, 439, 806
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	5 cut(s)	132, 216, 350, 542, 835
AjnI	CCWGG	2 cut(s)	154, 174
AleI	CACNNNNGTG	1 cut(s)	69
AluBI	AGCT	4 cut(s)	197, 376, 710, 867
AluI	AGCT	4 cut(s)	197, 376, 710, 867
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	3 cut(s)	146, 325, 683
AlwNI	CAGNNNCTG	2 cut(s)	86, 446
AoxI	GGCC	3 cut(s)	293, 544, 915
ApeKI	GCWGC	5 cut(s)	86, 373, 665, 710, 878
ApoI	RAATTY	1 cut(s)	322
AseI	ATTAAT	1 cut(s)	645
AspS9I	GGNCC	2 cut(s)	145, 769
AsuC2I	CCSGG	1 cut(s)	875
AvaII	GGWCC	2 cut(s)	145, 769
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	5 cut(s)	73, 385, 652, 697, 865
BccI	CCATC	2 cut(s)	889, 962
BcgI	CGANNNNNNTGC	2 cut(s)	860, 894
BciT130I	CCWGG	2 cut(s)	156, 176
BcnI	CCSGG	1 cut(s)	875
BfmI	CTRYAG	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	557
BisI	GCNGC	5 cut(s)	87, 374, 666, 711, 879
BlsI	GCNGC	5 cut(s)	88, 375, 667, 712, 880
Bme1390I	CCNGG	3 cut(s)	156, 176, 875
Bme18I	GGWCC	2 cut(s)	145, 769
BmgT120I	GGNCC	2 cut(s)	145, 769
BmrFI	CCNGG	3 cut(s)	156, 176, 875
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	60, 947
BmuI	ACTGGG	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	875
BsaAI	YACGTR	3 cut(s)	125, 359, 581
BsaJI	CCNNGG	3 cut(s)	328, 606, 975
BsaWI	WCCGGW	1 cut(s)	691
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	169, 679
BseBI	CCWGG	2 cut(s)	156, 176
BseDI	CCNNGG	3 cut(s)	328, 606, 975
BseGI	GGATG	3 cut(s)	51, 938, 954
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	3 cut(s)	484, 627, 729
BseNI	ACTGG	2 cut(s)	169, 679
BseRI	GAGGAG	4 cut(s)	383, 653, 915, 950
BseXI	GCAGC	5 cut(s)	73, 385, 652, 697, 865
BshFI	GGCC	3 cut(s)	295, 546, 917
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	692, 875
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	3 cut(s)	295, 546, 917
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	151, 317, 688
BspACI	CCGC	5 cut(s)	11, 26, 315, 789, 887
BspANI	GGCC	3 cut(s)	295, 546, 917
BspCNI	CTCAG	3 cut(s)	483, 628, 730
BspMAI	CTGCAG	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	3 cut(s)	146, 325, 683
BsrI	ACTGG	2 cut(s)	169, 679
BssECI	CCNNGG	3 cut(s)	328, 606, 975
BssMI	GATC	3 cut(s)	151, 317, 688
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	156, 176
Bst4CI	ACNGT	4 cut(s)	32, 68, 442, 701
Bst6I	CTCTTC	2 cut(s)	216, 779
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstBAI	YACGTR	3 cut(s)	125, 359, 581
BstC8I	GCNNGC	1 cut(s)	791
BstDEI	CTNAG	3 cut(s)	470, 636, 738
BstF5I	GGATG	3 cut(s)	51, 938, 954
BstKTI	GATC	3 cut(s)	154, 320, 691
BstMBI	GATC	3 cut(s)	151, 317, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 86, 884
BstNI	CCWGG	2 cut(s)	156, 176
BstSCI	CCNGG	3 cut(s)	154, 174, 873
BstSFI	CTRYAG	1 cut(s)	78
BstSNI	TACGTA	1 cut(s)	125
BstV1I	GCAGC	5 cut(s)	73, 385, 652, 697, 865
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	3 cut(s)	155, 613, 753
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	295, 546, 917
BtgZI	GCGATG	1 cut(s)	908
BtsCI	GGATG	3 cut(s)	51, 938, 954
BtsI	GCAGTG	2 cut(s)	87, 436
BtsIMutI	CAGTG	5 cut(s)	64, 87, 436, 672, 706
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	1 cut(s)	791
CaiI	CAGNNNCTG	2 cut(s)	86, 446
Cfr13I	GGNCC	2 cut(s)	145, 769
CseI	GACGC	1 cut(s)	860
Csp6I	GTAC	3 cut(s)	126, 438, 805
CspCI	CAANNNNNGTGG	8 cut(s)	63, 98, 661, 696, 828, 863, 870, 905
CviAII	CATG	1 cut(s)	733
CviQI	GTAC	3 cut(s)	126, 438, 805
DdeI	CTNAG	3 cut(s)	470, 636, 738
DpnI	GATC	3 cut(s)	153, 319, 690
DpnII	GATC	3 cut(s)	151, 317, 688
Eam1104I	CTCTTC	2 cut(s)	216, 779
EarI	CTCTTC	2 cut(s)	216, 779
EciI	GGCGGA	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	197
Eco105I	TACGTA	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	606
Eco147I	AGGCCT	2 cut(s)	546, 917
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	145, 769
Eco53kI	GAGCTC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	769
EcoRII	CCWGG	2 cut(s)	154, 174
EcoT14I	CCWWGG	1 cut(s)	606
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	1 cut(s)	736
FalI	AAGNNNNNCTT	4 cut(s)	534, 566, 758, 790
FatI	CATG	1 cut(s)	732
FauI	CCCGC	1 cut(s)	782
FauNDI	CATATG	1 cut(s)	298
Fnu4HI	GCNGC	5 cut(s)	87, 374, 666, 711, 879
FokI	GGATG	3 cut(s)	38, 925, 941
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	5 cut(s)	87, 374, 666, 711, 879
GluI	GCNGC	5 cut(s)	87, 374, 666, 711, 879
HaeIII	GGCC	3 cut(s)	295, 546, 917
HapII	CCGG	2 cut(s)	692, 875
HgaI	GACGC	1 cut(s)	860
Hin1II	CATG	1 cut(s)	736
HincII	GTYRAC	2 cut(s)	493, 592
HindII	GTYRAC	2 cut(s)	493, 592
HinfI	GANTC	2 cut(s)	575, 742
HpaI	GTTAAC	1 cut(s)	493
HpaII	CCGG	2 cut(s)	692, 875
Hpy166II	GTNNAC	5 cut(s)	145, 493, 592, 697, 850
Hpy188I	TCNGA	6 cut(s)	332, 381, 600, 637, 871, 979
Hpy188III	TCNNGA	5 cut(s)	37, 104, 238, 686, 904
Hpy8I	GTNNAC	5 cut(s)	145, 493, 592, 697, 850
Hpy99I	CGWCG	1 cut(s)	481
HpyAV	CCTTC	6 cut(s)	13, 278, 285, 475, 752, 978
HpyCH4III	ACNGT	4 cut(s)	32, 68, 442, 701
HpyCH4IV	ACGT	3 cut(s)	124, 358, 580
HpyCH4V	TGCA	5 cut(s)	74, 80, 230, 623, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 86, 884
HpyF3I	CTNAG	3 cut(s)	470, 636, 738
HpySE526I	ACGT	3 cut(s)	124, 358, 580
Hsp92II	CATG	1 cut(s)	736
KspAI	GTTAAC	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	151, 317, 688
LmnI	GCTCC	5 cut(s)	194, 370, 822, 872, 928
Lsp1109I	GCAGC	5 cut(s)	73, 385, 652, 697, 865
LweI	GCATC	2 cut(s)	60, 947
MaeII	ACGT	3 cut(s)	124, 358, 580
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	3 cut(s)	153, 319, 690
MboI	GATC	3 cut(s)	151, 317, 688
MboII	GAAGA	4 cut(s)	233, 300, 766, 774
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	4 cut(s)	210, 322, 624, 646
MmeI	TCCRAC	2 cut(s)	172, 894
MseI	TTAA	5 cut(s)	209, 263, 492, 627, 645
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	2 cut(s)	692, 875
MspR9I	CCNGG	3 cut(s)	156, 176, 875
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	2 cut(s)	156, 176
MwoI	GCNNNNNNNGC	3 cut(s)	57, 86, 884
NciI	CCSGG	1 cut(s)	875
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	3 cut(s)	151, 317, 688
NlaIII	CATG	1 cut(s)	736
NmuCI	GTSAC	1 cut(s)	37
OliI	CACNNNNGTG	1 cut(s)	69
PaqCI	CACCTGC	1 cut(s)	557
PceI	AGGCCT	2 cut(s)	546, 917
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	575, 742
PfoI	TCCNGGA	1 cut(s)	154
PkrI	GCNGC	5 cut(s)	88, 375, 667, 712, 880
Ppu21I	YACGTR	3 cut(s)	125, 359, 581
PpuMI	RGGWCCY	1 cut(s)	769
PshBI	ATTAAT	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	769
Psp6I	CCWGG	2 cut(s)	154, 174
PspGI	CCWGG	2 cut(s)	154, 174
PspPI	GGNCC	2 cut(s)	145, 769
PspPPI	RGGWCCY	1 cut(s)	769
PstI	CTGCAG	1 cut(s)	82
PstNI	CAGNNNCTG	2 cut(s)	86, 446
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	3 cut(s)	127, 439, 806
RsaNI	GTAC	3 cut(s)	126, 438, 805
RseI	CAYNNNNRTG	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	199
SaqAI	TTAA	5 cut(s)	209, 263, 492, 627, 645
SatI	GCNGC	5 cut(s)	87, 374, 666, 711, 879
Sau3AI	GATC	3 cut(s)	151, 317, 688
Sau96I	GGNCC	2 cut(s)	145, 769
ScrFI	CCNGG	3 cut(s)	156, 176, 875
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	2 cut(s)	60, 947
SfcI	CTRYAG	1 cut(s)	78
SinI	GGWCC	2 cut(s)	145, 769
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SnaBI	TACGTA	1 cut(s)	125
Sse9I	AATT	4 cut(s)	210, 322, 624, 646
SseBI	AGGCCT	2 cut(s)	546, 917
SsiI	CCGC	5 cut(s)	11, 26, 315, 789, 887
SspI	AATATT	1 cut(s)	586
SstI	GAGCTC	1 cut(s)	199
StuI	AGGCCT	2 cut(s)	546, 917
StyD4I	CCNGG	3 cut(s)	154, 174, 873
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	4 cut(s)	32, 68, 442, 701
TaiI	ACGT	3 cut(s)	127, 361, 583
TaqI	TCGA	1 cut(s)	479
TasI	AATT	4 cut(s)	210, 322, 624, 646
TfiI	GAWTC	2 cut(s)	575, 742
Tru1I	TTAA	5 cut(s)	209, 263, 492, 627, 645
Tru9I	TTAA	5 cut(s)	209, 263, 492, 627, 645
TscAI	CASTG	5 cut(s)	71, 87, 436, 679, 706
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	5 cut(s)	86, 373, 665, 710, 878
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	740, 766
TspGWI	ACGGA	2 cut(s)	819, 918
TspRI	CASTG	5 cut(s)	71, 87, 436, 679, 706
VpaK11BI	GGWCC	2 cut(s)	145, 769
VspI	ATTAAT	1 cut(s)	645
XapI	RAATTY	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.