Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004660

Physical Location & Seq

Genomic Coordinates Forward (+)

4672 .. 8893

Gene Structure 4222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCAGCGGCGGCAGGGGTTGGAGTTGGAGGAGGTGATGTTTGGAGGGCACATGCGGCCATGGCAGCGGTTCAGCTCTTCAGCGGAGGATATCATGTAATTACCAAAGTAGCCCTCAATGTTGGCGTCAACCAAGTTGTATTCTGCGTATACCGGAACCTCCTTGCACTCGGCATCCTCGCTCCCATCGCCTATGTCCGTGAAAAACAGATTCGACAACCAATGAATAAACACCTCTTCATGTCCTTTTTCTTTCTTGGGTTAACTGGGATCGATCACAACCAGCTTTTGTTTCTTATTGGTCTTGGCTACACAAATCCAACTTATGCTGCGGCCATACAGCCTGCTATCCCAGTTTTCACGTTTATCCTTGCTGTTTTAATGGGTACAGAAAGAGTGAACTTGCTTAGAACTGAAGGGCAGGCCAAGGTTGGTGGTGCACTTTTATGTGTTTCTGGAGCCATATTAATGGTCTCATTTCGTGGACCTCCTTTGATTGGATATACAGAACCAGACTTTGCAGCACAGAGCCAAATAAGTGCCAAAGGTCAACCAGAGCCAGCTGGATGGTTGATATCTAGCTTTCTAGAGTTTGGGCTAGACCATTTTCATCTTGGAGTTTTATGCTTATTAGGGAACTGTATGTGCATGGCCGCTTTTTTAGCCCTTCAGGCTCCACTTTTGAGAAGATACCCTGCCAACCTGTCAGTTACAGCATATTCATTCTTCTTCGGCGCACTATTGATGGTGGTTACTACATTATTTATGACAAACGAGTCAACAGACTGGAGCTTGACACACTCTGAGCTTTTTGCTGTTATTTACGCTGGAACTGTTGCATCTGCCCTTAATTTTGGATTGCTGACGTGGAGCAATAAGATTTTGGGGCCTGCTTTGGTTGCTCTTTACAATCCACTTCAACCTGCAGCTTCGGCATTTTTGTCAAGAATTTTCCTTGGAAGCCCAGTTTATTTGGGAAGTGTCTTAGGAGGAATACTAATTATTACTGGTCTGTATGTGATAACTTGGTCGTCTTTGAAAGAAAGACAAGCAGCTTTGGAAGTCGTTATACCTCACGATGCTCGGGTCTCGGAACCTCTCATCCAGAAAGATACAACAATTAACAAGATACCATACCAGAGAGGACTGATTCTCTCAGGGCCTTCCAGTTCAGTACCAAAATCGGACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

398

Amino Acids

42.62

Weight (kDa)

8.75

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	20 - 158	3.6e-14	EamA-like transporter family
EamA	PF00892	205 - 342	2e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT4G19185 AT4G19185
fragaria_vesca	FvH4_2g37290 FvH4_2g37290
malus_domestica	MD08G1001200.v1.1
prunus_persica	Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1
pyrus_communis	pycom08g00050 pycom15g00010
rosa_chinensis	RchiOBHm_Chr6g0304411
rosa_laevigata	RLG00000010981
rosa_multiflora	Rmu_co8418059.1_g000001 Rmu_ssc0000218.1_g000048
rosa_roxburghii	Rroxscaffold_7G00163760
rosa_rugosa	Rorug06G0331300
rosa_samantha	Rh6AG444200 Rh6BG458200 Rh6CG457000 Rh6DG443700
rosa_wichuraiana	Rw6G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	775
Acc36I	ACCTGC	1 cut(s)	931
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	7 cut(s)	8, 11, 56, 68, 84, 332, 654
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	3 cut(s)	57, 333, 651
AcsI	RAATTY	1 cut(s)	948
AcuI	CTGAAG	3 cut(s)	64, 435, 653
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	388, 1176
AfiI	CCNNNNNNNGG	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	1188
AgsI	TTSAA	2 cut(s)	920, 1039
AjiI	CACGTC	1 cut(s)	867
AloI	GAACNNNNNNTCC	2 cut(s)	1086, 1118
AluBI	AGCT	8 cut(s)	76, 286, 563, 582, 792, 808, 929, 1055
AluI	AGCT	8 cut(s)	76, 286, 563, 582, 792, 808, 929, 1055
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	2 cut(s)	478, 1093
Alw44I	GTGCAC	1 cut(s)	438
AlwI	GGATC	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	1083
AoxI	GGCC	6 cut(s)	57, 333, 423, 651, 887, 1160
ApaLI	GTGCAC	1 cut(s)	438
ApeKI	GCWGC	6 cut(s)	5, 65, 329, 521, 926, 1052
ApoI	RAATTY	1 cut(s)	948
AseI	ATTAAT	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	737
AspS9I	GGNCC	3 cut(s)	485, 887, 1160
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	1083
AvaII	GGWCC	1 cut(s)	485
BaeGI	GKGCMC	2 cut(s)	52, 442
BarI	GAAGNNNNNNTAC	2 cut(s)	1053, 1085
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	6 cut(s)	17, 77, 316, 533, 938, 1064
BccI	CCATC	3 cut(s)	194, 561, 739
BcoDI	GTCTC	2 cut(s)	478, 1093
BfaI	CTAG	3 cut(s)	579, 587, 599
BfmI	CTRYAG	1 cut(s)	924
BfuAI	ACCTGC	1 cut(s)	931
BglI	GCCNNNNNGGC	1 cut(s)	671
Bme18I	GGWCC	1 cut(s)	485
BmeT110I	CYCGRG	1 cut(s)	1083
BmgBI	CACGTC	1 cut(s)	867
BmgT120I	GGNCC	3 cut(s)	485, 887, 1160
BmiI	GGNNCC	5 cut(s)	158, 460, 675, 888, 1095
BmrI	ACTGGG	3 cut(s)	276, 347, 959
BmsI	GCATC	3 cut(s)	183, 848, 1069
BmuI	ACTGGG	3 cut(s)	276, 347, 959
BpmI	CTGGAG	2 cut(s)	477, 808
Bsa29I	ATCGAT	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	2 cut(s)	478, 1093
BsaJI	CCNNGG	3 cut(s)	60, 426, 955
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	6 cut(s)	271, 353, 791, 965, 1012, 1167
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	60, 426, 955
BseGI	GGATG	3 cut(s)	174, 572, 1101
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	795, 1170
BseNI	ACTGG	6 cut(s)	271, 353, 791, 965, 1012, 1167
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	2 cut(s)	52, 442
BseXI	GCAGC	6 cut(s)	17, 77, 316, 533, 938, 1064
BshFI	GGCC	6 cut(s)	59, 335, 425, 653, 889, 1162
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	442
BsiHKCI	CYCGRG	1 cut(s)	1083
BsiSI	CCGG	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	478, 1093
BsnI	GGCC	6 cut(s)	59, 335, 425, 653, 889, 1162
Bso31I	GGTCTC	2 cut(s)	478, 1093
BsoBI	CYCGRG	1 cut(s)	1083
Bsp1286I	GDGCHC	2 cut(s)	52, 442
Bsp143I	GATC	2 cut(s)	270, 274
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	7 cut(s)	8, 11, 56, 68, 84, 332, 654
BspANI	GGCC	6 cut(s)	59, 335, 425, 653, 889, 1162
BspCNI	CTCAG	2 cut(s)	796, 1169
BspDI	ATCGAT	1 cut(s)	273
BspLI	GGNNCC	5 cut(s)	158, 460, 675, 888, 1095
BspMAI	CTGCAG	1 cut(s)	928
BspMI	ACCTGC	1 cut(s)	931
BspPI	GGATC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	83
BspTNI	GGTCTC	2 cut(s)	478, 1093
BsrI	ACTGG	6 cut(s)	271, 353, 791, 965, 1012, 1167
BssECI	CCNNGG	3 cut(s)	60, 426, 955
BssMI	GATC	2 cut(s)	270, 274
BssNAI	GTATAC	1 cut(s)	151
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	3 cut(s)	60, 426, 955
Bst1107I	GTATAC	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	641, 835
Bst6I	CTCTTC	2 cut(s)	83, 242
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	4 cut(s)	345, 423, 561, 891
BstDEI	CTNAG	4 cut(s)	407, 804, 985, 1156
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	3 cut(s)	174, 572, 1101
BstHHI	GCGC	1 cut(s)	737
BstKTI	GATC	2 cut(s)	273, 277
BstMAI	GTCTC	2 cut(s)	478, 1093
BstMBI	GATC	2 cut(s)	270, 274
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 56, 62, 65, 188, 662, 671, 899, 932
BstNSI	RCATGY	2 cut(s)	56, 1192
BstSFI	CTRYAG	1 cut(s)	924
BstSLI	GKGCMC	2 cut(s)	52, 442
BstV1I	GCAGC	6 cut(s)	17, 77, 316, 533, 938, 1064
BstXI	CCANNNNNNTGG	2 cut(s)	469, 567
BstZ17I	GTATAC	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	6 cut(s)	59, 335, 425, 653, 889, 1162
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	867
BtsCI	GGATG	3 cut(s)	174, 572, 1101
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	4 cut(s)	345, 423, 561, 891
CfoI	GCGC	1 cut(s)	737
Cfr13I	GGNCC	3 cut(s)	485, 887, 1160
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	387, 1175
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	6 cut(s)	53, 61, 95, 241, 649, 1189
CviQI	GTAC	2 cut(s)	387, 1175
DdeI	CTNAG	4 cut(s)	407, 804, 985, 1156
DpnI	GATC	2 cut(s)	272, 276
DpnII	GATC	2 cut(s)	270, 274
DrdI	GACNNNNNNGTC	1 cut(s)	775
DseDI	GACNNNNNNGTC	1 cut(s)	775
EaeI	YGGCCR	3 cut(s)	57, 333, 651
Eam1104I	CTCTTC	2 cut(s)	83, 242
EarI	CTCTTC	2 cut(s)	83, 242
Eco130I	CCWWGG	3 cut(s)	60, 426, 955
Eco31I	GGTCTC	2 cut(s)	478, 1093
Eco32I	GATATC	2 cut(s)	92, 576
Eco47I	GGWCC	1 cut(s)	485
Eco57I	CTGAAG	3 cut(s)	64, 435, 653
Eco88I	CYCGRG	1 cut(s)	1083
EcoO109I	RGGNCCY	2 cut(s)	887, 1160
EcoRV	GATATC	2 cut(s)	92, 576
EcoT14I	CCWWGG	3 cut(s)	60, 426, 955
ErhI	CCWWGG	3 cut(s)	60, 426, 955
FaeI	CATG	6 cut(s)	56, 64, 98, 244, 652, 1192
FatI	CATG	6 cut(s)	52, 60, 94, 240, 648, 1188
FblI	GTMKAC	1 cut(s)	150
FokI	GGATG	3 cut(s)	161, 579, 1088
FspBI	CTAG	3 cut(s)	579, 587, 599
GlaI	GCGC	1 cut(s)	736
GsuI	CTGGAG	2 cut(s)	477, 808
HaeIII	GGCC	6 cut(s)	59, 335, 425, 653, 889, 1162
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	737
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	6 cut(s)	56, 64, 98, 244, 652, 1192
Hin6I	GCGC	1 cut(s)	735
HinP1I	GCGC	1 cut(s)	735
HincII	GTYRAC	4 cut(s)	130, 264, 551, 780
HindII	GTYRAC	4 cut(s)	130, 264, 551, 780
HinfI	GANTC	3 cut(s)	211, 776, 1150
HpaI	GTTAAC	1 cut(s)	264
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	8 cut(s)	130, 151, 264, 400, 440, 485, 551, 780
Hpy188I	TCNGA	3 cut(s)	805, 1093, 1186
Hpy188III	TCNNGA	5 cut(s)	456, 587, 945, 1076, 1105
Hpy8I	GTNNAC	8 cut(s)	130, 151, 264, 400, 440, 485, 551, 780
HpyAV	CCTTC	3 cut(s)	410, 677, 1173
HpyCH4III	ACNGT	2 cut(s)	641, 835
HpyCH4IV	ACGT	2 cut(s)	362, 866
HpyCH4V	TGCA	6 cut(s)	167, 440, 521, 648, 839, 926
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 56, 62, 65, 188, 662, 671, 899, 932
HpyF3I	CTNAG	4 cut(s)	407, 804, 985, 1156
HpySE526I	ACGT	2 cut(s)	362, 866
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	6 cut(s)	56, 64, 98, 244, 652, 1192
HspAI	GCGC	1 cut(s)	735
KspAI	GTTAAC	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	270, 274
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	5 cut(s)	187, 458, 679, 789, 870
Lsp1109I	GCAGC	6 cut(s)	17, 77, 316, 533, 938, 1064
LweI	GCATC	3 cut(s)	183, 848, 1069
MaeI	CTAG	3 cut(s)	579, 587, 599
MaeII	ACGT	2 cut(s)	362, 866
MaeIII	GTNAC	2 cut(s)	709, 751
MalI	GATC	2 cut(s)	272, 276
MboI	GATC	2 cut(s)	270, 274
MboII	GAAGA	5 cut(s)	70, 229, 699, 718, 721
MhlI	GDGCHC	2 cut(s)	52, 442
MluCI	AATT	5 cut(s)	99, 850, 948, 999, 1119
MlyI	GAGTC	1 cut(s)	785
MmeI	TCCRAC	2 cut(s)	7, 344
MseI	TTAA	5 cut(s)	263, 380, 467, 849, 1122
MslI	CAYNNNNRTG	2 cut(s)	445, 467
MspA1I	CMGCKG	4 cut(s)	8, 68, 84, 563
MspI	CCGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	9 cut(s)	11, 56, 62, 65, 188, 662, 671, 899, 932
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	270, 274
NlaIII	CATG	6 cut(s)	56, 64, 98, 244, 652, 1192
NlaIV	GGNNCC	5 cut(s)	158, 460, 675, 888, 1095
NmeAIII	GCCGAG	1 cut(s)	150
NspI	RCATGY	2 cut(s)	56, 1192
PciI	ACATGT	1 cut(s)	1188
PciSI	GCTCTTC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	211, 1150
PleI	GAGTC	1 cut(s)	784
PpsI	GAGTC	1 cut(s)	784
PscI	ACATGT	1 cut(s)	1188
PshBI	ATTAAT	1 cut(s)	467
PspN4I	GGNNCC	5 cut(s)	158, 460, 675, 888, 1095
PspPI	GGNCC	3 cut(s)	485, 887, 1160
PstI	CTGCAG	1 cut(s)	928
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	2 cut(s)	388, 1176
RsaNI	GTAC	2 cut(s)	387, 1175
RseI	CAYNNNNRTG	2 cut(s)	445, 467
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	5 cut(s)	263, 380, 467, 849, 1122
Sau3AI	GATC	2 cut(s)	270, 274
Sau96I	GGNCC	3 cut(s)	485, 887, 1160
SchI	GAGTC	1 cut(s)	785
SduI	GDGCHC	2 cut(s)	52, 442
SfaNI	GCATC	3 cut(s)	183, 848, 1069
SfcI	CTRYAG	1 cut(s)	924
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	2 cut(s)	445, 467
Sse9I	AATT	5 cut(s)	99, 850, 948, 999, 1119
SsiI	CCGC	7 cut(s)	8, 11, 56, 68, 84, 332, 654
SspMI	CTAG	3 cut(s)	579, 587, 599
StyI	CCWWGG	3 cut(s)	60, 426, 955
TaaI	ACNGT	2 cut(s)	641, 835
TaiI	ACGT	2 cut(s)	365, 869
TaqI	TCGA	2 cut(s)	214, 273
TasI	AATT	5 cut(s)	99, 850, 948, 999, 1119
TauI	GCSGC	5 cut(s)	11, 14, 59, 335, 656
TfiI	GAWTC	2 cut(s)	211, 1150
Tru1I	TTAA	5 cut(s)	263, 380, 467, 849, 1122
Tru9I	TTAA	5 cut(s)	263, 380, 467, 849, 1122
TseI	GCWGC	6 cut(s)	5, 65, 329, 521, 926, 1052
TspDTI	ATGAA	4 cut(s)	229, 239, 599, 711
TspGWI	ACGGA	1 cut(s)	188
VneI	GTGCAC	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	485
VspI	ATTAAT	1 cut(s)	467
XapI	RAATTY	1 cut(s)	948
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	2 cut(s)	56, 1192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	3 cut(s)	579, 587, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.