Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007648

Physical Location & Seq

Genomic Coordinates Reverse (-)

1444497 .. 1445854

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTTTTATGTGAAGCTGCACTCAGTTGCGAAAGATTTTGATATCGAAAACTCTGTGGACATGTTTCGCCTCTGGAGCACTTCTCATCAGCAAGAGAACGATCCCTTGAACCATGACGCTAAGATCAGTGAGCTCAAGGCTGCGATTGGACCGCTATCTGGACGCAGTTTGCAGTTCTGCACTGATGCATGCTTCAGGCGGTACTCGGAGGCGCGAAATTGGAACCTTGACAAGGCGAAGAAAATGTTGGAGGAAACACTCAAATGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGGCACGAAGTTGCATGTGAAGGCGAGACTGGGAAAGTTTACAGAGCAAGTATTCGCGATCGTAGTGGGAGGACTGTTCTTATACTGAGACCGGGAATGCAGAACACGGTATCAATAGACAATCAGATGCGGCATCTGGTGTATCTGATTGAGAATGCTGTGTTCAACCTTCCGGAGGGCCAAGAACAAATGGCGTGGCTGATAGACTTCACAGGGTGGACGCTAAGTACTACCGTGCCTGTGAAATCGGCTCGAGACACCATCAACATTTTACAGAACCACTACCCTGAGAGACTAGCTGTAGCATTTCTCTACAATCCCCCACGCATTTTCGAAGCATTTTGGAAGATTGTCAAGTATTTCTTGGACAACAAGACATTCCACAAGGTTAAGTTCGTTTACCCGAAGAACAAAGATAGCGTGGAGCTTATGAAACAATATTTCGACGAGGAAAATCTCCCTATTGAGTTTGGAGGACCAGCCATACTAAACTATGATCACGAGGAATTCTCGAAACTAATGAATCAAGATGATGTGAAATCAGCTGCATTTTGGTGCCCCGATGACAAACTACCACATTGGGCTAATGAGCGTTCTGGAGCCGAGGTGGCTCCAGAGCCAGTGAGCCTTACACCGGCAGCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

315

Amino Acids

36.51

Weight (kDa)

6.03

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	111 - 258	1.7e-36	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	140 - 267	1.8e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75170 AT1G75170 AT1G75170
fragaria_vesca	FvH4_2g39850 FvH4_2g39850
malus_domestica	MD08G1032100.v1.1 MD15G1028100.v1.1
prunus_persica	Prupe.1G379800_v2.0.a1 Prupe.1G379800_v2.0.a1 Prupe.1G379800_v2.0.a1
pyrus_communis	pycom08g02540 pycom15g02450
rosa_chinensis	RchiOBHm_Chr6g0300991
rosa_laevigata	RLG00000011287 RLG00000034667
rosa_multiflora	Rmu_co8375471.1_g000001 Rmu_sc0011701.1_g000029
rosa_roxburghii	Rroxscaffold_7G00167280
rosa_rugosa	Rorug06G0299800 Rorug06G0299800
rosa_samantha	Rh6AG413700 Rh6BG420600 Rh6CG428200 Rh6DG413600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	852
AccII	CGCG	2 cut(s)	214, 354
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	4 cut(s)	152, 199, 295, 427
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	1 cut(s)	178
AdeI	CACNNNGTG	1 cut(s)	513
AfaI	GTAC	2 cut(s)	203, 526
AfiI	CCNNNNNNNGG	4 cut(s)	158, 232, 472, 931
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	109, 463
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	6 cut(s)	16, 133, 596, 724, 842, 942
AluI	AGCT	6 cut(s)	16, 133, 596, 724, 842, 942
Alw21I	GWGCWC	2 cut(s)	80, 135
Alw26I	GTCTC	4 cut(s)	317, 379, 546, 583
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	549
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	4 cut(s)	16, 140, 842, 935
ApoI	RAATTY	1 cut(s)	803
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	3 cut(s)	149, 475, 773
AsuC2I	CCSGG	1 cut(s)	390
AsuII	TTCGAA	1 cut(s)	630
AvaI	CYCGRG	1 cut(s)	549
AvaII	GGWCC	2 cut(s)	149, 773
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	857
BanI	GGYRCC	1 cut(s)	852
BanII	GRGCYC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	797
Bbv12I	GWGCWC	2 cut(s)	80, 135
BbvI	GCAGC	3 cut(s)	3, 127, 829
BccI	CCATC	1 cut(s)	566
BclI	TGATCA	1 cut(s)	793
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	4 cut(s)	317, 379, 546, 583
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	597
BglI	GCCNNNNNGGC	1 cut(s)	905
BisI	GCNGC	5 cut(s)	17, 141, 428, 843, 936
BlsI	GCNGC	5 cut(s)	18, 142, 429, 844, 937
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	2 cut(s)	149, 773
BmeT110I	CYCGRG	1 cut(s)	549
BmgT120I	GGNCC	3 cut(s)	149, 475, 773
BmiI	GGNNCC	4 cut(s)	224, 854, 898, 909
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	3 cut(s)	175, 414, 439
BmuI	ACTGGG	1 cut(s)	336
BplI	GAGNNNNNCTC	4 cut(s)	67, 99, 791, 823
BpmI	CTGGAG	3 cut(s)	94, 894, 915
Bpu14I	TTCGAA	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	900
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 232, 472, 931
Bse118I	RCCGGY	1 cut(s)	931
Bse1I	ACTGG	2 cut(s)	331, 917
Bse21I	CCTNAGG	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	469
BseDI	CCNNGG	1 cut(s)	900
BseLI	CCNNNNNNNGG	4 cut(s)	158, 232, 472, 931
BseMII	CTCAG	4 cut(s)	36, 276, 374, 576
BseNI	ACTGG	2 cut(s)	331, 917
BseSI	GKGCMC	1 cut(s)	857
BseXI	GCAGC	3 cut(s)	3, 127, 829
BsgI	GTGCAG	1 cut(s)	163
Bsh1236I	CGCG	2 cut(s)	214, 354
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	477
BshNI	GGYRCC	1 cut(s)	852
BsiEI	CGRYCG	1 cut(s)	358
BsiHKAI	GWGCWC	2 cut(s)	80, 135
BsiHKCI	CYCGRG	1 cut(s)	549
BsiSI	CCGG	3 cut(s)	389, 470, 932
BslI	CCNNNNNNNGG	4 cut(s)	158, 232, 472, 931
BsmAI	GTCTC	4 cut(s)	317, 379, 546, 583
BsmI	GAATGC	2 cut(s)	399, 457
BsnI	GGCC	1 cut(s)	477
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	549
Bsp119I	TTCGAA	1 cut(s)	630
Bsp1286I	GDGCHC	3 cut(s)	80, 135, 857
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	100, 123, 355, 793
Bsp68I	TCGCGA	1 cut(s)	354
BspACI	CCGC	4 cut(s)	152, 199, 295, 427
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	4 cut(s)	35, 277, 375, 577
BspEI	TCCGGA	1 cut(s)	469
BspFNI	CGCG	2 cut(s)	214, 354
BspLI	GGNNCC	4 cut(s)	224, 854, 898, 909
BspPI	GGATC	1 cut(s)	95
BspT104I	TTCGAA	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	852
BspTNI	GGTCTC	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	931
BsrI	ACTGG	2 cut(s)	331, 917
BssAI	RCCGGY	1 cut(s)	931
BssECI	CCNNGG	1 cut(s)	900
BssMI	GATC	4 cut(s)	100, 123, 355, 793
BssSI	CACGAG	1 cut(s)	797
Bst2BI	CACGAG	1 cut(s)	797
Bst4CI	ACNGT	3 cut(s)	373, 406, 532
BstBI	TTCGAA	1 cut(s)	630
BstC8I	GCNNGC	3 cut(s)	190, 299, 940
BstDEI	CTNAG	6 cut(s)	22, 120, 285, 383, 521, 585
BstENI	CCTNNNNNAGG	2 cut(s)	230, 470
BstFNI	CGCG	2 cut(s)	214, 354
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	4 cut(s)	103, 126, 358, 796
BstMAI	GTCTC	4 cut(s)	317, 379, 546, 583
BstMBI	GATC	4 cut(s)	100, 123, 355, 793
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 905
BstNSI	RCATGY	3 cut(s)	64, 192, 315
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	597
BstSLI	GKGCMC	1 cut(s)	857
BstUI	CGCG	2 cut(s)	214, 354
BstV1I	GCAGC	3 cut(s)	3, 127, 829
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	477
BtsIMutI	CAGTG	3 cut(s)	133, 180, 924
BtuMI	TCGCGA	1 cut(s)	354
Cac8I	GCNNGC	3 cut(s)	190, 299, 940
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	931
Cfr13I	GGNCC	3 cut(s)	149, 475, 773
CseI	GACGC	3 cut(s)	125, 171, 526
Csp6I	GTAC	2 cut(s)	202, 525
CspCI	CAANNNNNGTGG	2 cut(s)	473, 508
CviAII	CATG	4 cut(s)	61, 113, 189, 312
CviQI	GTAC	2 cut(s)	202, 525
DdeI	CTNAG	6 cut(s)	22, 120, 285, 383, 521, 585
DpnI	GATC	4 cut(s)	102, 125, 357, 795
DpnII	GATC	4 cut(s)	100, 123, 355, 793
DraIII	CACNNNGTG	1 cut(s)	513
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	379
Eco32I	GATATC	1 cut(s)	43
Eco47I	GGWCC	2 cut(s)	149, 773
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	178
Eco81I	CCTNAGG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	549
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	2 cut(s)	230, 470
EcoRI	GAATTC	1 cut(s)	803
EcoRV	GATATC	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	4 cut(s)	64, 116, 192, 315
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FatI	CATG	4 cut(s)	60, 112, 188, 311
FbaI	TGATCA	1 cut(s)	793
Fnu4HI	GCNGC	5 cut(s)	17, 141, 428, 843, 936
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	5 cut(s)	17, 141, 428, 843, 936
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	5 cut(s)	17, 141, 428, 843, 936
GsuI	CTGGAG	3 cut(s)	94, 894, 915
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	3 cut(s)	389, 470, 932
HgaI	GACGC	3 cut(s)	125, 171, 526
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	4 cut(s)	64, 116, 192, 315
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	820
HpaII	CCGG	3 cut(s)	389, 470, 932
Hpy166II	GTNNAC	5 cut(s)	58, 273, 337, 516, 697
Hpy188I	TCNGA	3 cut(s)	208, 423, 444
Hpy8I	GTNNAC	5 cut(s)	58, 273, 337, 516, 697
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	2 cut(s)	311, 476
HpyCH4III	ACNGT	3 cut(s)	373, 406, 532
HpyCH4V	TGCA	7 cut(s)	19, 172, 180, 188, 311, 397, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 905
HpyF3I	CTNAG	6 cut(s)	22, 120, 285, 383, 521, 585
Hsp92II	CATG	4 cut(s)	64, 116, 192, 315
HspAI	GCGC	1 cut(s)	212
Kpn2I	TCCGGA	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	793
Kzo9I	GATC	4 cut(s)	100, 123, 355, 793
LmnI	GCTCC	4 cut(s)	75, 721, 896, 913
Lsp1109I	GCAGC	3 cut(s)	3, 127, 829
LweI	GCATC	3 cut(s)	175, 414, 439
MaeI	CTAG	1 cut(s)	593
MalI	GATC	4 cut(s)	102, 125, 357, 795
MboI	GATC	4 cut(s)	100, 123, 355, 793
MboII	GAAGA	3 cut(s)	250, 655, 715
MhlI	GDGCHC	3 cut(s)	80, 135, 857
MluCI	AATT	2 cut(s)	217, 803
MmeI	TCCRAC	1 cut(s)	228
Mph1103I	ATGCAT	1 cut(s)	190
MroI	TCCGGA	1 cut(s)	469
MseI	TTAA	1 cut(s)	687
MslI	CAYNNNNRTG	2 cut(s)	262, 850
MspA1I	CMGCKG	3 cut(s)	297, 842, 942
MspI	CCGG	3 cut(s)	389, 470, 932
MspR9I	CCNGG	1 cut(s)	390
Mva1269I	GAATGC	2 cut(s)	399, 457
MvnI	CGCG	2 cut(s)	214, 354
MwoI	GCNNNNNNNGC	2 cut(s)	75, 905
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	4 cut(s)	100, 123, 355, 793
NlaIII	CATG	4 cut(s)	64, 116, 192, 315
NlaIV	GGNNCC	4 cut(s)	224, 854, 898, 909
NmeAIII	GCCGAG	1 cut(s)	925
NruI	TCGCGA	1 cut(s)	354
NsiI	ATGCAT	1 cut(s)	190
NspI	RCATGY	3 cut(s)	64, 192, 315
NspV	TTCGAA	1 cut(s)	630
PaeI	GCATGC	1 cut(s)	192
PaeR7I	CTCGAG	1 cut(s)	549
PciI	ACATGT	1 cut(s)	60
PctI	GAATGC	2 cut(s)	399, 457
PfeI	GAWTC	1 cut(s)	820
PkrI	GCNGC	5 cut(s)	18, 142, 429, 844, 937
Ple19I	CGATCG	1 cut(s)	358
PscI	ACATGT	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	4 cut(s)	224, 854, 898, 909
PspPI	GGNCC	3 cut(s)	149, 475, 773
PvuI	CGATCG	1 cut(s)	358
PvuII	CAGCTG	2 cut(s)	842, 942
RruI	TCGCGA	1 cut(s)	354
RsaI	GTAC	2 cut(s)	203, 526
RsaNI	GTAC	2 cut(s)	202, 525
RseI	CAYNNNNRTG	2 cut(s)	262, 850
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	5 cut(s)	17, 141, 428, 843, 936
Sau3AI	GATC	4 cut(s)	100, 123, 355, 793
Sau96I	GGNCC	3 cut(s)	149, 475, 773
ScaI	AGTACT	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	3 cut(s)	80, 135, 857
SfaNI	GCATC	3 cut(s)	175, 414, 439
SfcI	CTRYAG	1 cut(s)	597
Sfr274I	CTCGAG	1 cut(s)	549
SfuI	TTCGAA	1 cut(s)	630
SinI	GGWCC	2 cut(s)	149, 773
SlaI	CTCGAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	2 cut(s)	262, 850
SmlI	CTYRAG	2 cut(s)	134, 549
SmoI	CTYRAG	2 cut(s)	134, 549
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	2 cut(s)	217, 803
SsiI	CCGC	4 cut(s)	152, 199, 295, 427
SspI	AATATT	1 cut(s)	737
SspMI	CTAG	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	3 cut(s)	373, 406, 532
TaqI	TCGA	5 cut(s)	45, 550, 630, 741, 809
TasI	AATT	2 cut(s)	217, 803
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	820
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	3 cut(s)	133, 187, 924
TseI	GCWGC	4 cut(s)	16, 140, 842, 935
TspDTI	ATGAA	2 cut(s)	743, 833
TspRI	CASTG	3 cut(s)	133, 187, 924
VpaK11BI	GGWCC	2 cut(s)	149, 773
XagI	CCTNNNNNAGG	2 cut(s)	230, 470
XapI	RAATTY	1 cut(s)	803
XceI	RCATGY	3 cut(s)	64, 192, 315
XhoI	CTCGAG	1 cut(s)	549
XspI	CTAG	1 cut(s)	593
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.