Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007321

Physical Location & Seq

Genomic Coordinates Reverse (-)

5610636 .. 5613291

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGTTATAGTGAGCTCCTGCGGTTTGAAATGCTCAACAAACGGACTACTGCATGGCGGGCTGGAGAACATAGACGAAAATGGCGGTATAGTGAGCGGAACAGTGGGGTCGTCTGCGCCGCCGCCAGAAACTCCAACGGAGTCGATGGAGTTTCTGGCCAGATCGTGGAGTCTCTCAGCCATGGAGATCTCCAAAGCTCTTTCGCACACACGTGTGAACGTTGCTTCCAAGACCCTTGACAAGTCAGCGTTCAGTTCTGATGATGGTGTTGAATCACACGACAGAAGTTCCATGCGTTTAATGGAATGTCAGTTACCCAGTGGAGTTAGCCCTCCAGTTTCGCCAAGAGACAGTGAAGAGATGAAGCTATACAAGAGCATTTTGCGAGGGAAAACAATGGGCAGATGGTTAAAAGATCAGAAGGAGAGGAAGAAGCATGAAATCCGAACCCAAAATGCGCAGTTGCACGCTGCTGTTTCTGTGGCTGGGGTTGCTGCTGCTGTAGCATCAATTGCAGCTTCAACTGTATTTCCTGAAACATCAGCTGCCCACGAGAAAACACCAGTATCCGAATTGAGGATGGAAACATCAGCTGCGCTAGCATCCGCAGCAGCTCTAGTCGCTTCGCGTTGCATTGAGATTGCGGAGGAAATGGGAGCCGAGCATGATCATATTGTATCAGTTGTCAGTTCTGCAGTCAATGCAAGGACTAATGGAGATATCATGACCTTAACTGCAGGAGCAGCTACAGTTTATGATCAATGCACAGCTTTACGCGGAGCTGCCACACTTAAAGTGAGGCTGCAAAAGGAGTACGGTGGCACAACTGTTGCTCTGGCCGAGGAGAGATGTGAAGGCAACCAATCAAATGCAGCATTGCACTTTGTCTCAAATGGAGGGGAGCTTCTTAAACGTACGAGGAAAGGTGCTCTTCACTGGAAGAGGGTTTCTTTCAATACTAACTCAAATGGGCAGGTTGTAGCCAAAATGAAAAGCAAGCATATCGCGGGAACATTTACGAAAAAAAAGAAATGTGTGGTCTCTGGAGTCTACTGTGACATCCCAGCTTGGCCCGGCAGGGAAAGAGAAGACGGCAGCAAACCAAGGGCATACTTTGGGATAAAAACAGCTGAAAGGACAATAGAATTTGAATGCAGAAGTCAAGGTGACAAACATATGTGGACTGAAGGGATCCGTCATATGTTGAATTTCATGCCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

408

Amino Acids

43.84

Weight (kDa)

8.87

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	42 - 276	1.6e-70	Auxin canalisation
PH_2	PF08458	301 - 403	1.3e-42	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32780 AT4G32780 AT4G32780
fragaria_vesca	FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720 FvH4_2g35720
malus_domestica	MD15G1094600.v1.1
prunus_persica	Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1 Prupe.1G449700_v2.0.a1
pyrus_communis	pycom15g08740
rosa_chinensis	RchiOBHm_Chr6g0306061
rosa_laevigata	RLG00000010827
rosa_multiflora	Rmu_sc0023505.1_g000002
rosa_rugosa	Rorug06G0346800
rosa_samantha	Rh6AG458800 Rh6BG442000 Rh6CG473300 Rh6DG459600
rosa_wichuraiana	Rw6G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	459
Acc36I	ACCTGC	1 cut(s)	964
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccBSI	CCGCTC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	1050
AccII	CGCG	3 cut(s)	628, 777, 1007
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	2 cut(s)	1186, 1199
AcoI	YGGCCR	2 cut(s)	156, 837
AcsI	RAATTY	2 cut(s)	1145, 1207
AcuI	CTGAAG	1 cut(s)	1206
AcvI	CACGTG	1 cut(s)	212
AfaI	GTAC	2 cut(s)	815, 916
AfiI	CCNNNNNNNGG	2 cut(s)	165, 576
AflIII	ACRYGT	2 cut(s)	209, 211
AgsI	TTSAA	6 cut(s)	28, 272, 522, 955, 1151, 1207
AleI	CACNNNNGTG	2 cut(s)	210, 212
AloI	GAACNNNNNNTCC	2 cut(s)	209, 241
Alw21I	GWGCWC	2 cut(s)	17, 931
Alw26I	GTCTC	4 cut(s)	176, 342, 892, 1045
AlwI	GGATC	2 cut(s)	1186, 1199
AoxI	GGCC	3 cut(s)	156, 837, 1070
ApoI	RAATTY	2 cut(s)	1145, 1207
AspLEI	GCGC	3 cut(s)	118, 460, 598
AspS9I	GGNCC	1 cut(s)	1071
AsuC2I	CCSGG	1 cut(s)	1074
AsuHPI	GGTGA	1 cut(s)	1178
AsuNHI	GCTAGC	1 cut(s)	598
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BalI	TGGCCA	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	1191
BanII	GRGCYC	1 cut(s)	17
BauI	CACGAG	1 cut(s)	551
BbrPI	CACGTG	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	1095
Bbv12I	GWGCWC	2 cut(s)	17, 931
BccI	CCATC	4 cut(s)	139, 257, 399, 574
BceAI	ACGGC	1 cut(s)	1108
BcgI	CGANNNNNNTGC	2 cut(s)	985, 1019
BciVI	GTATCC	1 cut(s)	577
BclI	TGATCA	2 cut(s)	667, 757
BcnI	CCSGG	1 cut(s)	1074
BcoDI	GTCTC	4 cut(s)	176, 342, 892, 1045
BfaI	CTAG	2 cut(s)	599, 617
BfmI	CTRYAG	4 cut(s)	501, 693, 735, 747
BfuAI	ACCTGC	1 cut(s)	964
BfuI	GTATCC	1 cut(s)	577
BglII	AGATCT	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	1074
BmgT120I	GGNCC	1 cut(s)	1071
BmiI	GGNNCC	2 cut(s)	658, 1193
BmrFI	CCNGG	1 cut(s)	1074
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	2 cut(s)	515, 611
BmtI	GCTAGC	1 cut(s)	602
BmuI	ACTGGG	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	1095
BpmI	CTGGAG	3 cut(s)	83, 318, 1065
BpuMI	CCSGG	1 cut(s)	1074
BsaAI	YACGTR	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	1045
BsaJI	CCNNGG	3 cut(s)	180, 840, 1103
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 576
Bse1I	ACTGG	4 cut(s)	318, 335, 563, 941
Bse3DI	GCAATG	1 cut(s)	875
BseDI	CCNNGG	3 cut(s)	180, 840, 1103
BseGI	GGATG	3 cut(s)	585, 602, 1059
BseLI	CCNNNNNNNGG	2 cut(s)	165, 576
BseMI	GCAATG	1 cut(s)	875
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	4 cut(s)	318, 335, 563, 941
BseRI	GAGGAG	1 cut(s)	857
BseYI	CCCAGC	2 cut(s)	485, 1063
Bsh1236I	CGCG	3 cut(s)	628, 777, 1007
BshFI	GGCC	3 cut(s)	158, 839, 1072
BsiHKAI	GWGCWC	2 cut(s)	17, 931
BsiSI	CCGG	1 cut(s)	1074
BsiWI	CGTACG	1 cut(s)	914
BslI	CCNNNNNNNGG	2 cut(s)	165, 576
BsmAI	GTCTC	4 cut(s)	176, 342, 892, 1045
BsmI	GAATGC	1 cut(s)	1157
BsnI	GGCC	3 cut(s)	158, 839, 1072
Bso31I	GGTCTC	1 cut(s)	1045
Bsp1286I	GDGCHC	2 cut(s)	17, 931
Bsp143I	GATC	6 cut(s)	161, 186, 415, 667, 757, 1191
Bsp19I	CCATGG	1 cut(s)	180
BspANI	GGCC	3 cut(s)	158, 839, 1072
BspCNI	CTCAG	1 cut(s)	188
BspFNI	CGCG	3 cut(s)	628, 777, 1007
BspHI	TCATGA	1 cut(s)	723
BspLI	GGNNCC	2 cut(s)	658, 1193
BspMAI	CTGCAG	2 cut(s)	697, 739
BspMI	ACCTGC	1 cut(s)	964
BspOI	GCTAGC	1 cut(s)	602
BspPI	GGATC	2 cut(s)	1186, 1199
BspQI	GCTCTTC	1 cut(s)	936
BspTNI	GGTCTC	1 cut(s)	1045
BsrBI	CCGCTC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	875
BsrI	ACTGG	4 cut(s)	318, 335, 563, 941
BssECI	CCNNGG	3 cut(s)	180, 840, 1103
BssMI	GATC	6 cut(s)	161, 186, 415, 667, 757, 1191
BssSI	CACGAG	1 cut(s)	551
BssT1I	CCWWGG	2 cut(s)	180, 1103
Bst2BI	CACGAG	1 cut(s)	551
Bst4CI	ACNGT	7 cut(s)	103, 353, 526, 751, 818, 829, 1055
Bst6I	CTCTTC	3 cut(s)	351, 935, 936
BstAPI	GCANNNNNTGC	2 cut(s)	512, 701
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	4 cut(s)	59, 468, 600, 998
BstDEI	CTNAG	1 cut(s)	175
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	585, 602, 1059
BstFNI	CGCG	3 cut(s)	628, 777, 1007
BstHHI	GCGC	3 cut(s)	118, 460, 598
BstKTI	GATC	6 cut(s)	164, 189, 418, 670, 760, 1194
BstMAI	GTCTC	4 cut(s)	176, 342, 892, 1045
BstMBI	GATC	6 cut(s)	161, 186, 415, 667, 757, 1191
BstMWI	GCNNNNNNNGC	9 cut(s)	58, 491, 503, 512, 599, 608, 620, 701, 743
BstSCI	CCNGG	1 cut(s)	1072
BstSFI	CTRYAG	4 cut(s)	501, 693, 735, 747
BstUI	CGCG	3 cut(s)	628, 777, 1007
BstV2I	GAAGAC	1 cut(s)	1095
BstX2I	RGATCY	2 cut(s)	186, 1191
BstYI	RGATCY	2 cut(s)	186, 1191
BsuI	GTATCC	1 cut(s)	577
BsuRI	GGCC	3 cut(s)	158, 839, 1072
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	585, 602, 1059
BtsIMutI	CAGTG	4 cut(s)	108, 325, 358, 934
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	4 cut(s)	59, 468, 600, 998
CciI	TCATGA	1 cut(s)	723
CfoI	GCGC	3 cut(s)	118, 460, 598
Cfr13I	GGNCC	1 cut(s)	1071
Csp6I	GTAC	2 cut(s)	814, 915
CviAII	CATG	7 cut(s)	53, 181, 292, 437, 665, 724, 1213
CviQI	GTAC	2 cut(s)	814, 915
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	6 cut(s)	163, 188, 417, 669, 759, 1193
DpnII	GATC	6 cut(s)	161, 186, 415, 667, 757, 1191
EaeI	YGGCCR	2 cut(s)	156, 837
Eam1104I	CTCTTC	3 cut(s)	351, 935, 936
EarI	CTCTTC	3 cut(s)	351, 935, 936
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	180, 1103
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	1045
Eco32I	GATATC	1 cut(s)	721
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	1206
Eco72I	CACGTG	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	15
EcoRV	GATATC	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	180, 1103
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	2 cut(s)	180, 1103
FaeI	CATG	7 cut(s)	56, 184, 295, 440, 668, 727, 1216
FalI	AAGNNNNNCTT	2 cut(s)	915, 947
FatI	CATG	7 cut(s)	52, 180, 291, 436, 664, 723, 1212
FauI	CCCGC	2 cut(s)	50, 1000
FauNDI	CATATG	2 cut(s)	1176, 1200
FbaI	TGATCA	2 cut(s)	667, 757
FblI	GTMKAC	1 cut(s)	1050
FokI	GGATG	3 cut(s)	589, 592, 1046
FriOI	GRGCYC	1 cut(s)	17
FspBI	CTAG	2 cut(s)	599, 617
FspI	TGCGCA	1 cut(s)	459
GlaI	GCGC	3 cut(s)	117, 459, 597
GsaI	CCCAGC	2 cut(s)	489, 1067
GsuI	CTGGAG	3 cut(s)	83, 318, 1065
HaeIII	GGCC	3 cut(s)	158, 839, 1072
HapII	CCGG	1 cut(s)	1074
HhaI	GCGC	3 cut(s)	118, 460, 598
Hin1II	CATG	7 cut(s)	56, 184, 295, 440, 668, 727, 1216
Hin6I	GCGC	3 cut(s)	116, 458, 596
HinP1I	GCGC	3 cut(s)	116, 458, 596
HinfI	GANTC	4 cut(s)	140, 169, 272, 1047
HpaII	CCGG	1 cut(s)	1074
HphI	GGTGA	1 cut(s)	1178
Hpy166II	GTNNAC	3 cut(s)	217, 1051, 1182
Hpy188I	TCNGA	4 cut(s)	259, 420, 446, 571
Hpy188III	TCNNGA	3 cut(s)	533, 724, 1044
Hpy8I	GTNNAC	3 cut(s)	217, 1051, 1182
HpyAV	CCTTC	3 cut(s)	415, 848, 1181
HpyCH4III	ACNGT	7 cut(s)	103, 353, 526, 751, 818, 829, 1055
HpyCH4IV	ACGT	3 cut(s)	211, 219, 913
HpyF10VI	GCNNNNNNNGC	9 cut(s)	58, 491, 503, 512, 599, 608, 620, 701, 743
HpyF3I	CTNAG	1 cut(s)	175
HpySE526I	ACGT	3 cut(s)	211, 219, 913
Hsp92II	CATG	7 cut(s)	56, 184, 295, 440, 668, 727, 1216
HspAI	GCGC	3 cut(s)	116, 458, 596
Ksp22I	TGATCA	2 cut(s)	667, 757
Kzo9I	GATC	6 cut(s)	161, 186, 415, 667, 757, 1191
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	5 cut(s)	20, 656, 740, 779, 901
LweI	GCATC	2 cut(s)	515, 611
MaeI	CTAG	2 cut(s)	599, 617
MaeII	ACGT	3 cut(s)	211, 219, 913
MaeIII	GTNAC	3 cut(s)	312, 1055, 1166
MalI	GATC	6 cut(s)	163, 188, 417, 669, 759, 1193
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	6 cut(s)	161, 186, 415, 667, 757, 1191
MboII	GAAGA	5 cut(s)	368, 442, 923, 952, 1100
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	2 cut(s)	186, 1191
MhlI	GDGCHC	2 cut(s)	17, 931
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	4 cut(s)	510, 572, 1145, 1207
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	3 cut(s)	149, 178, 1056
MmeI	TCCRAC	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	5 cut(s)	299, 410, 731, 792, 909
MslI	CAYNNNNRTG	2 cut(s)	210, 212
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	3 cut(s)	545, 593, 1130
MspI	CCGG	1 cut(s)	1074
MspR9I	CCNGG	1 cut(s)	1074
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	1157
MvnI	CGCG	3 cut(s)	628, 777, 1007
MwoI	GCNNNNNNNGC	9 cut(s)	58, 491, 503, 512, 599, 608, 620, 701, 743
NciI	CCSGG	1 cut(s)	1074
NcoI	CCATGG	1 cut(s)	180
NdeI	CATATG	2 cut(s)	1176, 1200
NdeII	GATC	6 cut(s)	161, 186, 415, 667, 757, 1191
NheI	GCTAGC	1 cut(s)	598
NlaIII	CATG	7 cut(s)	56, 184, 295, 440, 668, 727, 1216
NlaIV	GGNNCC	2 cut(s)	658, 1193
NmeAIII	GCCGAG	2 cut(s)	685, 865
NmuCI	GTSAC	2 cut(s)	1055, 1166
NsbI	TGCGCA	1 cut(s)	459
OliI	CACNNNNGTG	2 cut(s)	210, 212
PagI	TCATGA	1 cut(s)	723
PciSI	GCTCTTC	1 cut(s)	936
PctI	GAATGC	1 cut(s)	1157
PfeI	GAWTC	1 cut(s)	272
Pfl23II	CGTACG	1 cut(s)	914
PflMI	CCANNNNNTGG	1 cut(s)	165
PleI	GAGTC	3 cut(s)	148, 177, 1055
PmaCI	CACGTG	1 cut(s)	212
PmlI	CACGTG	1 cut(s)	212
PpsI	GAGTC	3 cut(s)	148, 177, 1055
Ppu21I	YACGTR	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	17
Psp1406I	AACGTT	1 cut(s)	219
PspCI	CACGTG	1 cut(s)	212
PspFI	CCCAGC	2 cut(s)	485, 1063
PspLI	CGTACG	1 cut(s)	914
PspN4I	GGNNCC	2 cut(s)	658, 1193
PspPI	GGNCC	1 cut(s)	1071
PstI	CTGCAG	2 cut(s)	697, 739
PsuI	RGATCY	2 cut(s)	186, 1191
PvuII	CAGCTG	3 cut(s)	545, 593, 1130
RsaI	GTAC	2 cut(s)	815, 916
RsaNI	GTAC	2 cut(s)	814, 915
RseI	CAYNNNNRTG	2 cut(s)	210, 212
SacI	GAGCTC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	5 cut(s)	299, 410, 731, 792, 909
Sau3AI	GATC	6 cut(s)	161, 186, 415, 667, 757, 1191
Sau96I	GGNCC	1 cut(s)	1071
SchI	GAGTC	3 cut(s)	149, 178, 1056
ScrFI	CCNGG	1 cut(s)	1074
SduI	GDGCHC	2 cut(s)	17, 931
SfaNI	GCATC	2 cut(s)	515, 611
SfcI	CTRYAG	4 cut(s)	501, 693, 735, 747
SmiMI	CAYNNNNRTG	2 cut(s)	210, 212
Sse9I	AATT	4 cut(s)	510, 572, 1145, 1207
SspMI	CTAG	2 cut(s)	599, 617
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	1072
StyI	CCWWGG	2 cut(s)	180, 1103
TaaI	ACNGT	7 cut(s)	103, 353, 526, 751, 818, 829, 1055
TaiI	ACGT	3 cut(s)	214, 222, 916
TaqI	TCGA	1 cut(s)	143
TasI	AATT	4 cut(s)	510, 572, 1145, 1207
TauI	GCSGC	2 cut(s)	121, 124
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	5 cut(s)	299, 410, 731, 792, 909
Tru9I	TTAA	5 cut(s)	299, 410, 731, 792, 909
TscAI	CASTG	4 cut(s)	108, 325, 358, 941
TseFI	GTSAC	2 cut(s)	1055, 1166
Tsp45I	GTSAC	2 cut(s)	1055, 1166
TspDTI	ATGAA	4 cut(s)	377, 453, 1004, 1201
TspGWI	ACGGA	3 cut(s)	57, 152, 1184
TspRI	CASTG	4 cut(s)	108, 325, 358, 941
Van91I	CCANNNNNTGG	1 cut(s)	165
XapI	RAATTY	2 cut(s)	1145, 1207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	1050
XspI	CTAG	2 cut(s)	599, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.