pycom15g10970

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006028
Physical Location & Seq
Forward (+)
7360283 .. 7361031
749 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGAGCAGGCCAGGAGATTGGAACTGTAGGTCATGCAACCATCTCAACTTCCAAAGGAGGGACTCGTGCCAGAGGTGTGGGGATGCAAAAAGTGGGGAGAGGGTTGAGTATGGAAGTTTTGGTGGTGGAAGAGGTGGAGGTGGCGGTGGTTCGTTTGGATTCACCACTGGTCCAGATGTCCGCCCCGGTGACTGGTACTGCACCATTGGCAACTGTGGAGCTCACAACTTTGCCAGCCGCTCCAGTTGCTTCAAGTGTGGTGCGTCTAAGGACGAATTGTCAAGTGGCGGGGGCGGTGGTTTTGAGGGTGACATGCCTAGGTCACTGAGAGGGTTTGGCTTTGGCGGCAGTGGAAGTAGCTCTGGTCGCTCCGGATGGAAATCTGGAGACTGGATTTGCACAAGGTCAGGGTGCAATGAGCACAACTTCGCTAGCAGAACGGAATGTTTCAGATGCAATGCTCCAAGGGACTCCAACGATGACAAGTCTCCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

166

Amino Acids

17.45

Weight (kDa)

8.49

Isoelectric Point (pI)

66.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 127 - 156 4.4e-09 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 371
AciI CCGC 6 cut(s) 144, 181, 238, 288, 294, 345
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 58, 192
AgsI TTSAA 1 cut(s) 253
AhdI GACNNNNNGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 2 cut(s) 221, 360
AluI AGCT 2 cut(s) 221, 360
Alw21I GWGCWC 2 cut(s) 223, 423
Alw26I GTCTC 2 cut(s) 381, 492
Aor13HI TCCGGA 1 cut(s) 371
AoxI GGCC 1 cut(s) 8
AspA2I CCTAGG 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 154, 200, 320
AsuNHI GCTAGC 1 cut(s) 431
AvaII GGWCC 1 cut(s) 170
AvrII CCTAGG 1 cut(s) 317
BanII GRGCYC 1 cut(s) 223
BauI CACGAG 1 cut(s) 64
Bbv12I GWGCWC 2 cut(s) 223, 423
BccI CCATC 2 cut(s) 48, 369
BciT130I CCWGG 1 cut(s) 12
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 381, 492
BfaI CTAG 2 cut(s) 318, 432
BfmI CTRYAG 1 cut(s) 25
BisI GCNGC 2 cut(s) 238, 346
BlnI CCTAGG 1 cut(s) 317
BlsI GCNGC 2 cut(s) 239, 347
Bme1390I CCNGG 2 cut(s) 12, 186
Bme18I GGWCC 1 cut(s) 170
BmeRI GACNNNNNGTC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 170
BmrFI CCNGG 2 cut(s) 12, 186
BmsI GCATC 2 cut(s) 73, 443
BmtI GCTAGC 1 cut(s) 435
BpmI CTGGAG 2 cut(s) 226, 405
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 379
BsaJI CCNNGG 3 cut(s) 184, 317, 464
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 192
Bse1I ACTGG 4 cut(s) 172, 197, 243, 395
Bse3DI GCAATG 2 cut(s) 421, 463
Bse8I GATNNNNATC 1 cut(s) 379
BseAI TCCGGA 1 cut(s) 371
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 3 cut(s) 184, 317, 464
BseGI GGATG 2 cut(s) 88, 380
BseJI GATNNNNATC 1 cut(s) 379
BseLI CCNNNNNNNGG 2 cut(s) 58, 192
BseMI GCAATG 2 cut(s) 421, 463
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 4 cut(s) 172, 197, 243, 395
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 2 cut(s) 223, 423
BsiSI CCGG 2 cut(s) 186, 372
BslFI GGGAC 2 cut(s) 74, 482
BslI CCNNNNNNNGG 2 cut(s) 58, 192
BsmAI GTCTC 2 cut(s) 381, 492
BsmFI GGGAC 2 cut(s) 74, 482
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 2 cut(s) 223, 423
Bsp13I TCCGGA 1 cut(s) 371
BspACI CCGC 6 cut(s) 144, 181, 238, 288, 294, 345
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 318
BspEI TCCGGA 1 cut(s) 371
BspOI GCTAGC 1 cut(s) 435
BsrBI CCGCTC 1 cut(s) 240
BsrDI GCAATG 2 cut(s) 421, 463
BsrI ACTGG 4 cut(s) 172, 197, 243, 395
BssECI CCNNGG 3 cut(s) 184, 317, 464
BssSI CACGAG 1 cut(s) 64
BssT1I CCWWGG 2 cut(s) 317, 464
Bst2BI CACGAG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 26, 215
Bst6I CTCTTC 1 cut(s) 124
BstC8I GCNNGC 3 cut(s) 8, 235, 433
BstDEI CTNAG 2 cut(s) 267, 326
BstF5I GGATG 2 cut(s) 88, 380
BstMAI GTCTC 2 cut(s) 381, 492
BstMWI GCNNNNNNNGC 4 cut(s) 207, 246, 345, 366
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 2 cut(s) 10, 184
BstSFI CTRYAG 1 cut(s) 25
BstXI CCANNNNNNTGG 2 cut(s) 18, 77
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 2 cut(s) 88, 380
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 3 cut(s) 165, 323, 355
Cac8I GCNNGC 3 cut(s) 8, 235, 433
Cfr13I GGNCC 1 cut(s) 170
CseI GACGC 1 cut(s) 252
Csp6I GTAC 1 cut(s) 196
CviAII CATG 2 cut(s) 33, 313
CviJI RGCY 5 cut(s) 10, 221, 237, 339, 360
CviKI_1 RGCY 5 cut(s) 10, 221, 237, 339, 360
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 267, 326
DriI GACNNNNNGTC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 124
Eam1105I GACNNNNNGTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 124
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 221
Eco130I CCWWGG 2 cut(s) 317, 464
Eco24I GRGCYC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 2 cut(s) 317, 464
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 2 cut(s) 317, 464
FaeI CATG 2 cut(s) 36, 316
FaiI YATR 3 cut(s) 34, 111, 314
FaqI GGGAC 2 cut(s) 74, 482
FatI CATG 2 cut(s) 32, 312
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 2 cut(s) 238, 346
FokI GGATG 2 cut(s) 95, 387
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 2 cut(s) 238, 346
FspBI CTAG 2 cut(s) 318, 432
GluI GCNGC 2 cut(s) 238, 346
GsuI CTGGAG 2 cut(s) 226, 405
HaeIII GGCC 1 cut(s) 10
HapII CCGG 2 cut(s) 186, 372
HgaI GACGC 1 cut(s) 252
Hin1II CATG 2 cut(s) 36, 316
HinfI GANTC 3 cut(s) 62, 159, 470
HpaII CCGG 2 cut(s) 186, 372
HphI GGTGA 3 cut(s) 154, 200, 320
Hpy188I TCNGA 1 cut(s) 452
Hpy188III TCNNGA 3 cut(s) 173, 372, 384
HpyCH4III ACNGT 2 cut(s) 26, 215
HpyCH4V TGCA 6 cut(s) 36, 86, 201, 399, 414, 456
HpyF10VI GCNNNNNNNGC 4 cut(s) 207, 246, 345, 366
HpyF3I CTNAG 2 cut(s) 267, 326
Hsp92II CATG 2 cut(s) 36, 316
Kpn2I TCCGGA 1 cut(s) 371
LmnI GCTCC 4 cut(s) 218, 245, 374, 466
LweI GCATC 2 cut(s) 73, 443
MaeI CTAG 2 cut(s) 318, 432
MaeIII GTNAC 3 cut(s) 188, 308, 321
MbiI CCGCTC 1 cut(s) 240
MboII GAAGA 1 cut(s) 141
MhlI GDGCHC 2 cut(s) 223, 423
MluCI AATT 1 cut(s) 275
MlyI GAGTC 2 cut(s) 56, 464
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 7 cut(s) 51, 66, 93, 125, 131, 298, 323
MroI TCCGGA 1 cut(s) 371
MseI TTAA 1 cut(s) 496
MspI CCGG 2 cut(s) 186, 372
MspR9I CCNGG 2 cut(s) 12, 186
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 4 cut(s) 207, 246, 345, 366
NciI CCSGG 1 cut(s) 186
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 2 cut(s) 36, 316
NmuCI GTSAC 3 cut(s) 188, 308, 321
NspI RCATGY 1 cut(s) 316
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 239, 347
PleI GAGTC 2 cut(s) 56, 464
PpsI GAGTC 2 cut(s) 56, 464
Psp124BI GAGCTC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspPI GGNCC 1 cut(s) 170
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SacI GAGCTC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 2 cut(s) 238, 346
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 2 cut(s) 56, 464
ScrFI CCNGG 2 cut(s) 12, 186
SduI GDGCHC 2 cut(s) 223, 423
SetI ASST 8 cut(s) 32, 77, 136, 142, 223, 323, 362, 407
SfaNI GCATC 2 cut(s) 73, 443
SfcI CTRYAG 1 cut(s) 25
SinI GGWCC 1 cut(s) 170
Sse9I AATT 1 cut(s) 275
SsiI CCGC 6 cut(s) 144, 181, 238, 288, 294, 345
SspMI CTAG 2 cut(s) 318, 432
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 2 cut(s) 10, 184
StyI CCWWGG 2 cut(s) 317, 464
TaaI ACNGT 2 cut(s) 26, 215
TasI AATT 1 cut(s) 275
TauI GCSGC 2 cut(s) 240, 348
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TscAI CASTG 3 cut(s) 172, 330, 355
TseFI GTSAC 3 cut(s) 188, 308, 321
Tsp45I GTSAC 3 cut(s) 188, 308, 321
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 3 cut(s) 172, 330, 355
VpaK11BI GGWCC 1 cut(s) 170
XceI RCATGY 1 cut(s) 316
XmaJI CCTAGG 1 cut(s) 317
XspI CTAG 2 cut(s) 318, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.