Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003996

Physical Location & Seq

Genomic Coordinates Forward (+)

7602792 .. 7605615

Gene Structure 2824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAAATCTGTACATATCTCCCCTCTTGGGTCTCTGCCATTTTCACATGCGTGGGAGGCTGTCTTGGATGCTGTAGCCAACCCCGTGTACATATTCCAGTTGATGAGCCATCAAACAGACTGAGAATTCAAGGTCAATCAGTGAGAAAAAATAGCATATCAGAGGATTTCTGGAGTTCTAGCACTACTGAAATGGAGGACAGCGGAGTCCAGTCTCAGAAAAGCATCTCATCTGTTAGCACTTCAAATCCCCTTGATTCCCACAGTACTTCTGGCAGCACAAGCAATACAAGTGCATTTGTAAATCATGGTCTTTTACTCTGGAACCAGACAAGGAATCAGTGGCTTGCAAATAAACAGCCTCAACGCCAGAAGCAACTTCGAGAACCTAGAATAAGTTGGAACGCCACTTACGAGAGCTTACTCAGTACCAACAAGCCTTTTCCCCAGCCGATCCCTCTTCCTGAAATGGTCGATTTTCTCGTCGATATTTGGGAGCAAGAGGGTTTGTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

173

Amino Acids

19.35

Weight (kDa)

5.9

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
clamp_Gag1-like	PF13259	63 - 129	4.7e-11	Gag1-like, clamp domain
clamp_Gag1-like	PF13259	131 - 172	1.5e-13	Gag1-like, clamp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15350 AT1G15350 AT1G15350 AT1G15350 AT1G15350 AT1G15350
fragaria_vesca	FvH4_2g29110 FvH4_2g29110 FvH4_2g29110 FvH4_2g29110
malus_domestica	MD08G1149800.v1.1 MD15G1125100.v1.1
prunus_persica	Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1
pyrus_communis	pycom08g12580 pycom15g11270
rosa_chinensis	RchiOBHm_Chr6g0297991
rosa_laevigata	RLG00000011545
rosa_multiflora	Rmu_sc0002800.1_g000024
rosa_roxburghii	Rroxscaffold_7G00170020 Rroxscaffold_7G00178850
rosa_rugosa	Rorug06G0277500 Rorug06G0277500 Rorug06G0277600 Rorug06G0277700
rosa_samantha	Rh6AG388100 Rh6BG396300 Rh6CG402300 Rh6DG388500
rosa_wichuraiana	Rw6G033870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	126
AfaI	GTAC	4 cut(s)	13, 90, 268, 430
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	131, 246
AleI	CACNNNNGTG	1 cut(s)	50
AluBI	AGCT	1 cut(s)	420
AluI	AGCT	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	37, 219
AlwI	GGATC	1 cut(s)	448
ApeKI	GCWGC	1 cut(s)	276
ApoI	RAATTY	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	37, 219
BfaI	CTAG	2 cut(s)	180, 390
BfmI	CTRYAG	1 cut(s)	73
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
BmcAI	AGTACT	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	326
BmsI	GCATC	2 cut(s)	59, 234
BpmI	CTGGAG	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	98, 211
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	3 cut(s)	113, 230, 439
BseNI	ACTGG	2 cut(s)	98, 211
BseXI	GCAGC	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	447
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	37, 219
Bso31I	GGTCTC	1 cut(s)	37
Bsp1407I	TGTACA	2 cut(s)	11, 88
Bsp143I	GATC	1 cut(s)	453
BspACI	CCGC	1 cut(s)	204
BspCNI	CTCAG	3 cut(s)	114, 229, 438
BspLI	GGNNCC	1 cut(s)	326
BspPI	GGATC	1 cut(s)	448
BspTNI	GGTCTC	1 cut(s)	37
BsrGI	TGTACA	2 cut(s)	11, 88
BsrI	ACTGG	2 cut(s)	98, 211
BssMI	GATC	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	465
BstAUI	TGTACA	2 cut(s)	11, 88
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	3 cut(s)	122, 216, 425
BstF5I	GGATG	1 cut(s)	74
BstKTI	GATC	1 cut(s)	456
BstMAI	GTCTC	2 cut(s)	37, 219
BstMBI	GATC	1 cut(s)	453
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 282
BstNSI	RCATGY	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	2 cut(s)	147, 347
Cac8I	GCNNGC	1 cut(s)	348
Csp6I	GTAC	4 cut(s)	12, 89, 267, 429
CviAII	CATG	2 cut(s)	48, 308
CviJI	RGCY	8 cut(s)	60, 78, 109, 346, 361, 420, 439, 451
CviKI_1	RGCY	8 cut(s)	60, 78, 109, 346, 361, 420, 439, 451
CviQI	GTAC	4 cut(s)	12, 89, 267, 429
DdeI	CTNAG	3 cut(s)	122, 216, 425
DpnI	GATC	1 cut(s)	455
DpnII	GATC	1 cut(s)	453
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	126
FaeI	CATG	2 cut(s)	51, 311
FaiI	YATR	6 cut(s)	16, 49, 93, 158, 309, 513
FatI	CATG	2 cut(s)	47, 307
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	2 cut(s)	180, 390
GluI	GCNGC	1 cut(s)	277
GsaI	CCCAGC	1 cut(s)	451
GsuI	CTGGAG	1 cut(s)	193
Hin1II	CATG	2 cut(s)	51, 311
HinfI	GANTC	3 cut(s)	207, 257, 337
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	163, 219
Hpy188III	TCNNGA	4 cut(s)	172, 322, 383, 464
Hpy8I	GTNNAC	1 cut(s)	89
Hpy99I	CGWCG	1 cut(s)	488
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	2 cut(s)	296, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 282
HpyF3I	CTNAG	3 cut(s)	122, 216, 425
Hsp92II	CATG	2 cut(s)	51, 311
Kzo9I	GATC	1 cut(s)	453
LmnI	GCTCC	1 cut(s)	496
LpnPI	CCDG	9 cut(s)	111, 157, 224, 258, 307, 341, 383, 461, 477
Lsp1109I	GCAGC	1 cut(s)	288
LweI	GCATC	2 cut(s)	59, 234
MaeI	CTAG	2 cut(s)	180, 390
MalI	GATC	1 cut(s)	455
MboI	GATC	1 cut(s)	453
MboII	GAAGA	1 cut(s)	452
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	7 cut(s)	34, 50, 157, 190, 372, 468, 496
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	57, 282
NdeII	GATC	1 cut(s)	453
NlaIII	CATG	2 cut(s)	51, 311
NlaIV	GGNNCC	1 cut(s)	326
NspI	RCATGY	1 cut(s)	51
OliI	CACNNNNGTG	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	2 cut(s)	411, 480
PfeI	GAWTC	2 cut(s)	257, 337
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	326
PsrI	GAACNNNNNNTAC	2 cut(s)	395, 427
RsaI	GTAC	4 cut(s)	13, 90, 268, 430
RsaNI	GTAC	4 cut(s)	12, 89, 267, 429
RseI	CAYNNNNRTG	1 cut(s)	50
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	1 cut(s)	453
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	1 cut(s)	216
SetI	ASST	3 cut(s)	136, 391, 422
SfaNI	GCATC	2 cut(s)	59, 234
SfcI	CTRYAG	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	2 cut(s)	180, 390
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	3 cut(s)	382, 474, 486
TasI	AATT	1 cut(s)	126
TatI	WGTACW	3 cut(s)	11, 88, 266
TfiI	GAWTC	2 cut(s)	257, 337
TscAI	CASTG	2 cut(s)	147, 347
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	147, 347
XapI	RAATTY	1 cut(s)	126
XceI	RCATGY	1 cut(s)	51
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XspI	CTAG	2 cut(s)	180, 390
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.