Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004616

Physical Location & Seq

Genomic Coordinates Forward (+)

8860386 .. 8861693

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCTGATTTTGATCACATTTATCGAAATATCGATCTTCAACCGGTCATCTCTACTTAACACGGCAGCTGTCAGCGGCAACACTGAAGATGTAAGGCCTGAATTAGCTGAAGCAGATGTGGTTGTTTTTCTCGGTGATTTCAATTATCGGCTTTTTGGTATATCTTACGATGAAGCAAGGGACTTTGTTTCACAAAGATGCTTTGATTGGCTCAGAGAAAAAGATCAGCTCAGAGCAGAGATGAAAGCCGGAAAAGTTTTCCAAGGGATGCGTGAGGCACTCATCAGATTCCCTCCAACATACAAGTTTGAAAGGCACCAAGCAGGTTTAGCAGGATATGATTCTGGTGAGAAGAAACGCATTCCTGCCTGGTGCGATAGAATAATATATCGTGACAATCGGCCATTACCAGTTGCTGAGTGCAGTTTAGAGTGCCCTGTAGTCTCGTCAATTATACAATATGAGGCACGCATGGACGTGACTGACAGTGATCACAAACCTGTCCGGTGCAAACTAAGTTTACAAATTGCACATGTTGATAGATCGGTAAGGAGAAAGGAGTTTGGGGAAATTGTAAAATCCAATCAGAATATCAGGTCTAATCTTGAAGAATCAAATTATGTTCCAGAAACTATTTTGAACACCAACAACATAATCCTTCAAAATCAGGACACGTCCATTTTGCGTATCACTAATAAATGTGTAAAGGATACTGCCGTATTTAAAATCACTTGTGAAGGCCAGTCCACTGTCAAGGAGGATGGGGAAGAGCCTGACTATCGCCCGAGAGGTGCCAACGGGTTTCCTCGATGGCTTGAGGTATCACTTTCTCCCTGCTGCTTTTGTTATGTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

286

Amino Acids

32.69

Weight (kDa)

5.81

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05630 AT1G05630 AT1G05630 AT2G31830 AT2G31830 AT2G31830 AT2G43900 AT2G43900
fragaria_vesca	FvH4_5g18650 FvH4_5g18650 FvH4_5g18650 FvH4_5g18650
malus_domestica	MD00G1087600.v1.1 MD15G1143600.v1.1
prunus_persica	Prupe.7G062000_v2.0.a1
pyrus_communis	pycom15g12950 pycom15g12960 pycom15g12970 pycom290g00230
rosa_chinensis	RchiOBHm_Chr7g0176851
rosa_laevigata	RLG00000005579
rosa_multiflora	Rmu_co8238923.1_g000001 Rmu_sc0005310.1_g000054 Rmu_sc0027976.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276340
rosa_rugosa	Rorug06G0401200
rosa_samantha	Rh7AG000500 Rh7BG000900 Rh7CG000500 Rh7DG000700
rosa_wichuraiana	Rw7G000040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	314
AccB1I	GGYRCC	2 cut(s)	315, 791
AciI	CCGC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	401
AcuI	CTGAAG	2 cut(s)	105, 129
AflIII	ACRYGT	2 cut(s)	532, 672
AgeI	ACCGGT	1 cut(s)	42
AgsI	TTSAA	6 cut(s)	40, 142, 311, 608, 640, 662
AjiI	CACGTC	2 cut(s)	478, 675
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	3 cut(s)	68, 107, 229
AluI	AGCT	3 cut(s)	68, 107, 229
Alw26I	GTCTC	1 cut(s)	448
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	784
AoxI	GGCC	3 cut(s)	95, 401, 739
ApeKI	GCWGC	2 cut(s)	65, 837
AsiGI	ACCGGT	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	146, 359
AvaI	CYCGRG	1 cut(s)	784
BaeGI	GKGCMC	1 cut(s)	437
BaeI	ACNNNNGTAYC	2 cut(s)	702, 735
BanI	GGYRCC	2 cut(s)	315, 791
BbvI	GCAGC	2 cut(s)	77, 824
BccI	CCATC	2 cut(s)	755, 804
BceAI	ACGGC	2 cut(s)	78, 701
BciT130I	CCWGG	1 cut(s)	370
BciVI	GTATCC	1 cut(s)	703
BclI	TGATCA	2 cut(s)	12, 490
BcoDI	GTCTC	1 cut(s)	448
BfmI	CTRYAG	1 cut(s)	438
BfuAI	ACCTGC	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	3 cut(s)	66, 76, 838
BlsI	GCNGC	3 cut(s)	67, 77, 839
Bme1390I	CCNGG	1 cut(s)	370
BmeT110I	CYCGRG	1 cut(s)	784
BmgBI	CACGTC	2 cut(s)	478, 675
BmiI	GGNNCC	2 cut(s)	317, 793
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	2 cut(s)	188, 258
BpuEI	CTTGAG	1 cut(s)	836
Bsa29I	ATCGAT	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	2 cut(s)	42, 504
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	2 cut(s)	410, 742
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	370
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	2 cut(s)	273, 766
BseJI	GATNNNNATC	1 cut(s)	11
BseMII	CTCAG	3 cut(s)	226, 244, 408
BseNI	ACTGG	2 cut(s)	410, 742
BseSI	GKGCMC	1 cut(s)	437
BseXI	GCAGC	2 cut(s)	77, 824
BsgI	GTGCAG	1 cut(s)	442
BshFI	GGCC	3 cut(s)	97, 403, 741
BshNI	GGYRCC	2 cut(s)	315, 791
BshTI	ACCGGT	1 cut(s)	42
BshVI	ATCGAT	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	784
BsiSI	CCGG	3 cut(s)	43, 249, 505
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	3 cut(s)	97, 403, 741
BsoBI	CYCGRG	1 cut(s)	784
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	5 cut(s)	12, 33, 223, 490, 542
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	3 cut(s)	97, 403, 741
BspCNI	CTCAG	3 cut(s)	225, 243, 409
BspDI	ATCGAT	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	317, 793
BspMI	ACCTGC	1 cut(s)	314
BspQI	GCTCTTC	1 cut(s)	762
BspT107I	GGYRCC	2 cut(s)	315, 791
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	410, 742
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	5 cut(s)	12, 33, 223, 490, 542
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	488, 751
Bst6I	CTCTTC	1 cut(s)	762
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	4 cut(s)	212, 230, 417, 515
BstF5I	GGATG	2 cut(s)	273, 766
BstKTI	GATC	5 cut(s)	15, 36, 226, 493, 545
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	5 cut(s)	12, 33, 223, 490, 542
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	437
BstV1I	GCAGC	2 cut(s)	77, 824
Bsu15I	ATCGAT	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	97, 403, 741
BsuTUI	ATCGAT	1 cut(s)	32
BtrI	CACGTC	2 cut(s)	478, 675
BtsCI	GGATG	2 cut(s)	273, 766
BtsIMutI	CAGTG	3 cut(s)	81, 493, 747
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	469
CaiI	CAGNNNCTG	1 cut(s)	416
Cfr10I	RCCGGY	1 cut(s)	42
ClaI	ATCGAT	1 cut(s)	32
CspAI	ACCGGT	1 cut(s)	42
CviAII	CATG	2 cut(s)	472, 533
DdeI	CTNAG	4 cut(s)	212, 230, 417, 515
DpnI	GATC	5 cut(s)	14, 35, 225, 492, 544
DpnII	GATC	5 cut(s)	12, 33, 223, 490, 542
DraI	TTTAAA	1 cut(s)	724
EaeI	YGGCCR	1 cut(s)	401
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
Eco130I	CCWWGG	1 cut(s)	262
Eco147I	AGGCCT	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	105, 129
Eco88I	CYCGRG	1 cut(s)	784
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	475, 536
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	471, 532
FbaI	TGATCA	2 cut(s)	12, 490
Fnu4HI	GCNGC	3 cut(s)	66, 76, 838
FokI	GGATG	2 cut(s)	280, 773
Fsp4HI	GCNGC	3 cut(s)	66, 76, 838
GluI	GCNGC	3 cut(s)	66, 76, 838
HaeIII	GGCC	3 cut(s)	97, 403, 741
HapII	CCGG	3 cut(s)	43, 249, 505
Hin1II	CATG	2 cut(s)	475, 536
HinfI	GANTC	3 cut(s)	288, 341, 611
HpaII	CCGG	3 cut(s)	43, 249, 505
HphI	GGTGA	2 cut(s)	146, 359
Hpy166II	GTNNAC	2 cut(s)	521, 747
Hpy188I	TCNGA	4 cut(s)	215, 233, 287, 588
Hpy188III	TCNNGA	4 cut(s)	392, 605, 626, 668
Hpy8I	GTNNAC	2 cut(s)	521, 747
HpyAV	CCTTC	2 cut(s)	668, 731
HpyCH4III	ACNGT	2 cut(s)	488, 751
HpyCH4IV	ACGT	2 cut(s)	477, 674
HpyCH4V	TGCA	3 cut(s)	423, 510, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	4 cut(s)	212, 230, 417, 515
HpySE526I	ACGT	2 cut(s)	477, 674
Hsp92II	CATG	2 cut(s)	475, 536
Ksp22I	TGATCA	2 cut(s)	12, 490
Kzo9I	GATC	5 cut(s)	12, 33, 223, 490, 542
LguI	GCTCTTC	1 cut(s)	762
Lsp1109I	GCAGC	2 cut(s)	77, 824
LweI	GCATC	2 cut(s)	188, 258
MaeII	ACGT	2 cut(s)	477, 674
MaeIII	GTNAC	2 cut(s)	392, 478
MalI	GATC	5 cut(s)	14, 35, 225, 492, 544
MboI	GATC	5 cut(s)	12, 33, 223, 490, 542
MboII	GAAGA	5 cut(s)	28, 98, 364, 620, 779
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	6 cut(s)	101, 142, 450, 525, 570, 616
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	7 cut(s)	268, 303, 457, 751, 782, 811, 816
MseI	TTAA	2 cut(s)	57, 723
MslI	CAYNNNNRTG	2 cut(s)	196, 476
MspA1I	CMGCKG	2 cut(s)	68, 75
MspI	CCGG	3 cut(s)	43, 249, 505
MspR9I	CCNGG	1 cut(s)	370
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	5 cut(s)	12, 33, 223, 490, 542
NlaIII	CATG	2 cut(s)	475, 536
NlaIV	GGNNCC	2 cut(s)	317, 793
NmuCI	GTSAC	2 cut(s)	392, 478
NspI	RCATGY	1 cut(s)	536
PceI	AGGCCT	1 cut(s)	97
PciI	ACATGT	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	762
PctI	GAATGC	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	288, 341, 611
PinAI	ACCGGT	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	67, 77, 839
PscI	ACATGT	1 cut(s)	532
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	2 cut(s)	317, 793
PstNI	CAGNNNCTG	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	68
RseI	CAYNNNNRTG	2 cut(s)	196, 476
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	2 cut(s)	57, 723
SatI	GCNGC	3 cut(s)	66, 76, 838
Sau3AI	GATC	5 cut(s)	12, 33, 223, 490, 542
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	1 cut(s)	437
SfaNI	GCATC	2 cut(s)	188, 258
SfcI	CTRYAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	2 cut(s)	196, 476
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	6 cut(s)	101, 142, 450, 525, 570, 616
SseBI	AGGCCT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	2 cut(s)	488, 751
TaiI	ACGT	2 cut(s)	480, 677
TaqI	TCGA	3 cut(s)	24, 32, 808
TasI	AATT	6 cut(s)	101, 142, 450, 525, 570, 616
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	3 cut(s)	288, 341, 611
Tru1I	TTAA	2 cut(s)	57, 723
Tru9I	TTAA	2 cut(s)	57, 723
TscAI	CASTG	3 cut(s)	88, 493, 754
TseFI	GTSAC	2 cut(s)	392, 478
TseI	GCWGC	2 cut(s)	65, 837
Tsp45I	GTSAC	2 cut(s)	392, 478
TspDTI	ATGAA	2 cut(s)	186, 257
TspRI	CASTG	3 cut(s)	88, 493, 754
XceI	RCATGY	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.