Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004616

Physical Location & Seq

Genomic Coordinates Reverse (-)

68709424 .. 68714648

Gene Structure 5225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005579

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3522 bp

ATGGACGAGAGGAGTGACGACGAGGACAAGGATGCATTGGCCGGGTTAAGCTCTGCCCCTGCTCCGCCCCGGAAATCGCACTCATTAAGCCAGCAACTGCGTGGAACCTCAGCTCAGAAACGGCACCAACTGCGCAAGCATAGCCTCGATGATGTCCACGTACCCATGAACGTTGTTAATGCGGATCCCTACTACGATTCTTCCGACGATGATTTCTTTCCCTACTCGTCCAACACCACCAGTGCATCATCCAACATGACTATGAGTGCTGAGGAGTACGTCTCCTCCTCGCATAGATTAGACCAAAGCCTGTGCATGGAGGGCGGTGTGGATCATCATGAACCAGGCAGCAGCAGGGAAATCCAGCCATTACCTGAATTCATAGGGAGTGGCGGCGGAACAGGAATTTTTAGGGTCCCAACGCGGGCTGCAGTGCATCCCGGTCGGCCTCCATGCTTGGAGTTGAGACCACACCCTTTGAGGGAAACTCAGGTAGGGAGGTTCCTTAGAACCATTGCGTGCACCGAGACACAACTCTGGGCTGGTCAGGAGGGTGGAGTCAGGGTCTGGAATCTTAAGGATGTATTTGAACCTGGGTGCGGTCTCGGAGGCAGGGTCCTGAGGGGTGATGAGGATGCAGCGCCTTACTATGAATCTGCAAACACCTCTCCTGCCATGTTTTTGATGGTTGATGTTGGGAATAAGTTGATTTGGAGCGGGCATAAGGATGGCAAGATTAGGTCTTGGAAGATGGATCAGCCTTTGGATGCTTCTACTCCTTTTAAGGAAGGGCTTTCCTGGCAGGCGCACCGTGCTCCTGTTCTTGCCATGGTTATGACTTCTTATGGTGATATGTGGTCAGGTTCTGAGGGTGGTGTTATTAAGATCTGGCCATGGGAATCCATTGAAAAATCTCTTTCTCTAAAGCCAGAGGAAAGACACATGGCAGCTTTACTGGTGGAGAGGTCATGCATTGACCTTAGGAGCCAGGTTACTGTAAATGGTGTCTGCAGTATATCTTCTCAAGATGTCAAGTGTTTGTTATCTGATAATTTTAGAGCAAAAGTTTGGTGTACTGGGTCTATGTCCTTCTCATTGTGGGATGCTCGTACACGAGAGCTTGTGAAAGTCTTTAATGTAGATGGTCAGATTGAGAATAGAGTTGACATGTCGTCTGTGCAGCAAGATCAAGCATCAGTAGAAGATGAGATGAAGGTGAAATTTGTTTCGACGACGAAAAAGGAGAAATCGCAGGGCTTTTTGCAACGGTCCCGCAATGCTATAATGGGAGCTGCAGATGCTGTTCGCCGAGTTGCAACCAGAGGGGCAGGGGCATTTGTAGAAGATGCCAAGAAAACGGAAGCACTAGTGCTAACTGCAGATGGCATGATATGGAGCGGATGTACAAATGGTTTATTGGTACAGTGGGATGGGAATGGAAACCGTGTTCAAGATTTTAATCACCATCCTTCTGCTGTCCAGTGCTTTTGCACATTTGGGGCACGCATATATGTAGGATATGCGAGTGGTCACATCCAGGTCTTGGATCTTGAGGGAAATCTGATTGCAAGATGGGTTGCACACAGTAGTCCGGTCATAAAATTGGCAGTTGGAACTGGTTGTATTTATAGCTTGGCTACTCACGGTGGAATACGTGGATGGAACATGAAATCTCCAGGACCTGGTGATGACATACTACGTTCTGAATTGGCTGCTAAAGAAAGTATATATACTACAAGAGACAATGTTAGAATTTTGATTGGCTCATGGAATGTTGGTCAAGGAAGAGCATCTCATGGTTCACTCATGTCATGGTTGGGTTCCGCTGTGCCAGATGTTGGTATTGTAGTTGTTGGGTTGCAAGAAGTAGAAATGGGTGCAGGTTTTCTTGCAATGTCTGCAGCAAAAGAAACTGTAGGGCTTGAAGGGAGTTCTGTTGGGCACTGGTGGCTGGATAATATAGGAAAGGCTTTAGAAGAAGGAAAAACTTTCGAACGTATGGGTTCTAGGCAGCTAGCAGGCTTGCTCATATCTCTTTGGGTAAGAAAAAATCTTAGAACACACGTTGGAGATATAGATGCTGGAGCAGTTCCATGCGGCTTTGGTCGTGCCATTGGCAACAAGGGAGGTGTAGGTTTGAGAATCAGAGTCTATGATCGGATAATGTGCTTTGTGAACTGTCACTTGGCTGCACATTTGGAAGCTGTCAATCGCCGCAATGCTGACTTTGATCACATTTATCGAAATATGGTCTTCAATCGATCATCTCTACTTAACACAGCAGCTGGTATGATACCATACCTGTTTTTGTCTTGCTCTCTTGCCTTCTCTACATATTTATTTTGGCTGCTTTATTCTTCTGGCTTGCCATGGGTACTCTCTCTTGCAGCTGGTGTGTCTACTGCAGTTAACACGGTTCGGACTACAAATGCTGCAGGCAGCAACTCTGAAGAAGCAGCAAGACCTGAATTAGCCGAAGCCGATGTGGTTGTTTTTCTGGGTGATTTCAATTACCGACTTTTTGGTATATCTTATGATGAAGCAAGGGACTTCGTTTCACAAAGATGCTTTGATTGGCTCAGAGAAAAAGATCAGCTCAGAGCAGAGATGAAAGCTGGGAAAGTTTTCCAAGGGATGCGTGAGGCACTCATCAGATTCCCTCCCACTTACAAGTTTGAAAGGCACCAAGCAGGTTTAGCAGGATATGATGCTGGTGAGAAGAAACGAATTCCTGCCTGGTGTGACAGAATAATATATCGTGATAATCGATCAGCTCCAGTCTCTGAGTGCAGTTTAGAGTGCCCTGTGGTCTCAGCAATTTTACAGTATGATGCATGCATGGATGTGACTGACAGTGATCACAAACCTGTGCGGTGTAAATTAACTGTACAAATTGCCCATGTTGATAGATCGGTAAGGAGAGGGGAGTTTGGGGAAATTATTAGATCCAATGAGAAAATCAGATCTATGCTTGAAGAATTGAATTATGTTCCTGAAACTAGTGTGAACACAAACAGTATAATCCTTCAAAATCAGGATACATCCATTTTGCGTATCACCAATAAATGTGTGAAGGATATGGCCATATTTAAAATCATTTGCGAAGGTCACTCCACTGTCAAGGAGGATGGAGAAGAGCCTGATTATCGCCCAAGAGGTGCCAACGGGTTTCCCAGATGGCTTGAGGTCACACCAGCAGCTGGCATGATTAAAACTGAACAATCTGCGGAAGTATCCGTTCATCATGAAGAGTTCCATACTTTAGAAGAATTTGTTGATGGCATCCCTCAAAATTGGTGGTGTGAAGATACTCGTGATAAGGAAGTGATTTTGCTGGTGAATGTGCAAGGTAGCTGCTCACCGCAAACATACACTCACCGAATCCGTGTGAGGCATTGCTTCTCAGCCAAGACAGTATCGCGCATTGACTCCAAATCCAACAGCTCTAGAAAAGGCCAGGGAAGTCCAGTTCACAAGCAACCTGCTAACACTTCAAGTGAAACTAACTCAAAAAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

1174

Amino Acids

129.76

Weight (kDa)

6.51

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_IP5PC_F	PF23754	160 - 554	1.6e-230	IP5P C-F beta-propeller
Exo_endo_phos	PF03372	588 - 954	1e-05	Endonuclease/Exonuclease/phosphatase family
Exo_endo_phos2	PF22669	589 - 958	7e-61	Endonuclease/Exonuclease/phosphatase family 2
Ig-like_IP5PC_F	PF23755	997 - 1133	4.2e-72	IP5P C-F Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05630 AT1G05630 AT1G05630 AT2G31830 AT2G31830 AT2G31830 AT2G43900 AT2G43900
fragaria_vesca	FvH4_5g18650 FvH4_5g18650 FvH4_5g18650 FvH4_5g18650
malus_domestica	MD00G1087600.v1.1 MD15G1143600.v1.1
prunus_persica	Prupe.7G062000_v2.0.a1
pyrus_communis	pycom15g12950 pycom15g12960 pycom15g12970 pycom290g00230
rosa_chinensis	RchiOBHm_Chr7g0176851
rosa_laevigata	RLG00000005579
rosa_multiflora	Rmu_co8238923.1_g000001 Rmu_sc0005310.1_g000054 Rmu_sc0027976.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276340
rosa_rugosa	Rorug06G0401200
rosa_samantha	Rh7AG000500 Rh7BG000900 Rh7CG000500 Rh7DG000700
rosa_wichuraiana	Rw7G000040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	134
Acc36I	ACCTGC	3 cut(s)	1871, 2681, 3490
AccB1I	GGYRCC	3 cut(s)	123, 2682, 3158
AccB7I	CCANNNNNTGG	4 cut(s)	1543, 1682, 1838, 3200
AccBSI	CCGCTC	2 cut(s)	717, 1398
AccI	GTMKAC	1 cut(s)	2399
AccII	CGCG	2 cut(s)	424, 3421
AclI	AACGTT	1 cut(s)	171
AclWI	GGATC	6 cut(s)	179, 192, 339, 762, 1554, 2940
AcoI	YGGCCR	3 cut(s)	39, 890, 3081
AcsI	RAATTY	6 cut(s)	377, 405, 1220, 1752, 2727, 3269
AcuI	CTGAAG	1 cut(s)	2469
AfaI	GTAC	8 cut(s)	162, 278, 1075, 1111, 1405, 1422, 2376, 2889
AfiI	CCNNNNNNNGG	8 cut(s)	316, 424, 481, 599, 1543, 1682, 1838, 3200
AflII	CTTAAG	1 cut(s)	575
AflIII	ACRYGT	2 cut(s)	1167, 2062
AhdI	GACNNNNNGTC	1 cut(s)	1171
AhlI	ACTAGT	2 cut(s)	1366, 2999
AjnI	CCWGG	9 cut(s)	343, 592, 797, 987, 1536, 1675, 1681, 2735, 3456
AjuI	GAANNNNNNNTTGG	2 cut(s)	2168, 2200
AloI	GAACNNNNNNTCC	4 cut(s)	1431, 1463, 3453, 3485
Alw21I	GWGCWC	2 cut(s)	524, 817
Alw26I	GTCTC	7 cut(s)	286, 460, 521, 608, 1734, 2785, 2815
Alw44I	GTGCAC	1 cut(s)	520
AlwI	GGATC	6 cut(s)	179, 192, 339, 762, 1554, 2940
AlwNI	CAGNNNCTG	8 cut(s)	97, 567, 866, 1301, 1682, 2285, 2783, 3200
AoxI	GGCC	5 cut(s)	39, 446, 890, 3081, 3454
ApaLI	GTGCAC	1 cut(s)	520
ApoI	RAATTY	6 cut(s)	377, 405, 1220, 1752, 2727, 3269
Asp700I	GAANNNNTTC	1 cut(s)	2624
AspLEI	GCGC	4 cut(s)	135, 643, 808, 3423
AspS9I	GGNCC	4 cut(s)	415, 616, 1269, 1679
AsuC2I	CCSGG	3 cut(s)	43, 70, 441
AsuII	TTCGAA	1 cut(s)	1992
AsuNHI	GCTAGC	1 cut(s)	2014
AvaII	GGWCC	4 cut(s)	415, 616, 1269, 1679
AxyI	CCTNAGG	2 cut(s)	620, 980
BaeGI	GKGCMC	4 cut(s)	524, 1504, 1944, 2804
BalI	TGGCCA	2 cut(s)	892, 3083
BamHI	GGATCC	1 cut(s)	184
BanI	GGYRCC	3 cut(s)	123, 2682, 3158
BauI	CACGAG	2 cut(s)	1113, 3312
BbsI	GAAGAC	1 cut(s)	2245
Bbv12I	GWGCWC	2 cut(s)	524, 817
BbvCI	CCTCAGC	2 cut(s)	109, 270
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	9 cut(s)	345, 594, 799, 989, 1538, 1677, 1683, 2737, 3458
BciVI	GTATCC	2 cut(s)	3031, 3244
BclI	TGATCA	2 cut(s)	2230, 2857
BcnI	CCSGG	3 cut(s)	43, 70, 441
BcoDI	GTCTC	7 cut(s)	286, 460, 521, 608, 1734, 2785, 2815
BcuI	ACTAGT	2 cut(s)	1366, 2999
BfaI	CTAG	5 cut(s)	1367, 2007, 2015, 3000, 3447
BfmI	CTRYAG	8 cut(s)	429, 1009, 1293, 1377, 1899, 1914, 2403, 2433
BfoI	RGCGCY	1 cut(s)	644
BfrI	CTTAAG	1 cut(s)	575
BfuAI	ACCTGC	3 cut(s)	1871, 2681, 3490
BfuI	GTATCC	2 cut(s)	3031, 3244
BglII	AGATCT	2 cut(s)	885, 2963
Bme18I	GGWCC	4 cut(s)	415, 616, 1269, 1679
BmeRI	GACNNNNNGTC	1 cut(s)	1171
BmgT120I	GGNCC	4 cut(s)	415, 616, 1269, 1679
BmrI	ACTGGG	1 cut(s)	1086
BmtI	GCTAGC	1 cut(s)	2018
BmuI	ACTGGG	1 cut(s)	1086
BpiI	GAAGAC	1 cut(s)	2245
BplI	GAGNNNNNCTC	4 cut(s)	266, 298, 472, 504
BpmI	CTGGAG	3 cut(s)	1659, 2103, 2760
Bpu10I	CCTNAGC	2 cut(s)	109, 270
Bpu14I	TTCGAA	1 cut(s)	1992
BpuEI	CTTGAG	3 cut(s)	1008, 1571, 3203
BpuMI	CCSGG	3 cut(s)	43, 70, 441
Bsa29I	ATCGAT	2 cut(s)	2260, 2767
BsaAI	YACGTR	2 cut(s)	160, 1655
BsaBI	GATNNNNATC	1 cut(s)	1458
BsaI	GGTCTC	3 cut(s)	460, 608, 2815
BsaJI	CCNNGG	7 cut(s)	68, 593, 828, 893, 2369, 2629, 3457
BsaWI	WCCGGW	1 cut(s)	1591
BsaXI	ACNNNNNCTCC	8 cut(s)	269, 299, 549, 579, 600, 630, 1387, 1417
Bsc4I	CCNNNNNNNGG	8 cut(s)	316, 424, 481, 599, 1543, 1682, 1838, 3200
Bse1I	ACTGG	8 cut(s)	240, 960, 1081, 1480, 1621, 1949, 2777, 3467
Bse21I	CCTNAGG	2 cut(s)	620, 980
Bse3DI	GCAATG	5 cut(s)	513, 1282, 1899, 2224, 3394
Bse8I	GATNNNNATC	1 cut(s)	1458
BseBI	CCWGG	9 cut(s)	345, 594, 799, 989, 1538, 1677, 1683, 2737, 3458
BseCI	ATCGAT	2 cut(s)	2260, 2767
BseDI	CCNNGG	7 cut(s)	68, 593, 828, 893, 2369, 2629, 3457
BseJI	GATNNNNATC	1 cut(s)	1458
BseLI	CCNNNNNNNGG	8 cut(s)	316, 424, 481, 599, 1543, 1682, 1838, 3200
BseMI	GCAATG	5 cut(s)	513, 1282, 1899, 2224, 3394
BseNI	ACTGG	8 cut(s)	240, 960, 1081, 1480, 1621, 1949, 2777, 3467
BseRI	GAGGAG	4 cut(s)	25, 274, 277, 287
BseSI	GKGCMC	4 cut(s)	524, 1504, 1944, 2804
BseYI	CCCAGC	1 cut(s)	2615
BsgI	GTGCAG	4 cut(s)	1199, 1899, 2175, 2809
Bsh1236I	CGCG	2 cut(s)	424, 3421
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	5 cut(s)	41, 448, 892, 3083, 3456
BshNI	GGYRCC	3 cut(s)	123, 2682, 3158
BshVI	ATCGAT	2 cut(s)	2260, 2767
BsiEI	CGRYCG	1 cut(s)	445
BsiHKAI	GWGCWC	2 cut(s)	524, 817
BsiSI	CCGG	4 cut(s)	42, 70, 441, 1592
BslFI	GGGAC	3 cut(s)	401, 1255, 2561
BslI	CCNNNNNNNGG	8 cut(s)	316, 424, 481, 599, 1543, 1682, 1838, 3200
BsmAI	GTCTC	7 cut(s)	286, 460, 521, 608, 1734, 2785, 2815
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	3 cut(s)	401, 1255, 2561
BsnI	GGCC	5 cut(s)	41, 448, 892, 3083, 3456
Bso31I	GGTCTC	3 cut(s)	460, 608, 2815
Bsp119I	TTCGAA	1 cut(s)	1992
Bsp1286I	GDGCHC	5 cut(s)	524, 817, 1504, 1944, 2804
Bsp1407I	TGTACA	2 cut(s)	1403, 2887
Bsp19I	CCATGG	3 cut(s)	828, 893, 2369
BspANI	GGCC	5 cut(s)	41, 448, 892, 3083, 3456
BspDI	ATCGAT	2 cut(s)	2260, 2767
BspFNI	CGCG	2 cut(s)	424, 3421
BspHI	TCATGA	2 cut(s)	337, 3244
BspMAI	CTGCAG	7 cut(s)	433, 1013, 1297, 1381, 1903, 2407, 2437
BspMI	ACCTGC	3 cut(s)	1871, 2681, 3490
BspOI	GCTAGC	1 cut(s)	2018
BspPI	GGATC	6 cut(s)	179, 192, 339, 762, 1554, 2940
BspQI	GCTCTTC	2 cut(s)	1780, 3129
BspT104I	TTCGAA	1 cut(s)	1992
BspT107I	GGYRCC	3 cut(s)	123, 2682, 3158
BspTI	CTTAAG	1 cut(s)	575
BspTNI	GGTCTC	3 cut(s)	460, 608, 2815
BsrBI	CCGCTC	2 cut(s)	717, 1398
BsrDI	GCAATG	5 cut(s)	513, 1282, 1899, 2224, 3394
BsrGI	TGTACA	2 cut(s)	1403, 2887
BsrI	ACTGG	8 cut(s)	240, 960, 1081, 1480, 1621, 1949, 2777, 3467
BssECI	CCNNGG	7 cut(s)	68, 593, 828, 893, 2369, 2629, 3457
BssSI	CACGAG	2 cut(s)	1113, 3312
BssT1I	CCWWGG	4 cut(s)	828, 893, 2369, 2629
Bst2BI	CACGAG	2 cut(s)	1113, 3312
Bst2UI	CCWGG	9 cut(s)	345, 594, 799, 989, 1538, 1677, 1683, 2737, 3458
Bst6I	CTCTTC	3 cut(s)	1780, 3129, 3243
BstAFI	CTTAAG	1 cut(s)	575
BstAPI	GCANNNNNTGC	2 cut(s)	130, 1898
BstAUI	TGTACA	2 cut(s)	1403, 2887
BstBAI	YACGTR	2 cut(s)	160, 1655
BstBI	TTCGAA	1 cut(s)	1992
BstDSI	CCRYGG	3 cut(s)	828, 893, 2369
BstFNI	CGCG	2 cut(s)	424, 3421
BstH2I	RGCGCY	1 cut(s)	644
BstHHI	GCGC	4 cut(s)	135, 643, 808, 3423
BstMAI	GTCTC	7 cut(s)	286, 460, 521, 608, 1734, 2785, 2815
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	9 cut(s)	130, 141, 321, 799, 812, 1298, 1898, 1948, 2696
BstNI	CCWGG	9 cut(s)	345, 594, 799, 989, 1538, 1677, 1683, 2737, 3458
BstNSI	RCATGY	2 cut(s)	1171, 2838
BstSFI	CTRYAG	8 cut(s)	429, 1009, 1293, 1377, 1899, 1914, 2403, 2433
BstSLI	GKGCMC	4 cut(s)	524, 1504, 1944, 2804
BstUI	CGCG	2 cut(s)	424, 3421
BstV2I	GAAGAC	1 cut(s)	2245
BstX2I	RGATCY	5 cut(s)	184, 885, 1546, 2945, 2963
BstYI	RGATCY	5 cut(s)	184, 885, 1546, 2945, 2963
Bsu15I	ATCGAT	2 cut(s)	2260, 2767
Bsu36I	CCTNAGG	2 cut(s)	620, 980
BsuI	GTATCC	2 cut(s)	3031, 3244
BsuRI	GGCC	5 cut(s)	41, 448, 892, 3083, 3456
BsuTUI	ATCGAT	2 cut(s)	2260, 2767
BtgI	CCRYGG	3 cut(s)	828, 893, 2369
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	7 cut(s)	247, 438, 1430, 1487, 1942, 2860, 3114
BveI	ACCTGC	3 cut(s)	1871, 2681, 3490
CaiI	CAGNNNCTG	8 cut(s)	97, 567, 866, 1301, 1682, 2285, 2783, 3200
CciI	TCATGA	2 cut(s)	337, 3244
CfoI	GCGC	4 cut(s)	135, 643, 808, 3423
Cfr13I	GGNCC	4 cut(s)	415, 616, 1269, 1679
ClaI	ATCGAT	2 cut(s)	2260, 2767
CsiI	ACCWGGT	1 cut(s)	1681
Csp6I	GTAC	8 cut(s)	161, 277, 1074, 1110, 1404, 1421, 2375, 2888
CspCI	CAANNNNNGTGG	4 cut(s)	459, 494, 3278, 3313
CviQI	GTAC	8 cut(s)	161, 277, 1074, 1110, 1404, 1421, 2375, 2888
DraI	TTTAAA	1 cut(s)	3091
DriI	GACNNNNNGTC	1 cut(s)	1171
EaeI	YGGCCR	3 cut(s)	39, 890, 3081
Eam1104I	CTCTTC	3 cut(s)	1780, 3129, 3243
Eam1105I	GACNNNNNGTC	1 cut(s)	1171
EarI	CTCTTC	3 cut(s)	1780, 3129, 3243
EciI	GGCGGA	2 cut(s)	54, 411
Eco130I	CCWWGG	4 cut(s)	828, 893, 2369, 2629
Eco31I	GGTCTC	3 cut(s)	460, 608, 2815
Eco47I	GGWCC	4 cut(s)	415, 616, 1269, 1679
Eco57I	CTGAAG	1 cut(s)	2469
Eco81I	CCTNAGG	2 cut(s)	620, 980
EcoO109I	RGGNCCY	3 cut(s)	415, 616, 1679
EcoRI	GAATTC	2 cut(s)	377, 2727
EcoRII	CCWGG	9 cut(s)	343, 592, 797, 987, 1536, 1675, 1681, 2735, 3456
EcoT14I	CCWWGG	4 cut(s)	828, 893, 2369, 2629
EcoT22I	ATGCAT	4 cut(s)	37, 974, 2836, 2840
ErhI	CCWWGG	4 cut(s)	828, 893, 2369, 2629
Esp3I	CGTCTC	1 cut(s)	286
FaqI	GGGAC	3 cut(s)	401, 1255, 2561
FauI	CCCGC	3 cut(s)	417, 710, 1280
FbaI	TGATCA	2 cut(s)	2230, 2857
FblI	GTMKAC	1 cut(s)	2399
FspBI	CTAG	5 cut(s)	1367, 2007, 2015, 3000, 3447
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	4 cut(s)	134, 642, 807, 3422
GsaI	CCCAGC	1 cut(s)	2619
GsuI	CTGGAG	3 cut(s)	1659, 2103, 2760
HaeII	RGCGCY	1 cut(s)	644
HaeIII	GGCC	5 cut(s)	41, 448, 892, 3083, 3456
HapII	CCGG	4 cut(s)	42, 70, 441, 1592
HhaI	GCGC	4 cut(s)	135, 643, 808, 3423
Hin6I	GCGC	4 cut(s)	133, 641, 806, 3421
HinP1I	GCGC	4 cut(s)	133, 641, 806, 3421
HincII	GTYRAC	2 cut(s)	1165, 2410
HindII	GTYRAC	2 cut(s)	1165, 2410
HpaI	GTTAAC	1 cut(s)	2410
HpaII	CCGG	4 cut(s)	42, 70, 441, 1592
Hpy99I	CGWCG	4 cut(s)	23, 209, 1234, 1237
HpyCH4IV	ACGT	7 cut(s)	159, 171, 279, 1654, 1699, 1996, 2064
HpyF10VI	GCNNNNNNNGC	9 cut(s)	130, 141, 321, 799, 812, 1298, 1898, 1948, 2696
HpySE526I	ACGT	7 cut(s)	159, 171, 279, 1654, 1699, 1996, 2064
HspAI	GCGC	4 cut(s)	133, 641, 806, 3421
KflI	GGGWCCC	1 cut(s)	415
Ksp22I	TGATCA	2 cut(s)	2230, 2857
KspAI	GTTAAC	1 cut(s)	2410
LguI	GCTCTTC	2 cut(s)	1780, 3129
LmnI	GCTCC	8 cut(s)	67, 714, 820, 984, 1289, 1395, 2084, 2779
MabI	ACCWGGT	1 cut(s)	1681
MaeI	CTAG	5 cut(s)	1367, 2007, 2015, 3000, 3447
MaeII	ACGT	7 cut(s)	159, 171, 279, 1654, 1699, 1996, 2064
MaeIII	GTNAC	8 cut(s)	14, 991, 1529, 2180, 2741, 2845, 3107, 3187
MbiI	CCGCTC	2 cut(s)	717, 1398
MflI	RGATCY	5 cut(s)	184, 885, 1546, 2945, 2963
MhlI	GDGCHC	5 cut(s)	524, 817, 1504, 1944, 2804
MlsI	TGGCCA	2 cut(s)	892, 3083
MluNI	TGGCCA	2 cut(s)	892, 3083
MlyI	GAGTC	3 cut(s)	567, 2157, 3422
MmeI	TCCRAC	6 cut(s)	228, 255, 276, 1591, 2047, 3462
Mox20I	TGGCCA	2 cut(s)	892, 3083
Mph1103I	ATGCAT	4 cut(s)	37, 974, 2836, 2840
MroXI	GAANNNNTTC	1 cut(s)	2624
MscI	TGGCCA	2 cut(s)	892, 3083
MslI	CAYNNNNRTG	5 cut(s)	260, 726, 833, 2563, 2843
Msp20I	TGGCCA	2 cut(s)	892, 3083
MspA1I	CMGCKG	4 cut(s)	1826, 2285, 2390, 3200
MspCI	CTTAAG	1 cut(s)	575
MspI	CCGG	4 cut(s)	42, 70, 441, 1592
MvaI	CCWGG	9 cut(s)	345, 594, 799, 989, 1538, 1677, 1683, 2737, 3458
MvnI	CGCG	2 cut(s)	424, 3421
MwoI	GCNNNNNNNGC	9 cut(s)	130, 141, 321, 799, 812, 1298, 1898, 1948, 2696
NciI	CCSGG	3 cut(s)	43, 70, 441
NcoI	CCATGG	3 cut(s)	828, 893, 2369
NheI	GCTAGC	1 cut(s)	2014
NmeAIII	GCCGAG	1 cut(s)	1334
NmuCI	GTSAC	7 cut(s)	14, 1529, 2180, 2741, 2845, 3107, 3187
NsbI	TGCGCA	1 cut(s)	134
NsiI	ATGCAT	4 cut(s)	37, 974, 2836, 2840
NspI	RCATGY	2 cut(s)	1171, 2838
NspV	TTCGAA	1 cut(s)	1992
PaeI	GCATGC	1 cut(s)	2838
PagI	TCATGA	2 cut(s)	337, 3244
PciI	ACATGT	1 cut(s)	1167
PciSI	GCTCTTC	2 cut(s)	1780, 3129
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 2764
PdmI	GAANNNNTTC	1 cut(s)	2624
PfeI	GAWTC	7 cut(s)	197, 571, 653, 899, 2142, 2655, 3381
PflMI	CCANNNNNTGG	4 cut(s)	1543, 1682, 1838, 3200
PfoI	TCCNGGA	1 cut(s)	1675
PleI	GAGTC	3 cut(s)	566, 2156, 3422
PpsI	GAGTC	3 cut(s)	566, 2156, 3422
Ppu21I	YACGTR	2 cut(s)	160, 1655
PpuMI	RGGWCCY	3 cut(s)	415, 616, 1679
PscI	ACATGT	1 cut(s)	1167
Psp1406I	AACGTT	1 cut(s)	171
Psp5II	RGGWCCY	3 cut(s)	415, 616, 1679
Psp6I	CCWGG	9 cut(s)	343, 592, 797, 987, 1536, 1675, 1681, 2735, 3456
PspFI	CCCAGC	1 cut(s)	2615
PspGI	CCWGG	9 cut(s)	343, 592, 797, 987, 1536, 1675, 1681, 2735, 3456
PspPI	GGNCC	4 cut(s)	415, 616, 1269, 1679
PspPPI	RGGWCCY	3 cut(s)	415, 616, 1679
PstI	CTGCAG	7 cut(s)	433, 1013, 1297, 1381, 1903, 2407, 2437
PstNI	CAGNNNCTG	8 cut(s)	97, 567, 866, 1301, 1682, 2285, 2783, 3200
PsuI	RGATCY	5 cut(s)	184, 885, 1546, 2945, 2963
PvuII	CAGCTG	3 cut(s)	2285, 2390, 3200
RsaI	GTAC	8 cut(s)	162, 278, 1075, 1111, 1405, 1422, 2376, 2889
RsaNI	GTAC	8 cut(s)	161, 277, 1074, 1110, 1404, 1421, 2375, 2888
RseI	CAYNNNNRTG	5 cut(s)	260, 726, 833, 2563, 2843
SapI	GCTCTTC	2 cut(s)	1780, 3129
Sau96I	GGNCC	4 cut(s)	415, 616, 1269, 1679
SchI	GAGTC	3 cut(s)	567, 2157, 3422
SduI	GDGCHC	5 cut(s)	524, 817, 1504, 1944, 2804
SexAI	ACCWGGT	1 cut(s)	1681
SfcI	CTRYAG	8 cut(s)	429, 1009, 1293, 1377, 1899, 1914, 2403, 2433
SfuI	TTCGAA	1 cut(s)	1992
SinI	GGWCC	4 cut(s)	415, 616, 1269, 1679
SmiMI	CAYNNNNRTG	5 cut(s)	260, 726, 833, 2563, 2843
SmlI	CTYRAG	4 cut(s)	575, 1023, 1550, 3182
SmoI	CTYRAG	4 cut(s)	575, 1023, 1550, 3182
SpeI	ACTAGT	2 cut(s)	1366, 2999
SphI	GCATGC	1 cut(s)	2838
SspMI	CTAG	5 cut(s)	1367, 2007, 2015, 3000, 3447
StyI	CCWWGG	4 cut(s)	828, 893, 2369, 2629
TaiI	ACGT	7 cut(s)	162, 174, 282, 1657, 1702, 1999, 2067
TaqI	TCGA	6 cut(s)	147, 1229, 1992, 2242, 2260, 2767
TatI	WGTACW	3 cut(s)	1073, 1403, 2887
TauI	GCSGC	3 cut(s)	396, 2100, 2217
TfiI	GAWTC	7 cut(s)	197, 571, 653, 899, 2142, 2655, 3381
TscAI	CASTG	7 cut(s)	247, 438, 1430, 1487, 1949, 2860, 3121
TseFI	GTSAC	7 cut(s)	14, 1529, 2180, 2741, 2845, 3107, 3187
Tsp45I	GTSAC	7 cut(s)	14, 1529, 2180, 2741, 2845, 3107, 3187
TspGWI	ACGGA	3 cut(s)	1373, 3226, 3374
TspRI	CASTG	7 cut(s)	247, 438, 1430, 1487, 1949, 2860, 3121
Van91I	CCANNNNNTGG	4 cut(s)	1543, 1682, 1838, 3200
Vha464I	CTTAAG	1 cut(s)	575
VneI	GTGCAC	1 cut(s)	520
VpaK11BI	GGWCC	4 cut(s)	415, 616, 1269, 1679
XapI	RAATTY	6 cut(s)	377, 405, 1220, 1752, 2727, 3269
XbaI	TCTAGA	1 cut(s)	3446
XceI	RCATGY	2 cut(s)	1171, 2838
XcmI	CCANNNNNNNNNTGG	2 cut(s)	98, 682
XmiI	GTMKAC	1 cut(s)	2399
XmnI	GAANNNNTTC	1 cut(s)	2624
XspI	CTAG	5 cut(s)	1367, 2007, 2015, 3000, 3447
Zsp2I	ATGCAT	4 cut(s)	37, 974, 2836, 2840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.