Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8238923.1

Orthogroup ID

OG0004616

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 769

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8238923.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ggatgctcgtacacgagagcttgtgaaagtctttaatgtagatggtcagattgagaatagagttgacatgtcgtctgtgcagcaagatcaagcatcagtagaagatgagatgaaggtgaaatttgtttctacgacaaaaaaggagaaatcgcagggctttttgcaacggtcccgcaatgctataatgggagctgcagatgctgttcgccgagttgcgaccagaggggcaggggcatttgtagaagatgccaagaaaacggaagcactagtgctaactgcagatggcatgatatggagcggatgtacaaatggtttattggtacagtgggatgggaatggaaaccgtgttcaagattttaatcaccatccttctgctgtccagtgcttttgcacttttggggcacgcatatatgtaggatatgcgagtggtcacattcaggtcttggatcttgagggaaatctgattgcaagatgggttgcacacagtagtccggtcataaaattggcagttggaactggttgtatttatagcttggctactcacggtggaatacgtggatggaacatgaaatctccaggacctagtgatgacatactacgttctgaattggctgctaaagaaagtatatatactagaagagacaatgttagaattttgattggctcatggaatgttggtcaaggaagagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

230

Amino Acids

25.11

Weight (kDa)

8.93

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05630 AT1G05630 AT1G05630 AT2G31830 AT2G31830 AT2G31830 AT2G43900 AT2G43900
fragaria_vesca	FvH4_5g18650 FvH4_5g18650 FvH4_5g18650 FvH4_5g18650
malus_domestica	MD00G1087600.v1.1 MD15G1143600.v1.1
prunus_persica	Prupe.7G062000_v2.0.a1
pyrus_communis	pycom15g12950 pycom15g12960 pycom15g12970 pycom290g00230
rosa_chinensis	RchiOBHm_Chr7g0176851
rosa_laevigata	RLG00000005579
rosa_multiflora	Rmu_co8238923.1_g000001 Rmu_sc0005310.1_g000054 Rmu_sc0027976.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276340
rosa_rugosa	Rorug06G0401200
rosa_samantha	Rh7AG000500 Rh7BG000900 Rh7CG000500 Rh7DG000700
rosa_wichuraiana	Rw7G000040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	298
AciI	CCGC	2 cut(s)	173, 298
AclWI	GGATC	1 cut(s)	454
AcsI	RAATTY	2 cut(s)	120, 652
AfaI	GTAC	3 cut(s)	11, 305, 322
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	351
AhdI	GACNNNNNGTC	1 cut(s)	71
AhlI	ACTAGT	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	575
AloI	GAACNNNNNNTCC	2 cut(s)	331, 363
AluBI	AGCT	3 cut(s)	20, 192, 532
AluI	AGCT	3 cut(s)	20, 192, 532
Alw26I	GTCTC	1 cut(s)	634
AlwI	GGATC	1 cut(s)	454
AlwNI	CAGNNNCTG	1 cut(s)	201
ApeKI	GCWGC	3 cut(s)	80, 192, 612
ApoI	RAATTY	2 cut(s)	120, 652
AspS9I	GGNCC	2 cut(s)	169, 579
AsuHPI	GGTGA	2 cut(s)	128, 354
AvaII	GGWCC	2 cut(s)	169, 579
BaeGI	GKGCMC	1 cut(s)	404
BauI	CACGAG	1 cut(s)	13
BbvI	GCAGC	3 cut(s)	92, 179, 599
BccI	CCATC	6 cut(s)	36, 276, 324, 373, 466, 553
BciT130I	CCWGG	1 cut(s)	577
BcoDI	GTCTC	1 cut(s)	634
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	3 cut(s)	267, 583, 634
BfmI	CTRYAG	2 cut(s)	193, 277
BisI	GCNGC	3 cut(s)	81, 193, 613
BlsI	GCNGC	3 cut(s)	82, 194, 614
Bme1390I	CCNGG	1 cut(s)	577
Bme18I	GGWCC	2 cut(s)	169, 579
BmeRI	GACNNNNNGTC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	169, 579
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	577
BmsI	GCATC	3 cut(s)	102, 188, 236
BpmI	CTGGAG	1 cut(s)	559
BpuEI	CTTGAG	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bse1I	ACTGG	2 cut(s)	380, 521
Bse3DI	GCAATG	1 cut(s)	182
Bse8I	GATNNNNATC	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	577
BseGI	GGATG	5 cut(s)	8, 306, 335, 365, 564
BseJI	GATNNNNATC	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	182
BseNI	ACTGG	2 cut(s)	380, 521
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	3 cut(s)	92, 179, 599
BsgI	GTGCAG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	634
BsmFI	GGGAC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	86, 446
BspACI	CCGC	2 cut(s)	173, 298
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	2 cut(s)	197, 281
BspPI	GGATC	1 cut(s)	454
BspQI	GCTCTTC	1 cut(s)	680
BsrBI	CCGCTC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	380, 521
BssMI	GATC	2 cut(s)	86, 446
BssSI	CACGAG	1 cut(s)	13
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	5 cut(s)	169, 325, 345, 486, 546
Bst6I	CTCTTC	2 cut(s)	632, 680
BstAUI	TGTACA	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	404
BstF5I	GGATG	5 cut(s)	8, 306, 335, 365, 564
BstKTI	GATC	2 cut(s)	89, 449
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	2 cut(s)	86, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	577
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	575
BstSFI	CTRYAG	2 cut(s)	193, 277
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	3 cut(s)	92, 179, 599
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BtsCI	GGATG	5 cut(s)	8, 306, 335, 365, 564
BtsIMutI	CAGTG	2 cut(s)	330, 387
Cac8I	GCNNGC	1 cut(s)	404
CaiI	CAGNNNCTG	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	169, 579
Csp6I	GTAC	3 cut(s)	10, 304, 321
CviAII	CATG	4 cut(s)	68, 287, 566, 667
CviJI	RGCY	7 cut(s)	20, 157, 192, 532, 537, 612, 664
CviKI_1	RGCY	7 cut(s)	20, 157, 192, 532, 537, 612, 664
CviQI	GTAC	3 cut(s)	10, 304, 321
DpnI	GATC	2 cut(s)	88, 448
DpnII	GATC	2 cut(s)	86, 446
DriI	GACNNNNNGTC	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	632, 680
Eam1105I	GACNNNNNGTC	1 cut(s)	71
EarI	CTCTTC	2 cut(s)	632, 680
Eco47I	GGWCC	2 cut(s)	169, 579
EcoO109I	RGGNCCY	1 cut(s)	579
EcoRII	CCWGG	1 cut(s)	575
FaeI	CATG	4 cut(s)	71, 290, 569, 670
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	4 cut(s)	67, 286, 565, 666
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	81, 193, 613
FokI	GGATG	5 cut(s)	15, 313, 342, 352, 571
Fsp4HI	GCNGC	3 cut(s)	81, 193, 613
FspBI	CTAG	3 cut(s)	267, 583, 634
GluI	GCNGC	3 cut(s)	81, 193, 613
GsuI	CTGGAG	1 cut(s)	559
HapII	CCGG	1 cut(s)	492
Hin1II	CATG	4 cut(s)	71, 290, 569, 670
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	2 cut(s)	128, 354
Hpy166II	GTNNAC	2 cut(s)	12, 65
Hpy188I	TCNGA	3 cut(s)	49, 463, 605
Hpy188III	TCNNGA	2 cut(s)	351, 450
Hpy8I	GTNNAC	2 cut(s)	12, 65
HpyAV	CCTTC	2 cut(s)	107, 379
HpyCH4III	ACNGT	5 cut(s)	169, 325, 345, 486, 546
HpyCH4IV	ACGT	2 cut(s)	554, 599
HpyCH4V	TGCA	7 cut(s)	80, 164, 195, 279, 391, 468, 480
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpySE526I	ACGT	2 cut(s)	554, 599
Hsp92II	CATG	4 cut(s)	71, 290, 569, 670
Kzo9I	GATC	2 cut(s)	86, 446
LguI	GCTCTTC	1 cut(s)	680
LmnI	GCTCC	2 cut(s)	189, 295
LpnPI	CCDG	9 cut(s)	138, 214, 233, 393, 423, 502, 505, 562, 589
Lsp1109I	GCAGC	3 cut(s)	92, 179, 599
LweI	GCATC	3 cut(s)	102, 188, 236
MaeI	CTAG	3 cut(s)	267, 583, 634
MaeII	ACGT	2 cut(s)	554, 599
MaeIII	GTNAC	1 cut(s)	429
MalI	GATC	2 cut(s)	88, 448
MbiI	CCGCTC	1 cut(s)	298
MboI	GATC	2 cut(s)	86, 446
MboII	GAAGA	3 cut(s)	114, 255, 649
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	4 cut(s)	120, 501, 606, 652
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	2 cut(s)	216, 446
MseI	TTAA	2 cut(s)	34, 358
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	577
MvaI	CCWGG	1 cut(s)	577
MwoI	GCNNNNNNNGC	1 cut(s)	198
NdeII	GATC	2 cut(s)	86, 446
NlaIII	CATG	4 cut(s)	71, 290, 569, 670
NlaIV	GGNNCC	1 cut(s)	171
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	429
NspI	RCATGY	1 cut(s)	71
PciI	ACATGT	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	680
PfoI	TCCNGGA	1 cut(s)	575
PkrI	GCNGC	3 cut(s)	82, 194, 614
Ppu21I	YACGTR	1 cut(s)	555
PpuMI	RGGWCCY	1 cut(s)	579
PscI	ACATGT	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	169, 579
PspPPI	RGGWCCY	1 cut(s)	579
PstI	CTGCAG	2 cut(s)	197, 281
PstNI	CAGNNNCTG	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	3 cut(s)	11, 305, 322
RsaNI	GTAC	3 cut(s)	10, 304, 321
SapI	GCTCTTC	1 cut(s)	680
SaqAI	TTAA	2 cut(s)	34, 358
SatI	GCNGC	3 cut(s)	81, 193, 613
Sau3AI	GATC	2 cut(s)	86, 446
Sau96I	GGNCC	2 cut(s)	169, 579
ScrFI	CCNGG	1 cut(s)	577
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	8 cut(s)	22, 118, 194, 442, 534, 557, 584, 602
SfaNI	GCATC	3 cut(s)	102, 188, 236
SfcI	CTRYAG	2 cut(s)	193, 277
SinI	GGWCC	2 cut(s)	169, 579
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
SpeI	ACTAGT	1 cut(s)	266
Sse9I	AATT	4 cut(s)	120, 501, 606, 652
SsiI	CCGC	2 cut(s)	173, 298
SspMI	CTAG	3 cut(s)	267, 583, 634
StyD4I	CCNGG	1 cut(s)	575
TaaI	ACNGT	5 cut(s)	169, 325, 345, 486, 546
TaiI	ACGT	2 cut(s)	557, 602
TasI	AATT	4 cut(s)	120, 501, 606, 652
TatI	WGTACW	1 cut(s)	303
Tru1I	TTAA	2 cut(s)	34, 358
Tru9I	TTAA	2 cut(s)	34, 358
TscAI	CASTG	2 cut(s)	330, 387
TseFI	GTSAC	1 cut(s)	429
TseI	GCWGC	3 cut(s)	80, 192, 612
Tsp45I	GTSAC	1 cut(s)	429
TspDTI	ATGAA	2 cut(s)	126, 582
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	2 cut(s)	330, 387
VpaK11BI	GGWCC	2 cut(s)	169, 579
XapI	RAATTY	2 cut(s)	120, 652
XceI	RCATGY	1 cut(s)	71
XspI	CTAG	3 cut(s)	267, 583, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.