Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004616

Physical Location & Seq

Genomic Coordinates Forward (+)

84743 .. 91204

Gene Structure 6462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG000900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2562 bp

ATGGACGAGAGGAGTGATGACGAGGACAAGGATGCATTGGCCGGGTTAAGCTCTGCCCCTGCTCCGCCCCGGAAATCGCACTCATTAAGCCAGCAACTGCGTGGAACCTCAGCTCAGAAACGGCACCAACTGCGCAAGCATAGCCTCGACGATGTCCACGTACCCATGAACGTTGTTAATGCGGATCCCTACTACGATTCTTCCGACGATGATTTCTTTCCCTACTCGTCCAACACCACCAGTGCATCATCCAACATGACTATGAGTGCTGAGGAGTACGTATCCTCCTCGCATAGATTAGACCAAAGCCTGTGCATGGAGGGTGGTGTGGATCATCATGAACCAGGCAGCAGCCGGGAAATCCAGCCATTACCTGAATTCATAGGGAGTGGCGGCGGAACAGGAATTTTTAGGGTCCCAACGCGGGCTGCAGTGCATCCCGGTCGGCCTCCATGCTTGGAGTTGAGACCACACCCTTTGAGGGAAACTCAGGTAGGGAGGTTCCTTAGAACCATTGCATGCACCGAGACACAACTCTGGGCTGGTCAGGAGGGTGGAGTCAGGGTCTGGAATCTTAAGGATGTATTTGAACCTGGGTGCGGTCTCGGAGGCAGGGTCCTGAGGGGTGATGAGGATGCAGCGCCTTACTATGAATCTGCAAACACCTCTCCTGCCATGTTTTTGATGGTTGATGTTGGGAATAAGTTGATTTGGAGCGGGCATAAGGATGGCAAGATTAGGTCTTGGAAGATGGATCAGCCTTTGGATGCTTCTACTCCTTTTAAGGAAGGGCTTTCCTGGCAGGCGCACCGTGCTCCTGTTCTTGCCATGGTTATGACTTCTTATGGTGATATGTGGTCAGGTTCTGAGGGTGGTGTTATCAAGATCTGGCCATGGGAATCCATTGAAAAATCTCTTTCTCTAAAGCCAGAGGAAAGACACATGGCAGCTTTACTGGTGGAGAGGTCATGCATTGACCTTAGGAGCCAGGTTACTGTAAATGGTGTCTGCAGTATATCTTCTCAAGATGTCAAGTGTTTGTTATCTGATAATTTTAGAGCAAAAGTTTGGTGTACTGGGTCTATGTCCTTCTCATTGTGGGATGCTCGTACACGAGAGCTTGTGAAAGTCTTTAATGTAGATGGTCAGATTGAGAATAGAGTTGACATGTCGTCTGTGCAGCAAGATCAAGCATCAGTAGAAGATGAGATGAAGGTGAAATTTGTTTCGGCGACGAAAAAGGAGAAATCGCAGGGCTTTTTGCAACGGTCCCGCAATGCTATAATGGGAGCTGCAGATGCTGTTCGCCGAGTTGCGACCAGAGGGGCAGGGGCATTTGTAGAAGATGCCAAGAAAACGGAAGCACTAGTGCTAACTGCAGATGGCATGATATGGAGCGGATGTACAAATGGTTTATTGGTACAGTGGGATGGGAATGGAAACCGTGTTCAAGATTTTAATCACCATCCTTCTGCTGTCCAGTGCTTTTGCACTTTTGGGGCACGCATATATGTAGGATATGCGAGTGGTCACATTCAGGTCTTGGATCTTGAGGGAAATCTGATTGCAAGATGGGTTGCACACAGTAGTCCGGTCATAAAATTGGCAGTTGGAACTGGTTGTATTTATAGCTTGGCTACTCACGGTGGAATACGTGGATGGAACATGAAATCTCCAGGACCTAGTGATGACATACTACGTTCTGAATTGGCTGCTAAAGAAAGTATATATACTAGAAGAGACAATGTTAGAATTTTGATTGGTTCATGGAATGTTGGTCAAGGAAGAGCATCTCATGGTTCACTCATGTCATGGTTGGGTTCCGCTGTGCCAGATGTTGGTATTGTAGTTGTTGGGTTGCAAGAAGTAGAAATGGGTGCAGGTTTTCTTGCAATGTCTGCAGCAAAAGAAACTGTAGGGCTTGAAGGGAGTTCTGTTGGGCACTGGTGGCTGGATAATATAGGAAAGGCTTTAGAAGAAGGAAAAACTTTCGAACGTATGGGTTCTAGGCAGCTAGCAGGCTTGCTCATATCTCTTTGGGTAAGAAAAAATCTTAGAACACACGTTGGAGATATAGATGCTGGAGCAGTTCCATGCGGCTTTGGTCGTGCCATTGGCAACAAGGGAGGTGTAGGTTTGAGAATCAGAGTCTATGATCGGATAATGTGCTTTGTGAACTGTCACTTGGCTGCACATTTAGAAGCTGTCAATCGCCGCAATGCTGACTTTGATCACATTTATCGAAATATGGTCTTCAATCGGTCATCTCTACTTAACACAGCAGCTGGTATGATACCATACCTGTTTTTGTCTTGCTCTCTTGCCTTCTCTACATATTTATTTTGGCTGCTTTATTCTTCTGGCTTGCCATGGGTCCTCTCTCTTGCAGCTGGTGTGTCTACTGCTGTTAACACGGTTCGGACTACAAATGTATGTACTTGTTTCATTCACATGTATATATTTGCTCTTATCGATCCAAACACTGGTCTATCTTGTCCCTTTATCTATCTTAAATTCTTATCTTTATTAGCAAAGAGTACTTACAAGAAGTTATGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

853

Amino Acids

93.64

Weight (kDa)

7.56

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_IP5PC_F	PF23754	160 - 554	1e-230	IP5P C-F beta-propeller
Exo_endo_phos2	PF22669	589 - 756	2.1e-25	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05630 AT1G05630 AT1G05630 AT2G31830 AT2G31830 AT2G31830 AT2G43900 AT2G43900
fragaria_vesca	FvH4_5g18650 FvH4_5g18650 FvH4_5g18650 FvH4_5g18650
malus_domestica	MD00G1087600.v1.1 MD15G1143600.v1.1
prunus_persica	Prupe.7G062000_v2.0.a1
pyrus_communis	pycom15g12950 pycom15g12960 pycom15g12970 pycom290g00230
rosa_chinensis	RchiOBHm_Chr7g0176851
rosa_laevigata	RLG00000005579
rosa_multiflora	Rmu_co8238923.1_g000001 Rmu_sc0005310.1_g000054 Rmu_sc0027976.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276340
rosa_rugosa	Rorug06G0401200
rosa_samantha	Rh7AG000500 Rh7BG000900 Rh7CG000500 Rh7DG000700
rosa_wichuraiana	Rw7G000040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	1871
AccB1I	GGYRCC	1 cut(s)	123
AccB7I	CCANNNNNTGG	2 cut(s)	1838, 2483
AccBSI	CCGCTC	2 cut(s)	717, 1398
AccI	GTMKAC	1 cut(s)	2399
AccII	CGCG	1 cut(s)	424
AclI	AACGTT	1 cut(s)	171
AclWI	GGATC	6 cut(s)	179, 192, 339, 762, 1554, 2468
AcoI	YGGCCR	2 cut(s)	39, 890
AcsI	RAATTY	5 cut(s)	377, 405, 1220, 1752, 2513
AfaI	GTAC	8 cut(s)	162, 278, 1075, 1111, 1405, 1422, 2437, 2539
AfiI	CCNNNNNNNGG	6 cut(s)	316, 424, 481, 599, 1838, 2483
AflII	CTTAAG	1 cut(s)	575
AflIII	ACRYGT	3 cut(s)	1167, 2062, 2451
AgsI	TTSAA	5 cut(s)	590, 908, 1451, 1925, 2257
AhdI	GACNNNNNGTC	1 cut(s)	1171
AhlI	ACTAGT	1 cut(s)	1366
AjnI	CCWGG	5 cut(s)	343, 592, 797, 987, 1675
AjuI	GAANNNNNNNTTGG	2 cut(s)	2168, 2200
AloI	GAACNNNNNNTCC	2 cut(s)	1431, 1463
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	4 cut(s)	460, 521, 608, 1734
AlwI	GGATC	6 cut(s)	179, 192, 339, 762, 1554, 2468
AlwNI	CAGNNNCTG	5 cut(s)	97, 567, 866, 1301, 2285
AoxI	GGCC	3 cut(s)	39, 446, 890
ApoI	RAATTY	5 cut(s)	377, 405, 1220, 1752, 2513
AspLEI	GCGC	3 cut(s)	135, 643, 808
AspS9I	GGNCC	5 cut(s)	415, 616, 1269, 1679, 2374
AsuC2I	CCSGG	4 cut(s)	43, 70, 356, 441
AsuHPI	GGTGA	4 cut(s)	638, 860, 1228, 1454
AsuII	TTCGAA	1 cut(s)	1992
AsuNHI	GCTAGC	1 cut(s)	2014
AvaII	GGWCC	5 cut(s)	415, 616, 1269, 1679, 2374
AxyI	CCTNAGG	2 cut(s)	620, 980
BaeGI	GKGCMC	2 cut(s)	1504, 1944
BalI	TGGCCA	1 cut(s)	892
BamHI	GGATCC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	123
BauI	CACGAG	1 cut(s)	1113
BbsI	GAAGAC	1 cut(s)	2245
Bbv12I	GWGCWC	1 cut(s)	817
BbvCI	CCTCAGC	2 cut(s)	109, 270
BccI	CCATC	9 cut(s)	679, 722, 745, 1136, 1376, 1424, 1473, 1566, 1653
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	5 cut(s)	345, 594, 799, 989, 1677
BciVI	GTATCC	1 cut(s)	292
BclI	TGATCA	1 cut(s)	2230
BcnI	CCSGG	4 cut(s)	43, 70, 356, 441
BcoDI	GTCTC	4 cut(s)	460, 521, 608, 1734
BcuI	ACTAGT	1 cut(s)	1366
BfaI	CTAG	5 cut(s)	1367, 1683, 1734, 2007, 2015
BfmI	CTRYAG	6 cut(s)	429, 1009, 1293, 1377, 1899, 1914
BfoI	RGCGCY	1 cut(s)	644
BfrI	CTTAAG	1 cut(s)	575
BfuAI	ACCTGC	1 cut(s)	1871
BfuI	GTATCC	1 cut(s)	292
BglII	AGATCT	1 cut(s)	885
BmcAI	AGTACT	1 cut(s)	2539
Bme1390I	CCNGG	9 cut(s)	43, 70, 345, 356, 441, 594, 799, 989, 1677
Bme18I	GGWCC	5 cut(s)	415, 616, 1269, 1679, 2374
BmeRI	GACNNNNNGTC	1 cut(s)	1171
BmgT120I	GGNCC	5 cut(s)	415, 616, 1269, 1679, 2374
BmrFI	CCNGG	9 cut(s)	43, 70, 345, 356, 441, 594, 799, 989, 1677
BmrI	ACTGGG	1 cut(s)	1086
BmtI	GCTAGC	1 cut(s)	2018
BmuI	ACTGGG	1 cut(s)	1086
BpiI	GAAGAC	1 cut(s)	2245
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
BpmI	CTGGAG	2 cut(s)	1659, 2103
Bpu10I	CCTNAGC	2 cut(s)	109, 270
Bpu14I	TTCGAA	1 cut(s)	1992
BpuEI	CTTGAG	2 cut(s)	1008, 1571
BpuMI	CCSGG	4 cut(s)	43, 70, 356, 441
Bsa29I	ATCGAT	1 cut(s)	2472
BsaAI	YACGTR	3 cut(s)	160, 280, 1655
BsaBI	GATNNNNATC	1 cut(s)	1458
BsaI	GGTCTC	2 cut(s)	460, 608
BsaJI	CCNNGG	5 cut(s)	68, 593, 828, 893, 2369
BsaWI	WCCGGW	1 cut(s)	1591
BsaXI	ACNNNNNCTCC	8 cut(s)	269, 299, 549, 579, 600, 630, 1387, 1417
Bsc4I	CCNNNNNNNGG	6 cut(s)	316, 424, 481, 599, 1838, 2483
Bse1I	ACTGG	7 cut(s)	240, 960, 1081, 1480, 1621, 1949, 2488
Bse21I	CCTNAGG	2 cut(s)	620, 980
Bse3DI	GCAATG	4 cut(s)	513, 1282, 1899, 2224
Bse8I	GATNNNNATC	1 cut(s)	1458
BseBI	CCWGG	5 cut(s)	345, 594, 799, 989, 1677
BseCI	ATCGAT	1 cut(s)	2472
BseDI	CCNNGG	5 cut(s)	68, 593, 828, 893, 2369
BseJI	GATNNNNATC	1 cut(s)	1458
BseLI	CCNNNNNNNGG	6 cut(s)	316, 424, 481, 599, 1838, 2483
BseMI	GCAATG	4 cut(s)	513, 1282, 1899, 2224
BseMII	CTCAG	6 cut(s)	123, 128, 261, 503, 611, 858
BseNI	ACTGG	7 cut(s)	240, 960, 1081, 1480, 1621, 1949, 2488
BseRI	GAGGAG	3 cut(s)	25, 277, 287
BseSI	GKGCMC	2 cut(s)	1504, 1944
BsgI	GTGCAG	3 cut(s)	1199, 1899, 2175
Bsh1236I	CGCG	1 cut(s)	424
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	3 cut(s)	41, 448, 892
BshNI	GGYRCC	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	2472
BsiEI	CGRYCG	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	817
BsiSI	CCGG	5 cut(s)	42, 70, 355, 441, 1592
BslFI	GGGAC	3 cut(s)	401, 1255, 2481
BslI	CCNNNNNNNGG	6 cut(s)	316, 424, 481, 599, 1838, 2483
BsmAI	GTCTC	4 cut(s)	460, 521, 608, 1734
BsmFI	GGGAC	3 cut(s)	401, 1255, 2481
BsnI	GGCC	3 cut(s)	41, 448, 892
Bso31I	GGTCTC	2 cut(s)	460, 608
Bsp119I	TTCGAA	1 cut(s)	1992
Bsp1286I	GDGCHC	3 cut(s)	817, 1504, 1944
Bsp1407I	TGTACA	1 cut(s)	1403
Bsp143I	GATC	9 cut(s)	184, 331, 754, 885, 1186, 1546, 2155, 2230, 2473
Bsp19I	CCATGG	3 cut(s)	828, 893, 2369
BspANI	GGCC	3 cut(s)	41, 448, 892
BspCNI	CTCAG	6 cut(s)	122, 127, 262, 502, 612, 859
BspDI	ATCGAT	1 cut(s)	2472
BspFNI	CGCG	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	337
BspMAI	CTGCAG	5 cut(s)	433, 1013, 1297, 1381, 1903
BspMI	ACCTGC	1 cut(s)	1871
BspOI	GCTAGC	1 cut(s)	2018
BspPI	GGATC	6 cut(s)	179, 192, 339, 762, 1554, 2468
BspQI	GCTCTTC	1 cut(s)	1780
BspT104I	TTCGAA	1 cut(s)	1992
BspT107I	GGYRCC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	575
BspTNI	GGTCTC	2 cut(s)	460, 608
BsrBI	CCGCTC	2 cut(s)	717, 1398
BsrDI	GCAATG	4 cut(s)	513, 1282, 1899, 2224
BsrGI	TGTACA	1 cut(s)	1403
BsrI	ACTGG	7 cut(s)	240, 960, 1081, 1480, 1621, 1949, 2488
BssECI	CCNNGG	5 cut(s)	68, 593, 828, 893, 2369
BssMI	GATC	9 cut(s)	184, 331, 754, 885, 1186, 1546, 2155, 2230, 2473
BssSI	CACGAG	1 cut(s)	1113
BssT1I	CCWWGG	3 cut(s)	828, 893, 2369
Bst2BI	CACGAG	1 cut(s)	1113
Bst2UI	CCWGG	5 cut(s)	345, 594, 799, 989, 1677
Bst6I	CTCTTC	2 cut(s)	1732, 1780
BstAFI	CTTAAG	1 cut(s)	575
BstAPI	GCANNNNNTGC	2 cut(s)	130, 1898
BstAUI	TGTACA	1 cut(s)	1403
BstBAI	YACGTR	3 cut(s)	160, 280, 1655
BstBI	TTCGAA	1 cut(s)	1992
BstDEI	CTNAG	9 cut(s)	109, 114, 270, 489, 506, 620, 867, 980, 2054
BstDSI	CCRYGG	3 cut(s)	828, 893, 2369
BstFNI	CGCG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	644
BstHHI	GCGC	3 cut(s)	135, 643, 808
BstKTI	GATC	9 cut(s)	187, 334, 757, 888, 1189, 1549, 2158, 2233, 2476
BstMAI	GTCTC	4 cut(s)	460, 521, 608, 1734
BstMBI	GATC	9 cut(s)	184, 331, 754, 885, 1186, 1546, 2155, 2230, 2473
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	7 cut(s)	130, 141, 799, 812, 1298, 1898, 1948
BstNI	CCWGG	5 cut(s)	345, 594, 799, 989, 1677
BstNSI	RCATGY	3 cut(s)	522, 1171, 2455
BstSCI	CCNGG	9 cut(s)	41, 68, 343, 354, 439, 592, 797, 987, 1675
BstSFI	CTRYAG	6 cut(s)	429, 1009, 1293, 1377, 1899, 1914
BstSLI	GKGCMC	2 cut(s)	1504, 1944
BstSNI	TACGTA	1 cut(s)	280
BstUI	CGCG	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	2245
BstX2I	RGATCY	3 cut(s)	184, 885, 1546
BstYI	RGATCY	3 cut(s)	184, 885, 1546
Bsu15I	ATCGAT	1 cut(s)	2472
Bsu36I	CCTNAGG	2 cut(s)	620, 980
BsuI	GTATCC	1 cut(s)	292
BsuRI	GGCC	3 cut(s)	41, 448, 892
BsuTUI	ATCGAT	1 cut(s)	2472
BtgI	CCRYGG	3 cut(s)	828, 893, 2369
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	6 cut(s)	247, 438, 1430, 1487, 1942, 2481
BveI	ACCTGC	1 cut(s)	1871
CaiI	CAGNNNCTG	5 cut(s)	97, 567, 866, 1301, 2285
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	3 cut(s)	135, 643, 808
Cfr13I	GGNCC	5 cut(s)	415, 616, 1269, 1679, 2374
ClaI	ATCGAT	1 cut(s)	2472
Csp6I	GTAC	8 cut(s)	161, 277, 1074, 1110, 1404, 1421, 2436, 2538
CspCI	CAANNNNNGTGG	2 cut(s)	459, 494
CviQI	GTAC	8 cut(s)	161, 277, 1074, 1110, 1404, 1421, 2436, 2538
DdeI	CTNAG	9 cut(s)	109, 114, 270, 489, 506, 620, 867, 980, 2054
DpnI	GATC	9 cut(s)	186, 333, 756, 887, 1188, 1548, 2157, 2232, 2475
DpnII	GATC	9 cut(s)	184, 331, 754, 885, 1186, 1546, 2155, 2230, 2473
DriI	GACNNNNNGTC	1 cut(s)	1171
EaeI	YGGCCR	2 cut(s)	39, 890
Eam1104I	CTCTTC	2 cut(s)	1732, 1780
Eam1105I	GACNNNNNGTC	1 cut(s)	1171
EarI	CTCTTC	2 cut(s)	1732, 1780
EciI	GGCGGA	2 cut(s)	54, 411
Eco105I	TACGTA	1 cut(s)	280
Eco130I	CCWWGG	3 cut(s)	828, 893, 2369
Eco31I	GGTCTC	2 cut(s)	460, 608
Eco47I	GGWCC	5 cut(s)	415, 616, 1269, 1679, 2374
Eco81I	CCTNAGG	2 cut(s)	620, 980
EcoO109I	RGGNCCY	4 cut(s)	415, 616, 1679, 2374
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	5 cut(s)	343, 592, 797, 987, 1675
EcoT14I	CCWWGG	3 cut(s)	828, 893, 2369
EcoT22I	ATGCAT	2 cut(s)	37, 974
ErhI	CCWWGG	3 cut(s)	828, 893, 2369
FaqI	GGGAC	3 cut(s)	401, 1255, 2481
FauI	CCCGC	3 cut(s)	417, 710, 1280
FbaI	TGATCA	1 cut(s)	2230
FblI	GTMKAC	1 cut(s)	2399
FspBI	CTAG	5 cut(s)	1367, 1683, 1734, 2007, 2015
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	3 cut(s)	134, 642, 807
GsuI	CTGGAG	2 cut(s)	1659, 2103
HaeII	RGCGCY	1 cut(s)	644
HaeIII	GGCC	3 cut(s)	41, 448, 892
HapII	CCGG	5 cut(s)	42, 70, 355, 441, 1592
HhaI	GCGC	3 cut(s)	135, 643, 808
Hin6I	GCGC	3 cut(s)	133, 641, 806
HinP1I	GCGC	3 cut(s)	133, 641, 806
HincII	GTYRAC	2 cut(s)	1165, 2410
HindII	GTYRAC	2 cut(s)	1165, 2410
HinfI	GANTC	7 cut(s)	197, 558, 571, 653, 899, 2142, 2148
HpaI	GTTAAC	1 cut(s)	2410
HpaII	CCGG	5 cut(s)	42, 70, 355, 441, 1592
HphI	GGTGA	4 cut(s)	638, 860, 1228, 1454
Hpy166II	GTNNAC	8 cut(s)	157, 1074, 1112, 1165, 1802, 2176, 2400, 2410
Hpy188III	TCNNGA	8 cut(s)	338, 548, 568, 619, 883, 1025, 1451, 1550
Hpy8I	GTNNAC	8 cut(s)	157, 1074, 1112, 1165, 1802, 2176, 2400, 2410
Hpy99I	CGWCG	3 cut(s)	152, 209, 1237
HpyAV	CCTTC	7 cut(s)	782, 1099, 1207, 1479, 1919, 1973, 2335
HpyCH4IV	ACGT	7 cut(s)	159, 171, 279, 1654, 1699, 1996, 2064
HpyF10VI	GCNNNNNNNGC	7 cut(s)	130, 141, 799, 812, 1298, 1898, 1948
HpyF3I	CTNAG	9 cut(s)	109, 114, 270, 489, 506, 620, 867, 980, 2054
HpySE526I	ACGT	7 cut(s)	159, 171, 279, 1654, 1699, 1996, 2064
HspAI	GCGC	3 cut(s)	133, 641, 806
KflI	GGGWCCC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	2230
KspAI	GTTAAC	1 cut(s)	2410
Kzo9I	GATC	9 cut(s)	184, 331, 754, 885, 1186, 1546, 2155, 2230, 2473
LguI	GCTCTTC	1 cut(s)	1780
LmnI	GCTCC	7 cut(s)	67, 714, 820, 984, 1289, 1395, 2084
MaeI	CTAG	5 cut(s)	1367, 1683, 1734, 2007, 2015
MaeII	ACGT	7 cut(s)	159, 171, 279, 1654, 1699, 1996, 2064
MaeIII	GTNAC	3 cut(s)	991, 1529, 2180
MalI	GATC	9 cut(s)	186, 333, 756, 887, 1188, 1548, 2157, 2232, 2475
MbiI	CCGCTC	2 cut(s)	717, 1398
MboI	GATC	9 cut(s)	184, 331, 754, 885, 1186, 1546, 2155, 2230, 2473
MflI	RGATCY	3 cut(s)	184, 885, 1546
MhlI	GDGCHC	3 cut(s)	817, 1504, 1944
MlsI	TGGCCA	1 cut(s)	892
MluCI	AATT	8 cut(s)	377, 405, 1051, 1220, 1601, 1706, 1752, 2513
MluNI	TGGCCA	1 cut(s)	892
MlyI	GAGTC	2 cut(s)	567, 2157
MmeI	TCCRAC	5 cut(s)	228, 255, 276, 1591, 2047
Mox20I	TGGCCA	1 cut(s)	892
Mph1103I	ATGCAT	2 cut(s)	37, 974
MscI	TGGCCA	1 cut(s)	892
MslI	CAYNNNNRTG	4 cut(s)	260, 726, 833, 2450
Msp20I	TGGCCA	1 cut(s)	892
MspA1I	CMGCKG	3 cut(s)	1826, 2285, 2390
MspCI	CTTAAG	1 cut(s)	575
MspI	CCGG	5 cut(s)	42, 70, 355, 441, 1592
MspR9I	CCNGG	9 cut(s)	43, 70, 345, 356, 441, 594, 799, 989, 1677
MvaI	CCWGG	5 cut(s)	345, 594, 799, 989, 1677
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	7 cut(s)	130, 141, 799, 812, 1298, 1898, 1948
NciI	CCSGG	4 cut(s)	43, 70, 356, 441
NcoI	CCATGG	3 cut(s)	828, 893, 2369
NdeII	GATC	9 cut(s)	184, 331, 754, 885, 1186, 1546, 2155, 2230, 2473
NheI	GCTAGC	1 cut(s)	2014
NmeAIII	GCCGAG	1 cut(s)	1334
NmuCI	GTSAC	2 cut(s)	1529, 2180
NsbI	TGCGCA	1 cut(s)	134
NsiI	ATGCAT	2 cut(s)	37, 974
NspI	RCATGY	3 cut(s)	522, 1171, 2455
NspV	TTCGAA	1 cut(s)	1992
PaeI	GCATGC	1 cut(s)	522
PagI	TCATGA	1 cut(s)	337
PciI	ACATGT	2 cut(s)	1167, 2451
PciSI	GCTCTTC	1 cut(s)	1780
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 201
PfeI	GAWTC	5 cut(s)	197, 571, 653, 899, 2142
PflFI	GACNNNGTC	1 cut(s)	152
PflMI	CCANNNNNTGG	2 cut(s)	1838, 2483
PfoI	TCCNGGA	1 cut(s)	1675
PleI	GAGTC	2 cut(s)	566, 2156
PpsI	GAGTC	2 cut(s)	566, 2156
Ppu21I	YACGTR	3 cut(s)	160, 280, 1655
PpuMI	RGGWCCY	4 cut(s)	415, 616, 1679, 2374
PscI	ACATGT	2 cut(s)	1167, 2451
Psp1406I	AACGTT	1 cut(s)	171
Psp5II	RGGWCCY	4 cut(s)	415, 616, 1679, 2374
Psp6I	CCWGG	5 cut(s)	343, 592, 797, 987, 1675
PspGI	CCWGG	5 cut(s)	343, 592, 797, 987, 1675
PspPI	GGNCC	5 cut(s)	415, 616, 1269, 1679, 2374
PspPPI	RGGWCCY	4 cut(s)	415, 616, 1679, 2374
PstI	CTGCAG	5 cut(s)	433, 1013, 1297, 1381, 1903
PstNI	CAGNNNCTG	5 cut(s)	97, 567, 866, 1301, 2285
PsuI	RGATCY	3 cut(s)	184, 885, 1546
PsyI	GACNNNGTC	1 cut(s)	152
PvuII	CAGCTG	2 cut(s)	2285, 2390
RsaI	GTAC	8 cut(s)	162, 278, 1075, 1111, 1405, 1422, 2437, 2539
RsaNI	GTAC	8 cut(s)	161, 277, 1074, 1110, 1404, 1421, 2436, 2538
RseI	CAYNNNNRTG	4 cut(s)	260, 726, 833, 2450
SapI	GCTCTTC	1 cut(s)	1780
Sau3AI	GATC	9 cut(s)	184, 331, 754, 885, 1186, 1546, 2155, 2230, 2473
Sau96I	GGNCC	5 cut(s)	415, 616, 1269, 1679, 2374
ScaI	AGTACT	1 cut(s)	2539
SchI	GAGTC	2 cut(s)	567, 2157
ScrFI	CCNGG	9 cut(s)	43, 70, 345, 356, 441, 594, 799, 989, 1677
SduI	GDGCHC	3 cut(s)	817, 1504, 1944
SfcI	CTRYAG	6 cut(s)	429, 1009, 1293, 1377, 1899, 1914
SfuI	TTCGAA	1 cut(s)	1992
SinI	GGWCC	5 cut(s)	415, 616, 1269, 1679, 2374
SmiMI	CAYNNNNRTG	4 cut(s)	260, 726, 833, 2450
SmlI	CTYRAG	3 cut(s)	575, 1023, 1550
SmoI	CTYRAG	3 cut(s)	575, 1023, 1550
SnaBI	TACGTA	1 cut(s)	280
SpeI	ACTAGT	1 cut(s)	1366
SphI	GCATGC	1 cut(s)	522
Sse9I	AATT	8 cut(s)	377, 405, 1051, 1220, 1601, 1706, 1752, 2513
SspMI	CTAG	5 cut(s)	1367, 1683, 1734, 2007, 2015
StyD4I	CCNGG	9 cut(s)	41, 68, 343, 354, 439, 592, 797, 987, 1675
StyI	CCWWGG	3 cut(s)	828, 893, 2369
TaiI	ACGT	7 cut(s)	162, 174, 282, 1657, 1702, 1999, 2067
TaqI	TCGA	4 cut(s)	147, 1992, 2242, 2472
TaqII	GACCGA	1 cut(s)	2250
TasI	AATT	8 cut(s)	377, 405, 1051, 1220, 1601, 1706, 1752, 2513
TatI	WGTACW	4 cut(s)	1073, 1403, 2435, 2537
TauI	GCSGC	3 cut(s)	396, 2100, 2217
TfiI	GAWTC	5 cut(s)	197, 571, 653, 899, 2142
TscAI	CASTG	6 cut(s)	247, 438, 1430, 1487, 1949, 2488
TseFI	GTSAC	2 cut(s)	1529, 2180
Tsp45I	GTSAC	2 cut(s)	1529, 2180
TspDTI	ATGAA	8 cut(s)	182, 354, 370, 666, 1226, 1682, 1755, 2434
TspGWI	ACGGA	1 cut(s)	1373
TspRI	CASTG	6 cut(s)	247, 438, 1430, 1487, 1949, 2488
Tth111I	GACNNNGTC	1 cut(s)	152
Van91I	CCANNNNNTGG	2 cut(s)	1838, 2483
Vha464I	CTTAAG	1 cut(s)	575
VpaK11BI	GGWCC	5 cut(s)	415, 616, 1269, 1679, 2374
XapI	RAATTY	5 cut(s)	377, 405, 1220, 1752, 2513
XceI	RCATGY	3 cut(s)	522, 1171, 2455
XcmI	CCANNNNNNNNNTGG	2 cut(s)	98, 682
XmiI	GTMKAC	1 cut(s)	2399
XspI	CTAG	5 cut(s)	1367, 1683, 1734, 2007, 2015
ZrmI	AGTACT	1 cut(s)	2539
Zsp2I	ATGCAT	2 cut(s)	37, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.