Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027976.1

Orthogroup ID

OG0004616

Physical Location & Seq

Genomic Coordinates Forward (+)

64 .. 714

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027976.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgcttgaagaattgaattatgttcctgaaactactgtgaacacaaacaacataatccttcaaaatcaggatacatccattttacgtatcaccaatatatgtgtgaaggatatggccatatttaaaatcatttgcgaaggtcactccactgtcaaggaggatggagaagagcctgattatcgcccaagaggtgccaacgggtttcccagatggcttgaggtcacaccagcagctggcatgattaaacctgaacaatctacggaagtatccgttcatcatgaagagttccatactttagaagaatttgttgatggcatccctcaaaattggtggtgtgaagatactcgtgataaggaagtgattttgctggtgaatgtccaaggtagctgctcagcgcaaacatacactcaccgaatccgtgtgaggcattgcttctcagccaagacagtatcgcgcattgactccaaatccaacagctctagaaaaggccagggaagtccagttcacaagcaacctgctaacacttcaagtgaaacgactaactcaaaaaatccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

185

Amino Acids

20.9

Weight (kDa)

5.8

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05630 AT1G05630 AT1G05630 AT2G31830 AT2G31830 AT2G31830 AT2G43900 AT2G43900
fragaria_vesca	FvH4_5g18650 FvH4_5g18650 FvH4_5g18650 FvH4_5g18650
malus_domestica	MD00G1087600.v1.1 MD15G1143600.v1.1
prunus_persica	Prupe.7G062000_v2.0.a1
pyrus_communis	pycom15g12950 pycom15g12960 pycom15g12970 pycom290g00230
rosa_chinensis	RchiOBHm_Chr7g0176851
rosa_laevigata	RLG00000005579
rosa_multiflora	Rmu_co8238923.1_g000001 Rmu_sc0005310.1_g000054 Rmu_sc0027976.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276340
rosa_rugosa	Rorug06G0401200
rosa_samantha	Rh7AG000500 Rh7BG000900 Rh7CG000500 Rh7DG000700
rosa_wichuraiana	Rw7G000040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	523
AccB1I	GGYRCC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	233
AccII	CGCG	1 cut(s)	454
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	4 cut(s)	8, 16, 62, 528
AjnI	CCWGG	1 cut(s)	489
AloI	GAACNNNNNNTCC	2 cut(s)	486, 518
AluBI	AGCT	3 cut(s)	233, 387, 477
AluI	AGCT	3 cut(s)	233, 387, 477
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	114, 487
ApeKI	GCWGC	2 cut(s)	230, 387
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	397, 456
AsuHPI	GGTGA	3 cut(s)	82, 382, 401
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BalI	TGGCCA	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	191
BauI	CACGAG	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	242, 374
BccI	CCATC	3 cut(s)	155, 204, 305
BciT130I	CCWGG	1 cut(s)	491
BciVI	GTATCC	2 cut(s)	64, 277
BfaI	CTAG	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	523
BfuI	GTATCC	2 cut(s)	64, 277
BisI	GCNGC	2 cut(s)	231, 388
BlpI	GCTNAGC	1 cut(s)	391
BlsI	GCNGC	2 cut(s)	232, 389
Bme1390I	CCNGG	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	379, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	379, 490
BseGI	GGATG	3 cut(s)	74, 166, 315
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	405, 450
BseNI	ACTGG	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	242, 374
Bsh1236I	CGCG	1 cut(s)	454
BshFI	GGCC	2 cut(s)	116, 489
BshNI	GGYRCC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	233
BsnI	GGCC	2 cut(s)	116, 489
Bsp1720I	GCTNAGC	1 cut(s)	391
BspANI	GGCC	2 cut(s)	116, 489
BspCNI	CTCAG	2 cut(s)	404, 449
BspFNI	CGCG	1 cut(s)	454
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	523
BspQI	GCTCTTC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	379, 490
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	379
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	3 cut(s)	37, 151, 448
Bst6I	CTCTTC	2 cut(s)	162, 276
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	2 cut(s)	391, 436
BstF5I	GGATG	3 cut(s)	74, 166, 315
BstFNI	CGCG	1 cut(s)	454
BstHHI	GCGC	2 cut(s)	397, 456
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstSNI	TACGTA	1 cut(s)	86
BstUI	CGCG	1 cut(s)	454
BstV1I	GCAGC	2 cut(s)	242, 374
BsuI	GTATCC	2 cut(s)	64, 277
BsuRI	GGCC	2 cut(s)	116, 489
BtsCI	GGATG	3 cut(s)	74, 166, 315
BtsIMutI	CAGTG	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	235
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	2 cut(s)	397, 456
CspCI	CAANNNNNGTGG	2 cut(s)	311, 346
CviAII	CATG	2 cut(s)	238, 278
CviJI	RGCY	8 cut(s)	116, 172, 214, 233, 387, 440, 477, 489
CviKI_1	RGCY	8 cut(s)	116, 172, 214, 233, 387, 440, 477, 489
DdeI	CTNAG	2 cut(s)	391, 436
DraI	TTTAAA	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	162, 276
EarI	CTCTTC	2 cut(s)	162, 276
Eco105I	TACGTA	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	2 cut(s)	241, 281
FatI	CATG	2 cut(s)	237, 277
Fnu4HI	GCNGC	2 cut(s)	231, 388
FokI	GGATG	3 cut(s)	61, 173, 302
Fsp4HI	GCNGC	2 cut(s)	231, 388
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	2 cut(s)	396, 455
GluI	GCNGC	2 cut(s)	231, 388
HaeIII	GGCC	2 cut(s)	116, 489
HhaI	GCGC	2 cut(s)	397, 456
Hin1II	CATG	2 cut(s)	241, 281
Hin6I	GCGC	2 cut(s)	395, 454
HinP1I	GCGC	2 cut(s)	395, 454
HinfI	GANTC	2 cut(s)	414, 461
HphI	GGTGA	3 cut(s)	82, 382, 401
Hpy166II	GTNNAC	2 cut(s)	40, 505
Hpy188III	TCNNGA	5 cut(s)	26, 68, 278, 347, 480
Hpy8I	GTNNAC	2 cut(s)	40, 505
HpyAV	CCTTC	3 cut(s)	68, 100, 131
HpyCH4III	ACNGT	3 cut(s)	37, 151, 448
HpyCH4IV	ACGT	1 cut(s)	85
HpyF3I	CTNAG	2 cut(s)	391, 436
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	241, 281
HspAI	GCGC	2 cut(s)	395, 454
LguI	GCTCTTC	1 cut(s)	162
Lsp1109I	GCAGC	2 cut(s)	242, 374
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	2 cut(s)	140, 220
MboII	GAAGA	5 cut(s)	20, 179, 293, 311, 350
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	4 cut(s)	11, 16, 302, 325
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	5 cut(s)	151, 182, 211, 330, 417
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	2 cut(s)	123, 243
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	491
MvnI	CGCG	1 cut(s)	454
NlaIII	CATG	2 cut(s)	241, 281
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	2 cut(s)	140, 220
PagI	TCATGA	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	414
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	232, 389
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
Ppu21I	YACGTR	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	123, 243
SatI	GCNGC	2 cut(s)	231, 388
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	491
SfaNI	GCATC	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SnaBI	TACGTA	1 cut(s)	86
Sse9I	AATT	4 cut(s)	11, 16, 302, 325
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	3 cut(s)	37, 151, 448
TaiI	ACGT	1 cut(s)	88
TasI	AATT	4 cut(s)	11, 16, 302, 325
TfiI	GAWTC	1 cut(s)	414
Tru1I	TTAA	2 cut(s)	123, 243
Tru9I	TTAA	2 cut(s)	123, 243
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	140, 220
TseI	GCWGC	2 cut(s)	230, 387
Tsp45I	GTSAC	2 cut(s)	140, 220
TspDTI	ATGAA	2 cut(s)	263, 294
TspGWI	ACGGA	3 cut(s)	259, 275, 407
TspRI	CASTG	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	302
XbaI	TCTAGA	1 cut(s)	479
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.