Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004616

Physical Location & Seq

Genomic Coordinates Forward (+)

54628313 .. 54630891

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0401200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCCATGGGCTTTCTCTGCTTAGCTGTCTTCCTCTTCCTCGGCCTCGACCTCGATACAGGCTACGCCGCCACCACCCCTACCTCAGAGGGCGTCGAGATCACATACGGAACTGTGCTGAAGCTGATGCACGAGAGGACCAAGTTTCGGTTGCACTCGCACGACGTGCCGTATGGCTCTGGCAGTGGCCAGCAGTCTGTCACTGGATTTCCAAATGTCGACGATGCTAATAGCTACTGGATTGTTAGACCTCAGCTTGAAACATCTGCCAGGCAAGGTGACAGCATTCCCAGTGGGACGATCGTCAGGTTTCAACACATGAGGACTAGGAAATGGCTGCACAGCCATTTGCACGCATCCCCTATATCAGGCAACCAAGAGATAAGCTGCTTTGGGGGAGAACATGAATCTGATACTGGTGATCACTGGAGGGTTATGATTGAAGCAAGTGGGAAGACCTGGAAGCAAGATCAAAGGGTTCGACTTCAGCATGTTGACACTGGTGCTTACCTACACAGTCATGACAAGAAATACCAGCGCATAGCTGGGGGACAGCAGGAGGTTTGTGGTGTGAGAGACAAACGTGCTGACAATGTTTGGCTGGCAGCAGAAGGTGTATACCTTCCAGTTACTGAAACTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

214

Amino Acids

23.94

Weight (kDa)

6.63

Isoelectric Point (pI)

31.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIR	PF02815	64 - 198	5.6e-14	MIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05630 AT1G05630 AT1G05630 AT2G31830 AT2G31830 AT2G31830 AT2G43900 AT2G43900
fragaria_vesca	FvH4_5g18650 FvH4_5g18650 FvH4_5g18650 FvH4_5g18650
malus_domestica	MD00G1087600.v1.1 MD15G1143600.v1.1
prunus_persica	Prupe.7G062000_v2.0.a1
pyrus_communis	pycom15g12950 pycom15g12960 pycom15g12970 pycom290g00230
rosa_chinensis	RchiOBHm_Chr7g0176851
rosa_laevigata	RLG00000005579
rosa_multiflora	Rmu_co8238923.1_g000001 Rmu_sc0005310.1_g000054 Rmu_sc0027976.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276340
rosa_rugosa	Rorug06G0401200
rosa_samantha	Rh7AG000500 Rh7BG000900 Rh7CG000500 Rh7DG000700
rosa_wichuraiana	Rw7G000040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	219, 618
AciI	CCGC	1 cut(s)	69
AcoI	YGGCCR	2 cut(s)	3, 187
AcuI	CTGAAG	2 cut(s)	140, 470
AcyI	GRCGYC	1 cut(s)	93
AdeI	CACNNNGTG	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	147, 368
AgsI	TTSAA	3 cut(s)	260, 314, 443
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	269, 458
AluBI	AGCT	6 cut(s)	26, 124, 234, 256, 387, 545
AluI	AGCT	6 cut(s)	26, 124, 234, 256, 387, 545
Alw26I	GTCTC	1 cut(s)	570
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	3 cut(s)	3, 43, 187
ApeKI	GCWGC	3 cut(s)	337, 387, 605
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	290, 431
AvaII	GGWCC	1 cut(s)	138
BalI	TGGCCA	2 cut(s)	5, 189
BauI	CACGAG	1 cut(s)	131
BbsI	GAAGAC	2 cut(s)	22, 461
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	324, 374, 617
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	2 cut(s)	271, 460
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	1 cut(s)	327
BisI	GCNGC	4 cut(s)	69, 338, 388, 606
BlpI	GCTNAGC	1 cut(s)	22
BlsI	GCNGC	4 cut(s)	70, 339, 389, 607
Bme1390I	CCNGG	2 cut(s)	271, 460
Bme18I	GGWCC	1 cut(s)	138
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	138
BmrFI	CCNGG	2 cut(s)	271, 460
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	3 cut(s)	117, 214, 365
BmuI	ACTGGG	1 cut(s)	285
BoxI	GACNNNNGTC	1 cut(s)	302
BpiI	GAAGAC	2 cut(s)	22, 461
BpmI	CTGGAG	1 cut(s)	448
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	6, 40
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 368
Bse1I	ACTGG	7 cut(s)	208, 242, 291, 421, 431, 505, 626
BseBI	CCWGG	2 cut(s)	271, 460
BseDI	CCNNGG	2 cut(s)	6, 40
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	2 cut(s)	147, 368
BseMII	CTCAG	2 cut(s)	99, 266
BseNI	ACTGG	7 cut(s)	208, 242, 291, 421, 431, 505, 626
BseXI	GCAGC	3 cut(s)	324, 374, 617
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	323
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	3 cut(s)	5, 45, 189
BsiEI	CGRYCG	1 cut(s)	303
BslFI	GGGAC	2 cut(s)	310, 564
BslI	CCNNNNNNNGG	2 cut(s)	147, 368
BsmAI	GTCTC	1 cut(s)	570
BsmFI	GGGAC	2 cut(s)	310, 564
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	3 cut(s)	5, 45, 189
Bsp143I	GATC	4 cut(s)	99, 300, 421, 469
Bsp1720I	GCTNAGC	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	3 cut(s)	5, 45, 189
BspCNI	CTCAG	2 cut(s)	98, 265
BspHI	TCATGA	1 cut(s)	520
BsrI	ACTGG	7 cut(s)	208, 242, 291, 421, 431, 505, 626
BssECI	CCNNGG	2 cut(s)	6, 40
BssMI	GATC	4 cut(s)	99, 300, 421, 469
BssNAI	GTATAC	1 cut(s)	619
BssNI	GRCGYC	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	619
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	2 cut(s)	271, 460
Bst4CI	ACNGT	2 cut(s)	115, 518
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	191, 354, 603
BstDEI	CTNAG	4 cut(s)	22, 85, 252, 639
BstDSI	CCRYGG	1 cut(s)	6
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	4 cut(s)	102, 303, 424, 472
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	4 cut(s)	99, 300, 421, 469
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 166
BstNI	CCWGG	2 cut(s)	271, 460
BstNSI	RCATGY	1 cut(s)	494
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	269, 458
BstV1I	GCAGC	3 cut(s)	324, 374, 617
BstV2I	GAAGAC	2 cut(s)	22, 461
BstZ17I	GTATAC	1 cut(s)	619
BsuRI	GGCC	3 cut(s)	5, 45, 189
BtgI	CCRYGG	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	356
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	5 cut(s)	190, 201, 298, 424, 498
Cac8I	GCNNGC	3 cut(s)	191, 354, 603
CaiI	CAGNNNCTG	1 cut(s)	632
CciI	TCATGA	1 cut(s)	520
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	138
CseI	GACGC	1 cut(s)	82
CviAII	CATG	5 cut(s)	7, 319, 404, 491, 521
DdeI	CTNAG	4 cut(s)	22, 85, 252, 639
DpnI	GATC	4 cut(s)	101, 302, 423, 471
DpnII	GATC	4 cut(s)	99, 300, 421, 469
DraIII	CACNNNGTG	1 cut(s)	166
EaeI	YGGCCR	2 cut(s)	3, 187
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	138
Eco57I	CTGAAG	2 cut(s)	140, 470
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	269, 458
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	5 cut(s)	10, 322, 407, 494, 524
FaqI	GGGAC	2 cut(s)	310, 564
FatI	CATG	5 cut(s)	6, 318, 403, 490, 520
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	2 cut(s)	219, 618
Fnu4HI	GCNGC	4 cut(s)	69, 338, 388, 606
FokI	GGATG	1 cut(s)	343
Fsp4HI	GCNGC	4 cut(s)	69, 338, 388, 606
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	4 cut(s)	69, 338, 388, 606
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	448
HaeIII	GGCC	3 cut(s)	5, 45, 189
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	540
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	5 cut(s)	10, 322, 407, 494, 524
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	2 cut(s)	220, 496
HindII	GTYRAC	2 cut(s)	220, 496
HinfI	GANTC	1 cut(s)	407
HphI	GGTGA	2 cut(s)	290, 431
Hpy166II	GTNNAC	3 cut(s)	220, 496, 619
Hpy188I	TCNGA	2 cut(s)	88, 412
Hpy188III	TCNNGA	2 cut(s)	97, 521
Hpy8I	GTNNAC	3 cut(s)	220, 496, 619
Hpy99I	CGWCG	3 cut(s)	98, 167, 224
HpyAV	CCTTC	2 cut(s)	605, 632
HpyCH4III	ACNGT	2 cut(s)	115, 518
HpyCH4IV	ACGT	2 cut(s)	165, 583
HpyCH4V	TGCA	4 cut(s)	130, 154, 340, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 166
HpyF3I	CTNAG	4 cut(s)	22, 85, 252, 639
HpySE526I	ACGT	2 cut(s)	165, 583
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	5 cut(s)	10, 322, 407, 494, 524
HspAI	GCGC	1 cut(s)	538
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	99, 300, 421, 469
Lsp1109I	GCAGC	3 cut(s)	324, 374, 617
LweI	GCATC	3 cut(s)	117, 214, 365
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	2 cut(s)	165, 583
MaeIII	GTNAC	3 cut(s)	199, 278, 628
MalI	GATC	4 cut(s)	101, 302, 423, 471
MboI	GATC	4 cut(s)	99, 300, 421, 469
MboII	GAAGA	3 cut(s)	22, 28, 466
MlsI	TGGCCA	2 cut(s)	5, 189
MluNI	TGGCCA	2 cut(s)	5, 189
Mox20I	TGGCCA	2 cut(s)	5, 189
MscI	TGGCCA	2 cut(s)	5, 189
MslI	CAYNNNNRTG	1 cut(s)	519
Msp20I	TGGCCA	2 cut(s)	5, 189
MspR9I	CCNGG	2 cut(s)	271, 460
Mva1269I	GAATGC	1 cut(s)	285
MvaI	CCWGG	2 cut(s)	271, 460
MwoI	GCNNNNNNNGC	2 cut(s)	18, 166
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	4 cut(s)	99, 300, 421, 469
NlaIII	CATG	5 cut(s)	10, 322, 407, 494, 524
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	199, 278
NspI	RCATGY	1 cut(s)	494
PagI	TCATGA	1 cut(s)	520
PctI	GAATGC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	4 cut(s)	70, 339, 389, 607
Ple19I	CGATCG	1 cut(s)	303
PshAI	GACNNNNGTC	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	269, 458
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	2 cut(s)	269, 458
PspPI	GGNCC	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	632
PvuI	CGATCG	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	519
SalI	GTCGAC	1 cut(s)	218
SatI	GCNGC	4 cut(s)	69, 338, 388, 606
Sau3AI	GATC	4 cut(s)	99, 300, 421, 469
Sau96I	GGNCC	1 cut(s)	138
ScrFI	CCNGG	2 cut(s)	271, 460
SfaNI	GCATC	3 cut(s)	117, 214, 365
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	519
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	269, 458
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	115, 518
TaiI	ACGT	2 cut(s)	168, 586
TaqI	TCGA	5 cut(s)	48, 54, 96, 219, 481
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	407
TscAI	CASTG	5 cut(s)	190, 208, 298, 431, 505
TseFI	GTSAC	2 cut(s)	199, 278
TseI	GCWGC	3 cut(s)	337, 387, 605
Tsp45I	GTSAC	2 cut(s)	199, 278
TspDTI	ATGAA	1 cut(s)	420
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	5 cut(s)	190, 208, 298, 431, 505
VpaK11BI	GGWCC	1 cut(s)	138
XagI	CCTNNNNNAGG	1 cut(s)	366
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmiI	GTMKAC	2 cut(s)	219, 618
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.