Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0004616

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG000700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3420 bp

ATGGACGAGAGGAGTGATGACGAGGACAAGGATGCATTGGCCGGGTTAAGCTCTGCCCCTGCTCCGCCCCGGAAATCGCACTCATTAAGCCAGCAACTGCGTGGAACCTCAGCTCAGAAACGGCACCAACTGCGCAAGCATAGCCTCGACGATGTCCACGTACCCATGAGCGTTGTTAATGCGGATCCCTACTACGATTCTTCCGACGATGATTTCTTTCCCTACTCGTCCAACACCACCAGTGCATCATCCAACATGACTATGAGTGCTGAGGAGTACGTCTCCTCCTCGCATAGATTAGACCAAAGCCTGTGCATGGAGGGCGGGGTAGATCATCATGAACCAGGCAGCAGCCGGGAAATCCAGCCATTACCTGAATTCATAGGGAGTGGCGGCGGAACAGGAATTTTTAGGGTCCCAACGCGGGCTGCAGTGCATCCCGGTCGGCCTCCATGCTTGGAGTTGAGACCACACCCTTTGAGGGAAACTCAGGTAGGGAGGTTCCTTAGAACCATTGCGTGCACCGAGACACAACTCTGGGCTGGTCAGGAGGGTGGAGTCAGGGTCTGGAATCTTAAGGATGTATTTGAACCTGGGTGCGGTCTCGGAGGCAGGGTCCTGAGGGGTGATGAGGATGCAGCGCCTTACTATGAATCTGCAAACACCTCTCCTGCCATGTTTCTGATGGTTGATGTTGGGAATAAGTTGATTTGGAGCGGGCATAAGGATGGCAAGATTAGGTCTTGGAAGATGGATCAGCCTTTGGATGCTTCTACTCCTTTTAAGGAAGGGCTTTCCTGGCAGGCGCACCGTGCTCCTGTTCTTGCCATGGTTATGACTTCTTATGGTGATATGTGGTCAGGTTCTGAGGGTGGTGTTATTAAGATCTGGCCATGGGAATCCATTGAAAAATCTCTTTCTCTAAAGCCAGAGGAAAGACACATGGCAGCTTTGCTGGTGGAGAGGTCATGCATTGACCTTAGGAGCCAGGTTACTGTAAATGGTGTCTGCAGTATATCTTCTCAAGATGTCAAGTGTTTGTTATCTGATAATTTTAGAGCAAAAGTTTGGTGTACTGGGTCTATGTCCTTCTCATTGTGGGATGCTCGTACACGAGAGCTTGTGAAAGTCTTTAATGTAGATGGTCAGATTGAGAATAGAGTTGACATGTCGTCTGTGCAGCAAGATCAAGCATCAGTAGAAGATGAGATGAAGGTGAAATTTGTTTCGACGACAAAAAAGGAGAAATCGCAGGGCTTTTTGCAACGGTCCCGCAATGCTATAATGGGAGCTGCAGATGCTGTTCGCCGAGTTGCGACCAGAGGGGCAGGGGCATTTGTAGAAGATGCCAAGAAAACGGAAGCACTAGTGCTAACTGCAGATGGCATGATATGGAGCGGATGTACAAATGGTTTATTGGTACAGTGGGATGGGAATGGAAACCGTGTTCAAGATTTTAATCACCATCCTTCTGCTGTCCAGTGCTTTTGCACTTTTGGGGCACGCATATATGTAGGATATGCGAGTGGTCACATTCAGGTCTTGGATCTTGAGGGAAATCTGATTGCAAGATGGGTTGCACACAGTAGTCCGGTCATAAAATTGGCAGTTGGAACTGGTTGTATTTATAGCTTGGCTACTCACGGTGGAATACGTGGATGGAACATGAAATCTCCAGGACCTAGTGATGACATACTACGTTCTGAATTGGCTGCTAAAGAAAGTATATATACTAGAAGAGACAATGTTAGAATTTTGATCGGCTCATGGAATGTTGGTCAAGGAAGAGCATCTCATGGTTCACTCATGTCATGGTTGGGTTCCGCTGTGCCAGATGTTGGTATTGTAGTTGTTGGGTTGCAAGAAGTAGAAATGGGTGCAGGTTTTCTTGCAATGTCTGCAGCAAAAGAAACTGTAGGGCTTGAAGGGAGTTCTGTTGGGCACTGGTGGCTGGATAATATAGGAAAGGCTTTAGAAGAAGGAAAAACTTTCGAACGTATGGGTTCTAGGCAGCTAGCAGGCTTGCTCATATCTCTTTGGGTAAGAAAAAATCTTAGAACACACGTTGGAGATATAGATGCTGGAGCAGTTCCATGTGGCTTTGGTCGTGCCATTGGCAACAAGGGAGGTGTAGGTTTGAGAATCAGAGTCTATGATCGGATAATGTGCTTTGTGAACTGTCACTTGGCTGCACATTTGGAAGCTGTCAATCGCCGCAATGCTGACTTTGATCACATTTATCGAAATATGGTCTTCAATCGGTCATCTCTACTCAACACAGCAGCTGCTGGTGTGTCTACTGCTGTTAACACGGTTCGGACTACAAATGCTGCAGGCAGCAACTCTGAAGAAGCAGCAAGACCTGAATTAGCCGAAGCCGATGTGGTTGTTTTTCTGGGTGATTTCAATTACCGACTTTTTGGTATATCTTATGATGAAGCAAGGGACTTCGTTTCACAAAGATGCTTTGATTGGCTCAGAGAAAAAGATCAGCTCAGAGCAGAGATGAAAGCTGGGAAAGTTTTCCAAGGGATGCGTGAGGCACTCATCAGATTCCCTCCAACATACAAGTTTGAAAGGCACCAAGCAGGTTTAGCAGGATATGATGCTGGTGAGAAGAAACGAATTCCTGCCTGGTGTGACAGAATAATATATCGTGATAATCGATCAGCTCCAGTCTCTGAGTGCAGTTTAGAGTGCCCTGTGGTCTCAGCAATTTTGCAGTATGATGCATGCATGGATGTGACTGACAGTGATCACAAACCTGTCCGGTGTAAATTAACTGTACAAATTGCCCATGTTGATAGATCGGTAAGGAGAGGGGAGTTTGGGGAAATTATTAGATCCAATGAGAAAATCAGATCTATGCTTGAAGAATTGAATTATGTTCCTGAAACTAGTGTGAACACAAACAACATAATCCTTCAAAATCAGGATACATCCATTTTACGTATCACCAATAAATGTGTGAAGGATATGGCCATATTTAAAATCATTTGCGAAGGTCACTCCACTGTCAAGGAGGATGGAGAAGAGCCTGATTATCGCCCAAGAGGTGCCAACGGGTTTCCCAGATGGCTTGAGGTCACACCAGCAGCTGGCATGATTAAACCTGAACAATCTGCGGAAGTATCCGTTCATCATGAAGAGTTCCATACTTTAGAAGAATTTGTTGATGGCATCCCTCAAAATTGGTGGTGTGAAGATACTCGTGATAAGGAAGTGATTTTGCTGGTGAATGTCCAAGGTAGCTGCTCAGCGCAAACATACACTCACCGAATCCGTGTGAGGCATTGCTTCTCAGCCAAGACAGTATCGCGCATTGACTCCAAATCCAACAGCTCTAGAAAAGGCCAGGGAAGTCCAGTTCACAAGCAACCTGCTAACTCTTCAAGTGAAACTAACTCAAAAAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

1139

Amino Acids

125.96

Weight (kDa)

6.58

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_IP5PC_F	PF23754	160 - 554	1.5e-230	IP5P C-F beta-propeller
Exo_endo_phos	PF03372	588 - 920	2.1e-06	Endonuclease/Exonuclease/phosphatase family
Exo_endo_phos2	PF22669	589 - 924	4.9e-63	Endonuclease/Exonuclease/phosphatase family 2
Ig-like_IP5PC_F	PF23755	963 - 1099	8.5e-74	IP5P C-F Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05630 AT1G05630 AT1G05630 AT2G31830 AT2G31830 AT2G31830 AT2G43900 AT2G43900
fragaria_vesca	FvH4_5g18650 FvH4_5g18650 FvH4_5g18650 FvH4_5g18650
malus_domestica	MD00G1087600.v1.1 MD15G1143600.v1.1
prunus_persica	Prupe.7G062000_v2.0.a1
pyrus_communis	pycom15g12950 pycom15g12960 pycom15g12970 pycom290g00230
rosa_chinensis	RchiOBHm_Chr7g0176851
rosa_laevigata	RLG00000005579
rosa_multiflora	Rmu_co8238923.1_g000001 Rmu_sc0005310.1_g000054 Rmu_sc0027976.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276340
rosa_rugosa	Rorug06G0401200
rosa_samantha	Rh7AG000500 Rh7BG000900 Rh7CG000500 Rh7DG000700
rosa_wichuraiana	Rw7G000040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	134
Acc36I	ACCTGC	3 cut(s)	1871, 2579, 3388
AccB1I	GGYRCC	3 cut(s)	123, 2580, 3056
AccB7I	CCANNNNNTGG	2 cut(s)	1838, 3098
AccBSI	CCGCTC	2 cut(s)	717, 1398
AccI	GTMKAC	1 cut(s)	2297
AccII	CGCG	2 cut(s)	424, 3319
AclWI	GGATC	5 cut(s)	179, 192, 762, 1554, 2838
AcoI	YGGCCR	3 cut(s)	39, 890, 2979
AcsI	RAATTY	6 cut(s)	377, 405, 1220, 1752, 2625, 3167
AcuI	CTGAAG	1 cut(s)	2367
AfaI	GTAC	7 cut(s)	162, 278, 1075, 1111, 1405, 1422, 2787
AfiI	CCNNNNNNNGG	6 cut(s)	316, 424, 481, 599, 1838, 3098
AflII	CTTAAG	1 cut(s)	575
AflIII	ACRYGT	2 cut(s)	1167, 2062
AhdI	GACNNNNNGTC	1 cut(s)	1171
AhlI	ACTAGT	2 cut(s)	1366, 2897
AjnI	CCWGG	7 cut(s)	343, 592, 797, 987, 1675, 2633, 3354
AjuI	GAANNNNNNNTTGG	2 cut(s)	2168, 2200
AloI	GAACNNNNNNTCC	4 cut(s)	1431, 1463, 3351, 3383
Alw21I	GWGCWC	2 cut(s)	524, 817
Alw26I	GTCTC	7 cut(s)	286, 460, 521, 608, 1734, 2683, 2713
Alw44I	GTGCAC	1 cut(s)	520
AlwI	GGATC	5 cut(s)	179, 192, 762, 1554, 2838
AlwNI	CAGNNNCTG	8 cut(s)	97, 567, 866, 1301, 2285, 2288, 2681, 3098
AoxI	GGCC	5 cut(s)	39, 446, 890, 2979, 3352
ApaLI	GTGCAC	1 cut(s)	520
ApoI	RAATTY	6 cut(s)	377, 405, 1220, 1752, 2625, 3167
Asp700I	GAANNNNTTC	1 cut(s)	2522
AspLEI	GCGC	5 cut(s)	135, 643, 808, 3262, 3321
AspS9I	GGNCC	4 cut(s)	415, 616, 1269, 1679
AsuC2I	CCSGG	4 cut(s)	43, 70, 356, 441
AsuHPI	GGTGA	9 cut(s)	638, 860, 1228, 1454, 2411, 2624, 2947, 3247, 3266
AsuII	TTCGAA	1 cut(s)	1992
AsuNHI	GCTAGC	1 cut(s)	2014
AvaII	GGWCC	4 cut(s)	415, 616, 1269, 1679
AxyI	CCTNAGG	2 cut(s)	620, 980
BaeGI	GKGCMC	4 cut(s)	524, 1504, 1944, 2702
BalI	TGGCCA	2 cut(s)	892, 2981
BamHI	GGATCC	1 cut(s)	184
BanI	GGYRCC	3 cut(s)	123, 2580, 3056
BauI	CACGAG	2 cut(s)	1113, 3210
BbsI	GAAGAC	1 cut(s)	2245
Bbv12I	GWGCWC	2 cut(s)	524, 817
BbvCI	CCTCAGC	2 cut(s)	109, 270
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	7 cut(s)	345, 594, 799, 989, 1677, 2635, 3356
BciVI	GTATCC	2 cut(s)	2929, 3142
BclI	TGATCA	2 cut(s)	2230, 2755
BcnI	CCSGG	4 cut(s)	43, 70, 356, 441
BcoDI	GTCTC	7 cut(s)	286, 460, 521, 608, 1734, 2683, 2713
BcuI	ACTAGT	2 cut(s)	1366, 2897
BfaI	CTAG	7 cut(s)	1367, 1683, 1734, 2007, 2015, 2898, 3345
BfmI	CTRYAG	7 cut(s)	429, 1009, 1293, 1377, 1899, 1914, 2331
BfoI	RGCGCY	1 cut(s)	644
BfrI	CTTAAG	1 cut(s)	575
BfuAI	ACCTGC	3 cut(s)	1871, 2579, 3388
BfuI	GTATCC	2 cut(s)	2929, 3142
BglII	AGATCT	2 cut(s)	885, 2861
BlpI	GCTNAGC	1 cut(s)	3256
Bme18I	GGWCC	4 cut(s)	415, 616, 1269, 1679
BmeRI	GACNNNNNGTC	1 cut(s)	1171
BmgT120I	GGNCC	4 cut(s)	415, 616, 1269, 1679
BmrI	ACTGGG	1 cut(s)	1086
BmtI	GCTAGC	1 cut(s)	2018
BmuI	ACTGGG	1 cut(s)	1086
BpiI	GAAGAC	1 cut(s)	2245
BplI	GAGNNNNNCTC	4 cut(s)	266, 298, 472, 504
BpmI	CTGGAG	3 cut(s)	1659, 2103, 2658
Bpu10I	CCTNAGC	2 cut(s)	109, 270
Bpu1102I	GCTNAGC	1 cut(s)	3256
Bpu14I	TTCGAA	1 cut(s)	1992
BpuEI	CTTGAG	3 cut(s)	1008, 1571, 3101
BpuMI	CCSGG	4 cut(s)	43, 70, 356, 441
Bsa29I	ATCGAT	1 cut(s)	2665
BsaAI	YACGTR	3 cut(s)	160, 1655, 2951
BsaBI	GATNNNNATC	1 cut(s)	1458
BsaI	GGTCTC	3 cut(s)	460, 608, 2713
BsaJI	CCNNGG	7 cut(s)	68, 593, 828, 893, 2527, 3244, 3355
BsaWI	WCCGGW	2 cut(s)	1591, 2769
BsaXI	ACNNNNNCTCC	8 cut(s)	269, 299, 549, 579, 600, 630, 1387, 1417
Bsc4I	CCNNNNNNNGG	6 cut(s)	316, 424, 481, 599, 1838, 3098
Bse1I	ACTGG	7 cut(s)	240, 1081, 1480, 1621, 1949, 2675, 3365
Bse21I	CCTNAGG	2 cut(s)	620, 980
Bse3DI	GCAATG	5 cut(s)	513, 1282, 1899, 2224, 3292
Bse8I	GATNNNNATC	1 cut(s)	1458
BseBI	CCWGG	7 cut(s)	345, 594, 799, 989, 1677, 2635, 3356
BseCI	ATCGAT	1 cut(s)	2665
BseDI	CCNNGG	7 cut(s)	68, 593, 828, 893, 2527, 3244, 3355
BseJI	GATNNNNATC	1 cut(s)	1458
BseLI	CCNNNNNNNGG	6 cut(s)	316, 424, 481, 599, 1838, 3098
BseMI	GCAATG	5 cut(s)	513, 1282, 1899, 2224, 3292
BseNI	ACTGG	7 cut(s)	240, 1081, 1480, 1621, 1949, 2675, 3365
BseRI	GAGGAG	4 cut(s)	25, 274, 277, 287
BseSI	GKGCMC	4 cut(s)	524, 1504, 1944, 2702
BseYI	CCCAGC	1 cut(s)	2513
BsgI	GTGCAG	4 cut(s)	1199, 1899, 2175, 2707
Bsh1236I	CGCG	2 cut(s)	424, 3319
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	5 cut(s)	41, 448, 892, 2981, 3354
BshNI	GGYRCC	3 cut(s)	123, 2580, 3056
BshVI	ATCGAT	1 cut(s)	2665
BsiEI	CGRYCG	1 cut(s)	445
BsiHKAI	GWGCWC	2 cut(s)	524, 817
BsiSI	CCGG	6 cut(s)	42, 70, 355, 441, 1592, 2770
BslFI	GGGAC	3 cut(s)	401, 1255, 2459
BslI	CCNNNNNNNGG	6 cut(s)	316, 424, 481, 599, 1838, 3098
BsmAI	GTCTC	7 cut(s)	286, 460, 521, 608, 1734, 2683, 2713
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	3 cut(s)	401, 1255, 2459
BsnI	GGCC	5 cut(s)	41, 448, 892, 2981, 3354
Bso31I	GGTCTC	3 cut(s)	460, 608, 2713
Bsp119I	TTCGAA	1 cut(s)	1992
Bsp1286I	GDGCHC	5 cut(s)	524, 817, 1504, 1944, 2702
Bsp1407I	TGTACA	2 cut(s)	1403, 2785
Bsp1720I	GCTNAGC	1 cut(s)	3256
Bsp19I	CCATGG	2 cut(s)	828, 893
BspANI	GGCC	5 cut(s)	41, 448, 892, 2981, 3354
BspDI	ATCGAT	1 cut(s)	2665
BspFNI	CGCG	2 cut(s)	424, 3319
BspHI	TCATGA	2 cut(s)	337, 3142
BspMAI	CTGCAG	6 cut(s)	433, 1013, 1297, 1381, 1903, 2335
BspMI	ACCTGC	3 cut(s)	1871, 2579, 3388
BspOI	GCTAGC	1 cut(s)	2018
BspPI	GGATC	5 cut(s)	179, 192, 762, 1554, 2838
BspQI	GCTCTTC	2 cut(s)	1780, 3027
BspT104I	TTCGAA	1 cut(s)	1992
BspT107I	GGYRCC	3 cut(s)	123, 2580, 3056
BspTI	CTTAAG	1 cut(s)	575
BspTNI	GGTCTC	3 cut(s)	460, 608, 2713
BsrBI	CCGCTC	2 cut(s)	717, 1398
BsrDI	GCAATG	5 cut(s)	513, 1282, 1899, 2224, 3292
BsrGI	TGTACA	2 cut(s)	1403, 2785
BsrI	ACTGG	7 cut(s)	240, 1081, 1480, 1621, 1949, 2675, 3365
BssECI	CCNNGG	7 cut(s)	68, 593, 828, 893, 2527, 3244, 3355
BssSI	CACGAG	2 cut(s)	1113, 3210
BssT1I	CCWWGG	4 cut(s)	828, 893, 2527, 3244
Bst2BI	CACGAG	2 cut(s)	1113, 3210
Bst2UI	CCWGG	7 cut(s)	345, 594, 799, 989, 1677, 2635, 3356
Bst6I	CTCTTC	5 cut(s)	1732, 1780, 3027, 3141, 3394
BstAFI	CTTAAG	1 cut(s)	575
BstAPI	GCANNNNNTGC	2 cut(s)	130, 1898
BstAUI	TGTACA	2 cut(s)	1403, 2785
BstBAI	YACGTR	3 cut(s)	160, 1655, 2951
BstBI	TTCGAA	1 cut(s)	1992
BstDSI	CCRYGG	2 cut(s)	828, 893
BstFNI	CGCG	2 cut(s)	424, 3319
BstH2I	RGCGCY	1 cut(s)	644
BstHHI	GCGC	5 cut(s)	135, 643, 808, 3262, 3321
BstMAI	GTCTC	7 cut(s)	286, 460, 521, 608, 1734, 2683, 2713
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	9 cut(s)	130, 141, 321, 799, 812, 1298, 1898, 1948, 2594
BstNI	CCWGG	7 cut(s)	345, 594, 799, 989, 1677, 2635, 3356
BstNSI	RCATGY	2 cut(s)	1171, 2736
BstSFI	CTRYAG	7 cut(s)	429, 1009, 1293, 1377, 1899, 1914, 2331
BstSLI	GKGCMC	4 cut(s)	524, 1504, 1944, 2702
BstSNI	TACGTA	1 cut(s)	2951
BstUI	CGCG	2 cut(s)	424, 3319
BstV2I	GAAGAC	1 cut(s)	2245
BstX2I	RGATCY	5 cut(s)	184, 885, 1546, 2843, 2861
BstYI	RGATCY	5 cut(s)	184, 885, 1546, 2843, 2861
Bsu15I	ATCGAT	1 cut(s)	2665
Bsu36I	CCTNAGG	2 cut(s)	620, 980
BsuI	GTATCC	2 cut(s)	2929, 3142
BsuRI	GGCC	5 cut(s)	41, 448, 892, 2981, 3354
BsuTUI	ATCGAT	1 cut(s)	2665
BtgI	CCRYGG	2 cut(s)	828, 893
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	7 cut(s)	247, 438, 1430, 1487, 1942, 2758, 3012
BveI	ACCTGC	3 cut(s)	1871, 2579, 3388
CaiI	CAGNNNCTG	8 cut(s)	97, 567, 866, 1301, 2285, 2288, 2681, 3098
CciI	TCATGA	2 cut(s)	337, 3142
CfoI	GCGC	5 cut(s)	135, 643, 808, 3262, 3321
Cfr13I	GGNCC	4 cut(s)	415, 616, 1269, 1679
ClaI	ATCGAT	1 cut(s)	2665
Csp6I	GTAC	7 cut(s)	161, 277, 1074, 1110, 1404, 1421, 2786
CspCI	CAANNNNNGTGG	4 cut(s)	459, 494, 3176, 3211
CviQI	GTAC	7 cut(s)	161, 277, 1074, 1110, 1404, 1421, 2786
DraI	TTTAAA	1 cut(s)	2989
DriI	GACNNNNNGTC	1 cut(s)	1171
EaeI	YGGCCR	3 cut(s)	39, 890, 2979
Eam1104I	CTCTTC	5 cut(s)	1732, 1780, 3027, 3141, 3394
Eam1105I	GACNNNNNGTC	1 cut(s)	1171
EarI	CTCTTC	5 cut(s)	1732, 1780, 3027, 3141, 3394
EciI	GGCGGA	2 cut(s)	54, 411
Eco105I	TACGTA	1 cut(s)	2951
Eco130I	CCWWGG	4 cut(s)	828, 893, 2527, 3244
Eco31I	GGTCTC	3 cut(s)	460, 608, 2713
Eco47I	GGWCC	4 cut(s)	415, 616, 1269, 1679
Eco57I	CTGAAG	1 cut(s)	2367
Eco81I	CCTNAGG	2 cut(s)	620, 980
EcoO109I	RGGNCCY	3 cut(s)	415, 616, 1679
EcoRI	GAATTC	2 cut(s)	377, 2625
EcoRII	CCWGG	7 cut(s)	343, 592, 797, 987, 1675, 2633, 3354
EcoT14I	CCWWGG	4 cut(s)	828, 893, 2527, 3244
EcoT22I	ATGCAT	4 cut(s)	37, 974, 2734, 2738
ErhI	CCWWGG	4 cut(s)	828, 893, 2527, 3244
Esp3I	CGTCTC	1 cut(s)	286
FaqI	GGGAC	3 cut(s)	401, 1255, 2459
FauI	CCCGC	4 cut(s)	317, 417, 710, 1280
FbaI	TGATCA	2 cut(s)	2230, 2755
FblI	GTMKAC	1 cut(s)	2297
FspBI	CTAG	7 cut(s)	1367, 1683, 1734, 2007, 2015, 2898, 3345
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	5 cut(s)	134, 642, 807, 3261, 3320
GsaI	CCCAGC	1 cut(s)	2517
GsuI	CTGGAG	3 cut(s)	1659, 2103, 2658
HaeII	RGCGCY	1 cut(s)	644
HaeIII	GGCC	5 cut(s)	41, 448, 892, 2981, 3354
HapII	CCGG	6 cut(s)	42, 70, 355, 441, 1592, 2770
HhaI	GCGC	5 cut(s)	135, 643, 808, 3262, 3321
Hin6I	GCGC	5 cut(s)	133, 641, 806, 3260, 3319
HinP1I	GCGC	5 cut(s)	133, 641, 806, 3260, 3319
HincII	GTYRAC	2 cut(s)	1165, 2308
HindII	GTYRAC	2 cut(s)	1165, 2308
HpaI	GTTAAC	1 cut(s)	2308
HpaII	CCGG	6 cut(s)	42, 70, 355, 441, 1592, 2770
HphI	GGTGA	9 cut(s)	638, 860, 1228, 1454, 2411, 2624, 2947, 3247, 3266
Hpy99I	CGWCG	3 cut(s)	152, 209, 1234
HpyAV	CCTTC	9 cut(s)	782, 1099, 1207, 1479, 1919, 1973, 2933, 2965, 2996
HpyCH4IV	ACGT	7 cut(s)	159, 279, 1654, 1699, 1996, 2064, 2950
HpyF10VI	GCNNNNNNNGC	9 cut(s)	130, 141, 321, 799, 812, 1298, 1898, 1948, 2594
HpySE526I	ACGT	7 cut(s)	159, 279, 1654, 1699, 1996, 2064, 2950
HspAI	GCGC	5 cut(s)	133, 641, 806, 3260, 3319
KflI	GGGWCCC	1 cut(s)	415
Ksp22I	TGATCA	2 cut(s)	2230, 2755
KspAI	GTTAAC	1 cut(s)	2308
LguI	GCTCTTC	2 cut(s)	1780, 3027
LmnI	GCTCC	8 cut(s)	67, 714, 820, 984, 1289, 1395, 2084, 2677
MaeI	CTAG	7 cut(s)	1367, 1683, 1734, 2007, 2015, 2898, 3345
MaeII	ACGT	7 cut(s)	159, 279, 1654, 1699, 1996, 2064, 2950
MaeIII	GTNAC	7 cut(s)	991, 1529, 2180, 2639, 2743, 3005, 3085
MbiI	CCGCTC	2 cut(s)	717, 1398
MflI	RGATCY	5 cut(s)	184, 885, 1546, 2843, 2861
MhlI	GDGCHC	5 cut(s)	524, 817, 1504, 1944, 2702
MlsI	TGGCCA	2 cut(s)	892, 2981
MluNI	TGGCCA	2 cut(s)	892, 2981
MlyI	GAGTC	3 cut(s)	567, 2157, 3320
MmeI	TCCRAC	7 cut(s)	228, 255, 276, 1591, 2047, 2585, 3360
Mox20I	TGGCCA	2 cut(s)	892, 2981
Mph1103I	ATGCAT	4 cut(s)	37, 974, 2734, 2738
MroXI	GAANNNNTTC	1 cut(s)	2522
MscI	TGGCCA	2 cut(s)	892, 2981
MslI	CAYNNNNRTG	5 cut(s)	260, 726, 833, 2461, 2741
Msp20I	TGGCCA	2 cut(s)	892, 2981
MspA1I	CMGCKG	3 cut(s)	1826, 2285, 3098
MspCI	CTTAAG	1 cut(s)	575
MspI	CCGG	6 cut(s)	42, 70, 355, 441, 1592, 2770
MvaI	CCWGG	7 cut(s)	345, 594, 799, 989, 1677, 2635, 3356
MvnI	CGCG	2 cut(s)	424, 3319
MwoI	GCNNNNNNNGC	9 cut(s)	130, 141, 321, 799, 812, 1298, 1898, 1948, 2594
NciI	CCSGG	4 cut(s)	43, 70, 356, 441
NcoI	CCATGG	2 cut(s)	828, 893
NheI	GCTAGC	1 cut(s)	2014
NmeAIII	GCCGAG	1 cut(s)	1334
NmuCI	GTSAC	6 cut(s)	1529, 2180, 2639, 2743, 3005, 3085
NsbI	TGCGCA	1 cut(s)	134
NsiI	ATGCAT	4 cut(s)	37, 974, 2734, 2738
NspI	RCATGY	2 cut(s)	1171, 2736
NspV	TTCGAA	1 cut(s)	1992
PaeI	GCATGC	1 cut(s)	2736
PagI	TCATGA	2 cut(s)	337, 3142
PciI	ACATGT	1 cut(s)	1167
PciSI	GCTCTTC	2 cut(s)	1780, 3027
PcsI	WCGNNNNNNNCGW	3 cut(s)	156, 201, 2662
PdmI	GAANNNNTTC	1 cut(s)	2522
PfeI	GAWTC	7 cut(s)	197, 571, 653, 899, 2142, 2553, 3279
PflFI	GACNNNGTC	1 cut(s)	152
PflMI	CCANNNNNTGG	2 cut(s)	1838, 3098
PfoI	TCCNGGA	1 cut(s)	1675
PleI	GAGTC	3 cut(s)	566, 2156, 3320
PpsI	GAGTC	3 cut(s)	566, 2156, 3320
Ppu21I	YACGTR	3 cut(s)	160, 1655, 2951
PpuMI	RGGWCCY	3 cut(s)	415, 616, 1679
PscI	ACATGT	1 cut(s)	1167
Psp5II	RGGWCCY	3 cut(s)	415, 616, 1679
Psp6I	CCWGG	7 cut(s)	343, 592, 797, 987, 1675, 2633, 3354
PspFI	CCCAGC	1 cut(s)	2513
PspGI	CCWGG	7 cut(s)	343, 592, 797, 987, 1675, 2633, 3354
PspPI	GGNCC	4 cut(s)	415, 616, 1269, 1679
PspPPI	RGGWCCY	3 cut(s)	415, 616, 1679
PstI	CTGCAG	6 cut(s)	433, 1013, 1297, 1381, 1903, 2335
PstNI	CAGNNNCTG	8 cut(s)	97, 567, 866, 1301, 2285, 2288, 2681, 3098
PsuI	RGATCY	5 cut(s)	184, 885, 1546, 2843, 2861
PsyI	GACNNNGTC	1 cut(s)	152
PvuII	CAGCTG	2 cut(s)	2285, 3098
RsaI	GTAC	7 cut(s)	162, 278, 1075, 1111, 1405, 1422, 2787
RsaNI	GTAC	7 cut(s)	161, 277, 1074, 1110, 1404, 1421, 2786
RseI	CAYNNNNRTG	5 cut(s)	260, 726, 833, 2461, 2741
SapI	GCTCTTC	2 cut(s)	1780, 3027
Sau96I	GGNCC	4 cut(s)	415, 616, 1269, 1679
SchI	GAGTC	3 cut(s)	567, 2157, 3320
SduI	GDGCHC	5 cut(s)	524, 817, 1504, 1944, 2702
SfcI	CTRYAG	7 cut(s)	429, 1009, 1293, 1377, 1899, 1914, 2331
SfuI	TTCGAA	1 cut(s)	1992
SinI	GGWCC	4 cut(s)	415, 616, 1269, 1679
SmiMI	CAYNNNNRTG	5 cut(s)	260, 726, 833, 2461, 2741
SmlI	CTYRAG	4 cut(s)	575, 1023, 1550, 3080
SmoI	CTYRAG	4 cut(s)	575, 1023, 1550, 3080
SnaBI	TACGTA	1 cut(s)	2951
SpeI	ACTAGT	2 cut(s)	1366, 2897
SphI	GCATGC	1 cut(s)	2736
SspMI	CTAG	7 cut(s)	1367, 1683, 1734, 2007, 2015, 2898, 3345
StyI	CCWWGG	4 cut(s)	828, 893, 2527, 3244
TaiI	ACGT	7 cut(s)	162, 282, 1657, 1702, 1999, 2067, 2953
TaqI	TCGA	5 cut(s)	147, 1229, 1992, 2242, 2665
TaqII	GACCGA	1 cut(s)	2250
TatI	WGTACW	3 cut(s)	1073, 1403, 2785
TauI	GCSGC	2 cut(s)	396, 2217
TfiI	GAWTC	7 cut(s)	197, 571, 653, 899, 2142, 2553, 3279
TscAI	CASTG	7 cut(s)	247, 438, 1430, 1487, 1949, 2758, 3019
TseFI	GTSAC	6 cut(s)	1529, 2180, 2639, 2743, 3005, 3085
Tsp45I	GTSAC	6 cut(s)	1529, 2180, 2639, 2743, 3005, 3085
TspDTI	ATGAA	9 cut(s)	354, 370, 666, 1226, 1682, 2451, 2522, 3128, 3159
TspGWI	ACGGA	3 cut(s)	1373, 3124, 3272
TspRI	CASTG	7 cut(s)	247, 438, 1430, 1487, 1949, 2758, 3019
Tth111I	GACNNNGTC	1 cut(s)	152
Van91I	CCANNNNNTGG	2 cut(s)	1838, 3098
Vha464I	CTTAAG	1 cut(s)	575
VneI	GTGCAC	1 cut(s)	520
VpaK11BI	GGWCC	4 cut(s)	415, 616, 1269, 1679
XapI	RAATTY	6 cut(s)	377, 405, 1220, 1752, 2625, 3167
XbaI	TCTAGA	1 cut(s)	3344
XceI	RCATGY	2 cut(s)	1171, 2736
XcmI	CCANNNNNNNNNTGG	2 cut(s)	98, 682
XmiI	GTMKAC	1 cut(s)	2297
XmnI	GAANNNNTTC	1 cut(s)	2522
XspI	CTAG	7 cut(s)	1367, 1683, 1734, 2007, 2015, 2898, 3345
Zsp2I	ATGCAT	4 cut(s)	37, 974, 2734, 2738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.