Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004616

Physical Location & Seq

Genomic Coordinates Forward (+)

8861797 .. 8862123

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGATCAAACCTGAACAGTCTGTGGAGGTCTCAGTTCATCACGAAGAGTTTCATACCTTGGAAGAATTTGTTGATGGCATCCCTCAAAATTGGTGGTGCGAAGACACCCGCGACAAGGAAGCGATTTTAATGGTCAGTGTCCAAGGTAGTTGCTCAGCTCAAACATGTAGTCACAGAGTTCGAGTGCGGCATTGCTTCTCAGCCAAGACCCGCATGGACTCAAAATCCAACAGCTCTAAAAAATGCCAGGGAAGTCCAGTTCACAGGTCTGAAGTTCGGCAACCTAACGTTTCAAGCGAAACCAACTTAAAAAATCCTAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

109

Amino Acids

12.34

Weight (kDa)

7.71

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig-like_IP5PC_F	PF23755	1 - 65	4.8e-32	IP5P C-F Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05630 AT1G05630 AT1G05630 AT2G31830 AT2G31830 AT2G31830 AT2G43900 AT2G43900
fragaria_vesca	FvH4_5g18650 FvH4_5g18650 FvH4_5g18650 FvH4_5g18650
malus_domestica	MD00G1087600.v1.1 MD15G1143600.v1.1
prunus_persica	Prupe.7G062000_v2.0.a1
pyrus_communis	pycom15g12950 pycom15g12960 pycom15g12970 pycom290g00230
rosa_chinensis	RchiOBHm_Chr7g0176851
rosa_laevigata	RLG00000005579
rosa_multiflora	Rmu_co8238923.1_g000001 Rmu_sc0005310.1_g000054 Rmu_sc0027976.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276340
rosa_rugosa	Rorug06G0401200
rosa_samantha	Rh7AG000500 Rh7BG000900 Rh7CG000500 Rh7DG000700
rosa_wichuraiana	Rw7G000040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	3 cut(s)	109, 187, 211
AclI	AACGTT	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	246
AloI	GAACNNNNNNTCC	2 cut(s)	243, 275
AluBI	AGCT	3 cut(s)	158, 234, 324
AluI	AGCT	3 cut(s)	158, 234, 324
Alw26I	GTCTC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	154, 186
Asp700I	GAANNNNTTC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	108
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	318
BisI	GCNGC	1 cut(s)	188
BlpI	GCTNAGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	3 cut(s)	57, 142, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	3 cut(s)	57, 142, 247
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	3 cut(s)	45, 168, 213
BseNI	ACTGG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	34
Bso31I	GGTCTC	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	154
BspACI	CCGC	3 cut(s)	109, 187, 211
BspCNI	CTCAG	3 cut(s)	44, 167, 212
BspFNI	CGCG	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	3 cut(s)	57, 142, 247
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	2 cut(s)	57, 142
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	31, 154, 199
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	3
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	142
CspCI	CAANNNNNGTGG	2 cut(s)	74, 109
CviAII	CATG	2 cut(s)	165, 214
CviJI	RGCY	4 cut(s)	158, 203, 234, 324
CviKI_1	RGCY	4 cut(s)	158, 203, 234, 324
DdeI	CTNAG	3 cut(s)	31, 154, 199
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	57, 142
Eco31I	GGTCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	2 cut(s)	57, 142
ErhI	CCWWGG	2 cut(s)	57, 142
FaeI	CATG	2 cut(s)	168, 217
FaiI	YATR	3 cut(s)	54, 166, 215
FatI	CATG	2 cut(s)	164, 213
FauI	CCCGC	2 cut(s)	116, 218
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	168, 217
HinfI	GANTC	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	288
HpyF3I	CTNAG	3 cut(s)	31, 154, 199
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	168, 217
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	5 cut(s)	24, 233, 250, 260, 270
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	56, 74, 113
MluCI	AATT	2 cut(s)	65, 88
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	19, 93
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	2 cut(s)	128, 308
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	111
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	168, 217
NmuCI	GTSAC	1 cut(s)	170
NspI	RCATGY	1 cut(s)	168
PciI	ACATGT	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	164
Psp1406I	AACGTT	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	128, 308
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	248
SfaNI	GCATC	1 cut(s)	87
Sse9I	AATT	2 cut(s)	65, 88
SsiI	CCGC	3 cut(s)	109, 187, 211
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	2 cut(s)	57, 142
TaaI	ACNGT	1 cut(s)	18
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	181
TasI	AATT	2 cut(s)	65, 88
TauI	GCSGC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	128, 308
Tru9I	TTAA	2 cut(s)	128, 308
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	26, 41
TspRI	CASTG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.