pycom15g13540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009923
Physical Location & Seq
Reverse (-)
9209261 .. 9210787
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 765 bp
ATGAAGAAGATGAAGGGGATTGTTTCTGATGCTATGGAGGACCAGAGGAACAGGTTCAAGCACCAGAGTCTCATGCAGGACTATGAGGAGCTGCAGAAGGATGCAGATGCTACGAAGAAAAAATTGCAGATAATGAAACAGAAAAAGTCTATGCTCGTAGCTGAAGTAAGGTTTTTGAGGAGAAGATATAAATACTTAATAGGGAACCCGTCAATGAACCCTCGACCAAAGCAAGATGTTGTGCAAACACACAATTTAGAATCCCAGCGCGTCACCTATTTGAAGGGAAAAAGTTCCAGCAAGAAGGAATCTGCTTCACGGTACCCTCTTCCTGCATTAGACTTGAACAAAAAGGAAAAGGTTAAACATGGAATGGAAGACATTGTGCAGAAACCTCCTCCAAAATTTGGATTAAACCTTAATGCAAGGGCACTTGGCGGAAAGGAAGCTACTTTGCGAACCCCCACTCCAAACTTTGACTTAAATCAGAAGGAAAGGGTTCAGAGTGGGAAGGAATCGATAAAGCGAAAGAACATTCCAGTTTTTGACTTGAACCAGATTTCGAGGGAGGAGGAGGAGGAGGAATTTCAAGCCAATTATGAGCCAATGAGGATAAAGGAGCCCAACAAAAGTTTACGCAGAGCGGTAAATGACGAGCAGCACAATGACATGAAGTTACTGGCTTGCAGGACTATAGGGAACGGGTCAAATCGATCGGGGAAGAGGAAGATTACTTGGCAAGATCAGGTGGCTTTACGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

29.55

Weight (kDa)

9.97

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 321
AccB7I CCANNNNNTGG 1 cut(s) 407
AccBSI CCGCTC 1 cut(s) 644
AccII CGCG 1 cut(s) 270
AciI CCGC 2 cut(s) 438, 644
AcsI RAATTY 2 cut(s) 404, 584
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 5 cut(s) 58, 283, 346, 553, 590
AloI GAACNNNNNNTCC 2 cut(s) 451, 483
AluBI AGCT 3 cut(s) 91, 161, 449
AluI AGCT 3 cut(s) 91, 161, 449
Alw26I GTCTC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 91, 658
ApoI RAATTY 2 cut(s) 404, 584
Asp700I GAANNNNTTC 3 cut(s) 53, 292, 498
Asp718I GGTACC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 433
BanI GGYRCC 1 cut(s) 321
BanII GRGCYC 1 cut(s) 624
BbsI GAAGAC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 78, 670
BcoDI GTCTC 1 cut(s) 74
BfmI CTRYAG 2 cut(s) 92, 693
BisI GCNGC 2 cut(s) 92, 659
BlsI GCNGC 2 cut(s) 93, 660
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 3 cut(s) 206, 323, 621
BmsI GCATC 3 cut(s) 19, 91, 97
BpiI GAAGAC 1 cut(s) 384
Bsa29I ATCGAT 2 cut(s) 518, 712
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse1I ACTGG 2 cut(s) 539, 684
BseCI ATCGAT 2 cut(s) 518, 712
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 407
BseNI ACTGG 2 cut(s) 539, 684
BseRI GAGGAG 7 cut(s) 101, 193, 387, 584, 587, 590, 593
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 2 cut(s) 78, 670
BseYI CCCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 270
Bsh1285I CGRYCG 1 cut(s) 716
BshNI GGYRCC 1 cut(s) 321
BshVI ATCGAT 2 cut(s) 518, 712
BsiEI CGRYCG 1 cut(s) 716
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 433, 624
Bsp143I GATC 2 cut(s) 713, 742
BspACI CCGC 2 cut(s) 438, 644
BspDI ATCGAT 2 cut(s) 518, 712
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 206, 323, 621
BspMAI CTGCAG 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 321
BsrBI CCGCTC 1 cut(s) 644
BsrI ACTGG 2 cut(s) 539, 684
BssMI GATC 2 cut(s) 713, 742
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 2 cut(s) 333, 716
BstC8I GCNNGC 1 cut(s) 685
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 2 cut(s) 716, 745
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 713, 742
BstMCI CGRYCG 1 cut(s) 716
BstSFI CTRYAG 2 cut(s) 92, 693
BstSLI GKGCMC 1 cut(s) 433
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 78, 670
BstV2I GAAGAC 1 cut(s) 384
Bsu15I ATCGAT 2 cut(s) 518, 712
BsuTUI ATCGAT 2 cut(s) 518, 712
BtsCI GGATG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 685
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 40
ClaI ATCGAT 2 cut(s) 518, 712
CseI GACGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 322
CviAII CATG 3 cut(s) 73, 368, 670
CviJI RGCY 8 cut(s) 91, 161, 449, 593, 604, 622, 683, 752
CviKI_1 RGCY 8 cut(s) 91, 161, 449, 593, 604, 622, 683, 752
CviQI GTAC 1 cut(s) 322
DpnI GATC 2 cut(s) 715, 744
DpnII GATC 2 cut(s) 713, 742
Eam1104I CTCTTC 2 cut(s) 333, 716
EarI CTCTTC 2 cut(s) 333, 716
EciI GGCGGA 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 624
Eco47I GGWCC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 624
FaeI CATG 3 cut(s) 76, 371, 673
FaiI YATR 9 cut(s) 35, 74, 84, 152, 189, 369, 600, 671, 695
FatI CATG 3 cut(s) 72, 367, 669
Fnu4HI GCNGC 2 cut(s) 92, 659
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 2 cut(s) 92, 659
GlaI GCGC 1 cut(s) 269
GluI GCNGC 2 cut(s) 92, 659
GsaI CCCAGC 1 cut(s) 268
HgaI GACGC 1 cut(s) 259
HhaI GCGC 1 cut(s) 270
Hin1II CATG 3 cut(s) 76, 371, 673
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 4 cut(s) 67, 260, 308, 515
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 635
Hpy188I TCNGA 3 cut(s) 28, 489, 504
Hpy8I GTNNAC 1 cut(s) 635
HpyAV CCTTC 6 cut(s) 7, 91, 277, 298, 484, 505
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4V TGCA 9 cut(s) 76, 94, 104, 127, 244, 335, 388, 425, 687
Hsp92II CATG 3 cut(s) 76, 371, 673
HspAI GCGC 1 cut(s) 268
KpnI GGTACC 1 cut(s) 325
Kzo9I GATC 2 cut(s) 713, 742
LmnI GCTCC 2 cut(s) 88, 619
Lsp1109I GCAGC 2 cut(s) 78, 670
LweI GCATC 3 cut(s) 19, 91, 97
MaeIII GTNAC 2 cut(s) 271, 675
MalI GATC 2 cut(s) 715, 744
MbiI CCGCTC 1 cut(s) 644
MboI GATC 2 cut(s) 713, 742
MboII GAAGA 8 cut(s) 16, 19, 127, 195, 320, 389, 733, 739
MhlI GDGCHC 2 cut(s) 433, 624
MluCI AATT 5 cut(s) 122, 253, 404, 584, 595
MlyI GAGTC 1 cut(s) 76
MroXI GAANNNNTTC 3 cut(s) 53, 292, 498
MseI TTAA 5 cut(s) 197, 363, 413, 420, 482
MvnI CGCG 1 cut(s) 270
NdeII GATC 2 cut(s) 713, 742
NlaIII CATG 3 cut(s) 76, 371, 673
NlaIV GGNNCC 3 cut(s) 206, 323, 621
NmuCI GTSAC 1 cut(s) 271
PdmI GAANNNNTTC 3 cut(s) 53, 292, 498
PfeI GAWTC 3 cut(s) 260, 308, 515
PflMI CCANNNNNTGG 1 cut(s) 407
PkrI GCNGC 2 cut(s) 93, 660
Ple19I CGATCG 1 cut(s) 716
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 3 cut(s) 206, 323, 621
PspPI GGNCC 1 cut(s) 40
PstI CTGCAG 1 cut(s) 96
PvuI CGATCG 1 cut(s) 716
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SaqAI TTAA 5 cut(s) 197, 363, 413, 420, 482
SatI GCNGC 2 cut(s) 92, 659
Sau3AI GATC 2 cut(s) 713, 742
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 1 cut(s) 76
SduI GDGCHC 2 cut(s) 433, 624
SfaNI GCATC 3 cut(s) 19, 91, 97
SfcI CTRYAG 2 cut(s) 92, 693
SinI GGWCC 1 cut(s) 40
Sse9I AATT 5 cut(s) 122, 253, 404, 584, 595
SsiI CCGC 2 cut(s) 438, 644
TaaI ACNGT 1 cut(s) 321
TaqI TCGA 4 cut(s) 223, 518, 563, 712
TasI AATT 5 cut(s) 122, 253, 404, 584, 595
TfiI GAWTC 3 cut(s) 260, 308, 515
Tru1I TTAA 5 cut(s) 197, 363, 413, 420, 482
Tru9I TTAA 5 cut(s) 197, 363, 413, 420, 482
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 2 cut(s) 91, 658
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 5 cut(s) 17, 26, 149, 230, 686
Van91I CCANNNNNTGG 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 2 cut(s) 404, 584
XmnI GAANNNNTTC 3 cut(s) 53, 292, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.