Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009301

Physical Location & Seq

Genomic Coordinates Reverse (-)

9293337 .. 9297524

Gene Structure 4188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2418 bp

ATGGTAAACTTGCTGGAATCCATGCATAAATGCTGTTTACCTTCTGGTGTGCCAAGCGAATCCCCAAGTGCCTACGAGAAGAGCTTGGTACACAAGATTTTTGGCGGTCGCCTTCGAAGCCAGGTCAAATGTTTGCAGTGCTCCTATTGCTCCAACAAGTTTGACCCGTTCTTAGATTTAAGTCTTGAAATATTCAACGCAGATTCCTTGCAAAAAGCACTTGCAAAATTTACTGCCTCAGAACAGTTAGATGGAGGGGAAAGGCAATATCAGTGCCAACGATGCAATCAGAAAGTTCGGGCTCTTAAACAGATGACTGTTCAAAAGCCTCCTTATGTACTTACCATCCATTTGAAGCGATTTCGTGCACATGATCCTGGACGAAAAATTGACAGACATGTAAAATTTGGCCCTACATTGGATTTGAAGCCATTTGTTAGTGGTTCCTACGAAGGGGATTTGAAATATACTCTCTATGGGGTTCTTGTTCATTGTGGGGCTACCACCTATTCTGGCCATTATTATTGCTATGTTCGCACATCAAGTGGCATGTGGTACTCTCTTGATGACAACCAGGTATACCAAGTTAGTGAGAGGATTGTTTTAGAACAGAAGGCTTACATGTTGTTTTATGTCCGCGATAGAAGAAATATAATACCAAGGAAGCCTGTTGAAGTTGCTCGAAAGGAGAATTTCAATGCAAATGGTGCTGGATTAAAAACTCGTTGCACTAACAACCAAGGCTTCAAAGGACCGGTTCAGAATGTTTCTGTTGAGGGCAGATCAAGTGGTCCATCCTCATCTATCGTTATGATGCAAAAATCAACTATAGTTCCACCTATGGTGCCCCTTTTGAAGGAAGCATCAACTAACTGCCAGACAGTGGCAGGAAATATGGTGCCTATGAAGGAGCCTGTTTCGGAGTCTTCTCCATCTTTATCAAAAGACTTGCTGAAAGGGTTTTCCATTCCAAGCCGCAGCAGTGGTGGTGCTTCTGAATCTAAAAATGCGGCAGAAAATATGGTGTGTGTGAAGGAACCTGTTTTAGATTCTTCTTCATCATTACCAAAGGATTCATTGAAAGGGATTTCCATTCCAATTCCCACATTGGGAAAAGACATGCTACCATCACCTCCAACTAGAAATGGTGGCACTTCGGATCCTGAAAATGCCACAGCTGCAAAAGCTGATGGCAATAAAACTGACCTTAATGGGAGAGGAAGGTCAGTTGAAAACAGTGGTGTTTCCAGTGTCATAGCACCCAATGTCAAGGACCCTGAAAGCCTTGAGGCTGCTAAACCCATACTAGATGAGACCCCTCATAATAATTTTGTATCCTCTAAGGGAGACTTGAGTACGGCATCCGGAGTTCCTAGCGGTATGAAAAAGGAGGGAATTCACACTGTAAAATCATCAGATCAACCAAGCTCTAAAATTAGTCAGGTTGGAAGTTTTACCAATGGAAGTGCTGCTTGTAATGTTTTGGGTGAGAAGACTAGTGATTCAGGCCAAAAAGTAGTAATTAATGAGTCTGCAAAATTGTCTGGCTCCTCATTAATTGTGACATATGGATCGATGCTTGTGAAATCTTCTGATTGCAAACGCCATAGAAAATTGAAAAAGAAGCAGCTGAAGTCTAAGGTTGCATCCATGCAGTTACGACCTAGCTTACTTTCCCGGGCGGTCTTAAGCGTACAGAAGAAGAAAAAACACAAAAGGAGTAAGCACCCATCTTCAGATACCAGTAGCCTTCTTAAGAAACACGTTATGGACAATTCTTGCTTATCTGATATGGGGCCGTCTACATCTGAGCAAACCCAGTCAATTCCCTTGGTTTCTACTCCTTCTAAGCAAAAGTCTAAGAGGAAGGGGACCAAATCTGGCTTAAAAAAGGATGCAGATGGAACTGATAAAAAGCAGGAAATGAAATCTCATGGTCATTCTTTAATGGCTGCCAATAAGGGTGAGTTTAGAGAAAGTGTTGGTCAGAATGGTACAGTGCTTGCAAGTGATAAAAGACTACAAATTGGTAATGTCTCTAGCTCTTGCTCAAAAGAAAATCTGCGGGAGACCGGGGAAAATGATACCCCACACAATTGTAAAAGAGACAGAATGCAAAATGGAGGGATTGGTGTGCTGACCCGAGGTCTTGACGAGACAATGGTTGCACGTTGGGACGGAATAGAATTGCCTCCTCCTCGTATTGTAGAATCAAGCCGTGCAAAGAGTGTCAGCATTGGTTATATACCTGACGAATGGGATGAAGAATATGATCGCGGAAAGAGAAAGAAGGTAAGGCAACCCAAAGAAACATTTGGCGGACCAAATCCATTCCAAAAGATTGCAACCCAGAGATCACAGATGAAAAAGACAAAGCCAGACAGGTATGGTTCTGGAAATCACCCCCTCCGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

806

Amino Acids

88.01

Weight (kDa)

9.63

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	2 - 211	5.9e-36	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	19 - 193	5.1e-10	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57990
fragaria_vesca	FvH4_1g01010 FvH4_1g01010 FvH4_1g01010
malus_domestica	MD02G1008300.v1.1 MD15G1152500.v1.1
prunus_persica	Prupe.7G262200_v2.0.a1
pyrus_communis	pycom02g00720 pycom15g13710
rosa_chinensis	RchiOBHm_Chr2g0085751
rosa_laevigata	RLG00000015716
rosa_multiflora	Rmu_sc0009759.1_g000004 Rmu_sc0023131.1_g000003 Rmu_sc0033740.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155070
rosa_rugosa	Rorug01G0462900 Rorug01G0462900
rosa_samantha	Rh2AG012000 Rh2BG012600 Rh2CG013400 Rh2DG014400
rosa_wichuraiana	Rw2G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	844, 898
AccB7I	CCANNNNNTGG	1 cut(s)	883
AccI	GTMKAC	2 cut(s)	579, 1802
AccII	CGCG	2 cut(s)	639, 2277
AccIII	TCCGGA	2 cut(s)	1364, 2409
AciI	CCGC	9 cut(s)	105, 637, 976, 1010, 1377, 1682, 2065, 2277, 2319
AclWI	GGATC	4 cut(s)	368, 1154, 1167, 1579
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	4 cut(s)	227, 404, 691, 1395
AcuI	CTGAAG	2 cut(s)	1652, 1719
AfaI	GTAC	6 cut(s)	90, 339, 557, 1357, 1695, 1996
AfiI	CCNNNNNNNGG	5 cut(s)	418, 453, 856, 883, 1109
AflII	CTTAAG	2 cut(s)	1687, 1754
AflIII	ACRYGT	3 cut(s)	397, 621, 1762
AgeI	ACCGGT	1 cut(s)	754
AhdI	GACNNNNNGTC	1 cut(s)	2145
AhlI	ACTAGT	1 cut(s)	1496
AjnI	CCWGG	3 cut(s)	120, 376, 573
AluBI	AGCT	7 cut(s)	84, 1178, 1187, 1428, 1630, 1668, 2043
AluI	AGCT	7 cut(s)	84, 1178, 1187, 1428, 1630, 1668, 2043
Alw21I	GWGCWC	2 cut(s)	143, 370
Alw26I	GTCTC	6 cut(s)	1307, 1341, 2041, 2063, 2100, 2150
Alw44I	GTGCAC	1 cut(s)	366
AlwI	GGATC	4 cut(s)	368, 1154, 1167, 1579
Ama87I	CYCGRG	2 cut(s)	1677, 2142
Aor13HI	TCCGGA	2 cut(s)	1364, 2409
AoxI	GGCC	4 cut(s)	409, 514, 1507, 1796
ApaLI	GTGCAC	1 cut(s)	366
ApeKI	GCWGC	6 cut(s)	978, 1178, 1292, 1469, 1627, 1952
ApoI	RAATTY	4 cut(s)	227, 404, 691, 1395
AseI	ATTAAT	2 cut(s)	1524, 1556
AsiGI	ACCGGT	1 cut(s)	754
AspS9I	GGNCC	7 cut(s)	410, 752, 791, 1273, 1796, 1872, 2321
AsuC2I	CCSGG	3 cut(s)	1678, 1679, 2074
AsuHPI	GGTGA	4 cut(s)	1122, 1499, 1976, 2393
AsuII	TTCGAA	1 cut(s)	115
AvaI	CYCGRG	2 cut(s)	1677, 2142
AvaII	GGWCC	5 cut(s)	752, 791, 1273, 1872, 2321
BaeGI	GKGCMC	2 cut(s)	370, 849
BalI	TGGCCA	1 cut(s)	516
BamHI	GGATCC	1 cut(s)	1159
BanI	GGYRCC	2 cut(s)	844, 898
BanII	GRGCYC	1 cut(s)	304
BbsI	GAAGAC	2 cut(s)	918, 1499
Bbv12I	GWGCWC	2 cut(s)	143, 370
BbvI	GCAGC	6 cut(s)	990, 1165, 1279, 1456, 1639, 1939
BccI	CCATC	8 cut(s)	245, 353, 802, 940, 1135, 1184, 1738, 1895
BceAI	ACGGC	3 cut(s)	1374, 1783, 2202
BciT130I	CCWGG	3 cut(s)	122, 378, 575
BciVI	GTATCC	1 cut(s)	1345
BcnI	CCSGG	3 cut(s)	1678, 1679, 2074
BcoDI	GTCTC	6 cut(s)	1307, 1341, 2041, 2063, 2100, 2150
BcuI	ACTAGT	1 cut(s)	1496
BfaI	CTAG	6 cut(s)	1140, 1307, 1374, 1497, 1665, 2040
BfmI	CTRYAG	1 cut(s)	828
BfrI	CTTAAG	2 cut(s)	1687, 1754
BfuI	GTATCC	1 cut(s)	1345
BisI	GCNGC	8 cut(s)	976, 979, 1011, 1179, 1293, 1470, 1628, 1953
BlsI	GCNGC	8 cut(s)	977, 980, 1012, 1180, 1294, 1471, 1629, 1954
Bme1390I	CCNGG	6 cut(s)	122, 378, 575, 1678, 1679, 2074
Bme18I	GGWCC	5 cut(s)	752, 791, 1273, 1872, 2321
BmeRI	GACNNNNNGTC	1 cut(s)	2145
BmeT110I	CYCGRG	2 cut(s)	1677, 2142
BmgT120I	GGNCC	7 cut(s)	410, 752, 791, 1273, 1796, 1872, 2321
BmrFI	CCNGG	6 cut(s)	122, 378, 575, 1678, 1679, 2074
BmrI	ACTGGG	1 cut(s)	1813
BmsI	GCATC	7 cut(s)	272, 804, 872, 1370, 1566, 1655, 1885
BmuI	ACTGGG	1 cut(s)	1813
BpiI	GAAGAC	2 cut(s)	918, 1499
Bpu14I	TTCGAA	1 cut(s)	115
BpuEI	CTTGAG	2 cut(s)	1307, 1372
BpuMI	CCSGG	3 cut(s)	1678, 1679, 2074
Bsa29I	ATCGAT	1 cut(s)	1574
BsaI	GGTCTC	2 cut(s)	1307, 2063
BsaJI	CCNNGG	6 cut(s)	659, 739, 1677, 1830, 2073, 2143
BsaWI	WCCGGW	3 cut(s)	754, 1364, 2409
Bsc4I	CCNNNNNNNGG	5 cut(s)	418, 453, 856, 883, 1109
Bse118I	RCCGGY	1 cut(s)	754
Bse1I	ACTGG	3 cut(s)	1248, 1743, 1819
BseAI	TCCGGA	2 cut(s)	1364, 2409
BseBI	CCWGG	3 cut(s)	122, 378, 575
BseCI	ATCGAT	1 cut(s)	1574
BseDI	CCNNGG	6 cut(s)	659, 739, 1677, 1830, 2073, 2143
BseGI	GGATG	6 cut(s)	345, 794, 1361, 1646, 1900, 2266
BseLI	CCNNNNNNNGG	5 cut(s)	418, 453, 856, 883, 1109
BseMII	CTCAG	2 cut(s)	252, 1800
BseNI	ACTGG	3 cut(s)	1248, 1743, 1819
BseRI	GAGGAG	3 cut(s)	1540, 2184, 2187
BseSI	GKGCMC	2 cut(s)	370, 849
BseXI	GCAGC	6 cut(s)	990, 1165, 1279, 1456, 1639, 1939
Bsh1236I	CGCG	2 cut(s)	639, 2277
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	4 cut(s)	411, 516, 1509, 1798
BshNI	GGYRCC	2 cut(s)	844, 898
BshTI	ACCGGT	1 cut(s)	754
BshVI	ATCGAT	1 cut(s)	1574
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	2 cut(s)	143, 370
BsiHKCI	CYCGRG	2 cut(s)	1677, 2142
BsiSI	CCGG	5 cut(s)	755, 1365, 1678, 2073, 2410
BslFI	GGGAC	2 cut(s)	1885, 2189
BslI	CCNNNNNNNGG	5 cut(s)	418, 453, 856, 883, 1109
BsmAI	GTCTC	6 cut(s)	1307, 1341, 2041, 2063, 2100, 2150
BsmFI	GGGAC	2 cut(s)	1885, 2189
BsmI	GAATGC	1 cut(s)	2118
BsnI	GGCC	4 cut(s)	411, 516, 1509, 1798
Bso31I	GGTCTC	2 cut(s)	1307, 2063
BsoBI	CYCGRG	2 cut(s)	1677, 2142
Bsp119I	TTCGAA	1 cut(s)	115
Bsp1286I	GDGCHC	4 cut(s)	143, 304, 370, 849
Bsp13I	TCCGGA	2 cut(s)	1364, 2409
Bsp143I	GATC	7 cut(s)	373, 782, 1159, 1417, 1571, 2272, 2354
BspACI	CCGC	9 cut(s)	105, 637, 976, 1010, 1377, 1682, 2065, 2277, 2319
BspANI	GGCC	4 cut(s)	411, 516, 1509, 1798
BspCNI	CTCAG	2 cut(s)	251, 1801
BspDI	ATCGAT	1 cut(s)	1574
BspEI	TCCGGA	2 cut(s)	1364, 2409
BspFNI	CGCG	2 cut(s)	639, 2277
BspPI	GGATC	4 cut(s)	368, 1154, 1167, 1579
BspQI	GCTCTTC	1 cut(s)	74
BspT104I	TTCGAA	1 cut(s)	115
BspT107I	GGYRCC	2 cut(s)	844, 898
BspTI	CTTAAG	2 cut(s)	1687, 1754
BspTNI	GGTCTC	2 cut(s)	1307, 2063
BsrFI	RCCGGY	1 cut(s)	754
BsrI	ACTGG	3 cut(s)	1248, 1743, 1819
BssAI	RCCGGY	1 cut(s)	754
BssECI	CCNNGG	6 cut(s)	659, 739, 1677, 1830, 2073, 2143
BssMI	GATC	7 cut(s)	373, 782, 1159, 1417, 1571, 2272, 2354
BssNAI	GTATAC	1 cut(s)	580
BssT1I	CCWWGG	3 cut(s)	659, 739, 1830
Bst1107I	GTATAC	1 cut(s)	580
Bst2UI	CCWGG	3 cut(s)	122, 378, 575
Bst4CI	ACNGT	6 cut(s)	246, 319, 883, 1238, 1405, 1999
Bst6I	CTCTTC	1 cut(s)	74
BstAFI	CTTAAG	2 cut(s)	1687, 1754
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstBI	TTCGAA	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	2004
BstDEI	CTNAG	7 cut(s)	172, 238, 1341, 1638, 1809, 1848, 1860
BstENI	CCTNNNNNAGG	1 cut(s)	854
BstF5I	GGATG	6 cut(s)	345, 794, 1361, 1646, 1900, 2266
BstFNI	CGCG	2 cut(s)	639, 2277
BstKTI	GATC	7 cut(s)	376, 785, 1162, 1420, 1574, 2275, 2357
BstMAI	GTCTC	6 cut(s)	1307, 1341, 2041, 2063, 2100, 2150
BstMBI	GATC	7 cut(s)	373, 782, 1159, 1417, 1571, 2272, 2354
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	7 cut(s)	117, 147, 282, 534, 707, 1178, 1184
BstNI	CCWGG	3 cut(s)	122, 378, 575
BstNSI	RCATGY	4 cut(s)	401, 553, 625, 1123
BstSCI	CCNGG	6 cut(s)	120, 376, 573, 1676, 1677, 2072
BstSFI	CTRYAG	1 cut(s)	828
BstSLI	GKGCMC	2 cut(s)	370, 849
BstUI	CGCG	2 cut(s)	639, 2277
BstV1I	GCAGC	6 cut(s)	990, 1165, 1279, 1456, 1639, 1939
BstV2I	GAAGAC	2 cut(s)	918, 1499
BstX2I	RGATCY	1 cut(s)	1159
BstYI	RGATCY	1 cut(s)	1159
BstZ17I	GTATAC	1 cut(s)	580
Bsu15I	ATCGAT	1 cut(s)	1574
BsuI	GTATCC	1 cut(s)	1345
BsuRI	GGCC	4 cut(s)	411, 516, 1509, 1798
BsuTUI	ATCGAT	1 cut(s)	1574
BtsCI	GGATG	6 cut(s)	345, 794, 1361, 1646, 1900, 2266
BtsI	GCAGTG	2 cut(s)	143, 988
BtsIMutI	CAGTG	8 cut(s)	143, 278, 888, 988, 1243, 1255, 1401, 2004
Cac8I	GCNNGC	1 cut(s)	2004
Cfr10I	RCCGGY	1 cut(s)	754
Cfr13I	GGNCC	7 cut(s)	410, 752, 791, 1273, 1796, 1872, 2321
Cfr9I	CCCGGG	1 cut(s)	1677
ClaI	ATCGAT	1 cut(s)	1574
CsiI	ACCWGGT	1 cut(s)	573
Csp6I	GTAC	6 cut(s)	89, 338, 556, 1356, 1694, 1995
CspAI	ACCGGT	1 cut(s)	754
CviAII	CATG	8 cut(s)	22, 371, 398, 550, 622, 1120, 1651, 1934
CviQI	GTAC	6 cut(s)	89, 338, 556, 1356, 1694, 1995
DdeI	CTNAG	7 cut(s)	172, 238, 1341, 1638, 1809, 1848, 1860
DpnI	GATC	7 cut(s)	375, 784, 1161, 1419, 1573, 2274, 2356
DpnII	GATC	7 cut(s)	373, 782, 1159, 1417, 1571, 2272, 2354
DriI	GACNNNNNGTC	1 cut(s)	2145
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	74
Eam1105I	GACNNNNNGTC	1 cut(s)	2145
EarI	CTCTTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	2334
Eco130I	CCWWGG	3 cut(s)	659, 739, 1830
Eco24I	GRGCYC	1 cut(s)	304
Eco31I	GGTCTC	2 cut(s)	1307, 2063
Eco47I	GGWCC	5 cut(s)	752, 791, 1273, 1872, 2321
Eco57I	CTGAAG	2 cut(s)	1652, 1719
Eco88I	CYCGRG	2 cut(s)	1677, 2142
EcoNI	CCTNNNNNAGG	1 cut(s)	854
EcoO109I	RGGNCCY	1 cut(s)	1273
EcoRI	GAATTC	1 cut(s)	1395
EcoRII	CCWGG	3 cut(s)	120, 376, 573
EcoT14I	CCWWGG	3 cut(s)	659, 739, 1830
EcoT22I	ATGCAT	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	304
ErhI	CCWWGG	3 cut(s)	659, 739, 1830
FaeI	CATG	8 cut(s)	25, 374, 401, 553, 625, 1123, 1654, 1937
FalI	AAGNNNNNCTT	4 cut(s)	1334, 1366, 1456, 1488
FaqI	GGGAC	2 cut(s)	1885, 2189
FatI	CATG	8 cut(s)	21, 370, 397, 549, 621, 1119, 1650, 1933
FauI	CCCGC	1 cut(s)	2058
FauNDI	CATATG	1 cut(s)	1567
FblI	GTMKAC	2 cut(s)	579, 1802
Fnu4HI	GCNGC	8 cut(s)	976, 979, 1011, 1179, 1293, 1470, 1628, 1953
FokI	GGATG	6 cut(s)	332, 781, 1348, 1633, 1907, 2273
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	8 cut(s)	976, 979, 1011, 1179, 1293, 1470, 1628, 1953
FspBI	CTAG	6 cut(s)	1140, 1307, 1374, 1497, 1665, 2040
GluI	GCNGC	8 cut(s)	976, 979, 1011, 1179, 1293, 1470, 1628, 1953
HaeIII	GGCC	4 cut(s)	411, 516, 1509, 1798
HapII	CCGG	5 cut(s)	755, 1365, 1678, 2073, 2410
Hin1II	CATG	8 cut(s)	25, 374, 401, 553, 625, 1123, 1654, 1937
HpaII	CCGG	5 cut(s)	755, 1365, 1678, 2073, 2410
HphI	GGTGA	4 cut(s)	1122, 1499, 1976, 2393
Hpy166II	GTNNAC	6 cut(s)	7, 38, 91, 368, 580, 1803
Hpy188III	TCNNGA	7 cut(s)	185, 563, 1163, 1365, 2150, 2394, 2410
Hpy8I	GTNNAC	6 cut(s)	7, 38, 91, 368, 580, 1803
HpyCH4III	ACNGT	6 cut(s)	246, 319, 883, 1238, 1405, 1999
HpyCH4IV	ACGT	2 cut(s)	1764, 2170
HpyF10VI	GCNNNNNNNGC	7 cut(s)	117, 147, 282, 534, 707, 1178, 1184
HpyF3I	CTNAG	7 cut(s)	172, 238, 1341, 1638, 1809, 1848, 1860
HpySE526I	ACGT	2 cut(s)	1764, 2170
Hsp92II	CATG	8 cut(s)	25, 374, 401, 553, 625, 1123, 1654, 1937
Kpn2I	TCCGGA	2 cut(s)	1364, 2409
Kzo9I	GATC	7 cut(s)	373, 782, 1159, 1417, 1571, 2272, 2354
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	4 cut(s)	146, 155, 910, 1553
Lsp1109I	GCAGC	6 cut(s)	990, 1165, 1279, 1456, 1639, 1939
LweI	GCATC	7 cut(s)	272, 804, 872, 1370, 1566, 1655, 1885
MabI	ACCWGGT	1 cut(s)	573
MaeI	CTAG	6 cut(s)	1140, 1307, 1374, 1497, 1665, 2040
MaeII	ACGT	2 cut(s)	1764, 2170
MaeIII	GTNAC	2 cut(s)	1561, 1656
MalI	GATC	7 cut(s)	375, 784, 1161, 1419, 1573, 2274, 2356
MboI	GATC	7 cut(s)	373, 782, 1159, 1417, 1571, 2272, 2354
MfeI	CAATTG	1 cut(s)	2095
MflI	RGATCY	1 cut(s)	1159
MhlI	GDGCHC	4 cut(s)	143, 304, 370, 849
MlsI	TGGCCA	1 cut(s)	516
MluNI	TGGCCA	1 cut(s)	516
MlyI	GAGTC	2 cut(s)	932, 1538
MmeI	TCCRAC	3 cut(s)	177, 1160, 1426
Mox20I	TGGCCA	1 cut(s)	516
Mph1103I	ATGCAT	1 cut(s)	27
MroI	TCCGGA	2 cut(s)	1364, 2409
MscI	TGGCCA	1 cut(s)	516
Msp20I	TGGCCA	1 cut(s)	516
MspA1I	CMGCKG	2 cut(s)	1178, 1630
MspCI	CTTAAG	2 cut(s)	1687, 1754
MspI	CCGG	5 cut(s)	755, 1365, 1678, 2073, 2410
MspR9I	CCNGG	6 cut(s)	122, 378, 575, 1678, 1679, 2074
MunI	CAATTG	1 cut(s)	2095
Mva1269I	GAATGC	1 cut(s)	2118
MvaI	CCWGG	3 cut(s)	122, 378, 575
MvnI	CGCG	2 cut(s)	639, 2277
MwoI	GCNNNNNNNGC	7 cut(s)	117, 147, 282, 534, 707, 1178, 1184
NciI	CCSGG	3 cut(s)	1678, 1679, 2074
NdeI	CATATG	1 cut(s)	1567
NdeII	GATC	7 cut(s)	373, 782, 1159, 1417, 1571, 2272, 2354
NlaIII	CATG	8 cut(s)	25, 374, 401, 553, 625, 1123, 1654, 1937
NmuCI	GTSAC	1 cut(s)	1561
NsiI	ATGCAT	1 cut(s)	27
NspI	RCATGY	4 cut(s)	401, 553, 625, 1123
NspV	TTCGAA	1 cut(s)	115
PciI	ACATGT	2 cut(s)	397, 621
PciSI	GCTCTTC	1 cut(s)	74
PctI	GAATGC	1 cut(s)	2118
PfeI	GAWTC	8 cut(s)	17, 59, 203, 998, 1049, 1073, 1502, 2210
PflMI	CCANNNNNTGG	1 cut(s)	883
PfoI	TCCNGGA	1 cut(s)	376
PinAI	ACCGGT	1 cut(s)	754
PkrI	GCNGC	8 cut(s)	977, 980, 1012, 1180, 1294, 1471, 1629, 1954
PleI	GAGTC	2 cut(s)	931, 1537
PpsI	GAGTC	2 cut(s)	931, 1537
PpuMI	RGGWCCY	1 cut(s)	1273
PscI	ACATGT	2 cut(s)	397, 621
PshBI	ATTAAT	2 cut(s)	1524, 1556
Psp5II	RGGWCCY	1 cut(s)	1273
Psp6I	CCWGG	3 cut(s)	120, 376, 573
PspGI	CCWGG	3 cut(s)	120, 376, 573
PspPI	GGNCC	7 cut(s)	410, 752, 791, 1273, 1796, 1872, 2321
PspPPI	RGGWCCY	1 cut(s)	1273
PsuI	RGATCY	1 cut(s)	1159
PvuII	CAGCTG	2 cut(s)	1178, 1630
RsaI	GTAC	6 cut(s)	90, 339, 557, 1357, 1695, 1996
RsaNI	GTAC	6 cut(s)	89, 338, 556, 1356, 1694, 1995
SapI	GCTCTTC	1 cut(s)	74
SatI	GCNGC	8 cut(s)	976, 979, 1011, 1179, 1293, 1470, 1628, 1953
Sau3AI	GATC	7 cut(s)	373, 782, 1159, 1417, 1571, 2272, 2354
Sau96I	GGNCC	7 cut(s)	410, 752, 791, 1273, 1796, 1872, 2321
SchI	GAGTC	2 cut(s)	932, 1538
ScrFI	CCNGG	6 cut(s)	122, 378, 575, 1678, 1679, 2074
SduI	GDGCHC	4 cut(s)	143, 304, 370, 849
SexAI	ACCWGGT	1 cut(s)	573
SfaNI	GCATC	7 cut(s)	272, 804, 872, 1370, 1566, 1655, 1885
SfcI	CTRYAG	1 cut(s)	828
SfuI	TTCGAA	1 cut(s)	115
SinI	GGWCC	5 cut(s)	752, 791, 1273, 1872, 2321
SmaI	CCCGGG	1 cut(s)	1679
SmlI	CTYRAG	4 cut(s)	1286, 1351, 1687, 1754
SmoI	CTYRAG	4 cut(s)	1286, 1351, 1687, 1754
SpeI	ACTAGT	1 cut(s)	1496
SsiI	CCGC	9 cut(s)	105, 637, 976, 1010, 1377, 1682, 2065, 2277, 2319
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	6 cut(s)	1140, 1307, 1374, 1497, 1665, 2040
StyD4I	CCNGG	6 cut(s)	120, 376, 573, 1676, 1677, 2072
StyI	CCWWGG	3 cut(s)	659, 739, 1830
TaaI	ACNGT	6 cut(s)	246, 319, 883, 1238, 1405, 1999
TaiI	ACGT	2 cut(s)	1767, 2173
TaqI	TCGA	3 cut(s)	115, 682, 1574
TatI	WGTACW	1 cut(s)	337
TauI	GCSGC	2 cut(s)	978, 1013
TfiI	GAWTC	8 cut(s)	17, 59, 203, 998, 1049, 1073, 1502, 2210
TscAI	CASTG	8 cut(s)	143, 278, 888, 988, 1243, 1255, 1408, 2004
TseFI	GTSAC	1 cut(s)	1561
TseI	GCWGC	6 cut(s)	978, 1178, 1292, 1469, 1627, 1952
Tsp45I	GTSAC	1 cut(s)	1561
TspDTI	ATGAA	8 cut(s)	479, 920, 1047, 1065, 1397, 1940, 2277, 2378
TspGWI	ACGGA	1 cut(s)	2193
TspMI	CCCGGG	1 cut(s)	1677
TspRI	CASTG	8 cut(s)	143, 278, 888, 988, 1243, 1255, 1408, 2004
Van91I	CCANNNNNTGG	1 cut(s)	883
Vha464I	CTTAAG	2 cut(s)	1687, 1754
VneI	GTGCAC	1 cut(s)	366
VpaK11BI	GGWCC	5 cut(s)	752, 791, 1273, 1872, 2321
VspI	ATTAAT	2 cut(s)	1524, 1556
XagI	CCTNNNNNAGG	1 cut(s)	854
XapI	RAATTY	4 cut(s)	227, 404, 691, 1395
XceI	RCATGY	4 cut(s)	401, 553, 625, 1123
XmaI	CCCGGG	1 cut(s)	1677
XmiI	GTMKAC	2 cut(s)	579, 1802
XspI	CTAG	6 cut(s)	1140, 1307, 1374, 1497, 1665, 2040
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.