Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009301

Physical Location & Seq

Genomic Coordinates Reverse (-)

950617 .. 956313

Gene Structure 5697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG012600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGGCCGACGTGTTCAATCCGGCAATCCGATCGGGTCAGAGTTCGGATCCGCAGCTCAAATCGGCGGAGGAGGCCTCGCCGTTTCCGAGGATCGAGTTTCATCTGGCGCGGAAGCCATTCAAGGGCTTTAACAATGACGGCAGTGACTTCCGGCCCGAGACGCTTAATCCGGGGAGCGGTGGCAGCTCGGATTCGCGTAAACCCGGCGGCCCGGGAGGTCAGGGTCAGTCGGGTTCGGGTTCCGGAGCGAAGAAGAGTGACGGGTCGGAGTTTTTGGAGAACGGGTGGGATCCGGAGCTCAGCTTTCCTATCACATTTCGGAGAATTGGTGCTGGTTTGATAAATATGGGGAATACTTGTTATCTCAATTCAGTGTTGCAGTGCCTGACATATACTGAGCCTTTAGCTGCATACCTGCAAAGTGGCAGGCATCGGAATTCTTGTCATATAAAAAATGGGTTTTGTGCTTTATGTGCCATCCAAGAACACGTCAGTCTTGCTCTGCAATCAACTAAGAGCATTTTGCCAAAGGCTCTTGTCTTCAATCTACAACGCATATCACGGAACTTTAGGAAGTCCAGACAGGAAGATGCACATGAATACATGGTAAACTTGCTGGAATCCATGCATAAATGTTGTTTACCATCTGGAGTGCCAAGTGAATCTCCTAGTGCCTATGAGAAGAGTTTGGTACACAAGATCTTTGGTGGTCGCCTTCGAAGTCGGGTCAAATGTTTGCAGTGCTCCTATTGCTCTGACAAGTTAGATCCATTCTTAGATTTAAGTCTTGAAATAGCCAAGGCAAACTCTTTGAATAAAGCACTTGTGAACTTTACTGCTGAAGAACAGTTGGATGGTGGGGAAAGGCAATATCAGTGCCAAAGATGCAATCAGAAAGTTCGAGCTATGAAACAGATGACCATTCACAAGCCGCCTAGTGTTCTGTCCATCCATTTAAAGCGGTTTCGTGCATATGACCCTGGACAGAAAATTAACAAAGAAGTTCAGTTTGGTCCTACGTTGGACTTGAGACCTTTTGTCAGTGGAGCATATCCGGAAGGAGATTTGAAATATACTCTTTATGGGGTTCTAGTTCATTGTGGGGCTAGCACCTATTCCGGCCATTATTATTGCTTTGTTCGAACATCAACTGGCATATGGCACTCTCTGGATGACAACAATGTAAGGCAAGTTCGTGAGATGACTGTTTTGCAGCAAAAGGCTTACATGTTGTTCTATGTACGTGATAGAAGAAATGTTATTCCAAGGAAGCCTGTTGATGTTGCTCAAAAGGAGTATTTCAAACCTAATGGTACTGTAAATAAAATTACTCCTACTGACAACCATTTGTCGAAAGAACCTATTCGAAAAATTGCAGTTGCGGGCAGATCAAATGATCTAGCCTCTTCTGTTGCACAAAAAGATGCATCAGCTATAGTCCCAAGGGTGTCCCATTTGAAGGAAGCATCAGTTAATCAAAATAATGGCCACATAGTGGCACAAAATATGGTGCGTAAGAAGGAAGCCATTTCAGAATCGTCTTCGAAAGCGTCATTATCAGAGGGCTCATTGGGAGGATTAGGAGAAAATATGCCACCATCTACTCTGCTTCCAAGCCGCAAAACTGGCACTTCTGATTCTGCAAGTGCTGTGGCTTCAACAACTGGTGCCAAACTAAATGACTGCAATGAGAAAGCAAGTTCAAATGATAATGATAGGGTTTCAATTATGATATCACCTACTGTGAAGGACCCTGAAATCTTAAAGGCATCTAAGCCTGTTCAAGATGAGATCCCTCAGAATAATCATGCTTCCGGTGCTGGGAATTTGAGTGTGGCTTCATCCAGAATTCCTAGTGGTTTAACATTGGAGAAGCTGAATCCTGAAAAGCCATCTGATCCACCAAGCTCTAGAATCAGTCAGGCTGAAAGTTTTACCAATGAACGTGAGAAGGCTAGTGATTGTGGCCAGACAGTGGTAGTTTTTGATTCTGCAAAATTGTCTGGCTCATCAGTTGTGACAAATAGATCATTAGATTTGGAAGCTCCTGACCGCAAGCACCCTAAAGGATTGAAAAAGAAGCACATAAAGTGTAAGGTGGTAGGCATGCATTTCCGGCCATCCTTGCTTTCTAGGGCAGTCTTACGTGTGCAGAAGAAGAAGAAGCACAAAAGGAGTAAACACCCAACTTCAGATTGTAAGAGCCACAGTAAGAAATACTTGGTAGAAAATTATTGTTCTTCATCTGATCAAGGACCATCTACATCTGAGAAAACCCAGACAGATTCCTTGGTTTCTGTCTGTTCGAAGAGAAAGAGAAACAAATCTGGCTTGAAAACGGATGAAGATGGAACTTCTAATAAGTGCTCACTGAATCCCCATGGTGATTCTTCGATGGATATTAAAGATGTAGAGTTTAGAGAGAGCCTCATTCAGAATGGAACAGTGCTTGCAAGTGATAAACAACAACAAAATGGTTTTGGCTCTTCCTCTGTTACATTGGAAAACAAAAGGGAGTCGAGAGGAACTGATACTCCACACAATTGTAAAAGAGATGCAATGCAAAATGGATGGAAGGGTGTGCTGACTCAAGGTCCAGCGGAGACAATTGTTGCACCTTGGGATGGAATAGAATTGCCTCAGTCTCATGTTGTAGAATCAAGCCATGCACAGAGTATCACCATCGGTTATGTAGGAGATGATTGGGATGAAGAATATGATCGGGGAAAGAGAAAGAAGGTAAGGCAAGCAAAACTCACCCCTGGTGGGCCAAATCCTTTCCAAATACTTGCAAACAAGAAAGCACAATTGAAGCAACCAAGGATACAAAGGTTTGATTCTGGAAATCAACCAGTCAGGATATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

955

Amino Acids

104.98

Weight (kDa)

9.4

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	111 - 413	1.2e-61	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	111 - 394	1.2e-15	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57990
fragaria_vesca	FvH4_1g01010 FvH4_1g01010 FvH4_1g01010
malus_domestica	MD02G1008300.v1.1 MD15G1152500.v1.1
prunus_persica	Prupe.7G262200_v2.0.a1
pyrus_communis	pycom02g00720 pycom15g13710
rosa_chinensis	RchiOBHm_Chr2g0085751
rosa_laevigata	RLG00000015716
rosa_multiflora	Rmu_sc0009759.1_g000004 Rmu_sc0023131.1_g000003 Rmu_sc0033740.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155070
rosa_rugosa	Rorug01G0462900 Rorug01G0462900
rosa_samantha	Rh2AG012000 Rh2BG012600 Rh2CG013400 Rh2DG014400
rosa_wichuraiana	Rw2G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	1667
AccB7I	CCANNNNNTGG	2 cut(s)	1495, 1975
AccBSI	CCGCTC	1 cut(s)	177
AccII	CGCG	2 cut(s)	109, 196
AccIII	TCCGGA	3 cut(s)	242, 292, 1054
AclWI	GGATC	8 cut(s)	41, 54, 98, 284, 297, 761, 1786, 1892
AcoI	YGGCCR	5 cut(s)	3, 1120, 1486, 1966, 2117
AcsI	RAATTY	3 cut(s)	436, 1825, 1848
AcuI	CTGAAG	2 cut(s)	861, 2175
AdeI	CACNNNGTG	1 cut(s)	1495
AfaI	GTAC	3 cut(s)	693, 1242, 1315
AfiI	CCNNNNNNNGG	8 cut(s)	122, 176, 1459, 1495, 1821, 1975, 2624, 2766
AflIII	ACRYGT	4 cut(s)	9, 487, 1227, 2146
AhdI	GACNNNNNGTC	2 cut(s)	1037, 2592
AjiI	CACGTC	2 cut(s)	10, 490
AjnI	CCWGG	2 cut(s)	979, 2761
AjuI	GAANNNNNNNTTGG	2 cut(s)	993, 1025
AloI	GAACNNNNNNTCC	2 cut(s)	2518, 2550
Alw21I	GWGCWC	3 cut(s)	300, 746, 2369
Alw26I	GTCTC	4 cut(s)	152, 1024, 2597, 2649
AlwI	GGATC	8 cut(s)	41, 54, 98, 284, 297, 761, 1786, 1892
AlwNI	CAGNNNCTG	1 cut(s)	385
Ama87I	CYCGRG	2 cut(s)	155, 211
Aor13HI	TCCGGA	3 cut(s)	242, 292, 1054
AoxI	GGCC	9 cut(s)	3, 72, 152, 208, 1120, 1486, 1966, 2117, 2768
ApeKI	GCWGC	4 cut(s)	52, 183, 407, 1213
ApoI	RAATTY	3 cut(s)	436, 1825, 1848
Asp700I	GAANNNNTTC	2 cut(s)	116, 1362
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	7 cut(s)	153, 209, 1013, 1750, 2255, 2594, 2768
AsuC2I	CCSGG	4 cut(s)	171, 204, 212, 213
AsuHPI	GGTGA	4 cut(s)	1728, 2396, 2671, 2749
AsuII	TTCGAA	5 cut(s)	718, 1141, 1366, 1544, 2306
AsuNHI	GCTAGC	1 cut(s)	1106
AvaI	CYCGRG	2 cut(s)	155, 211
AvaII	GGWCC	4 cut(s)	1013, 1750, 2255, 2594
BaeI	ACNNNNGTAYC	2 cut(s)	2816, 2849
BalI	TGGCCA	2 cut(s)	1488, 1968
BamHI	GGATCC	2 cut(s)	46, 289
BanI	GGYRCC	1 cut(s)	1667
BanII	GRGCYC	2 cut(s)	300, 1568
BbsI	GAAGAC	2 cut(s)	532, 1533
Bbv12I	GWGCWC	3 cut(s)	300, 746, 2369
BbvI	GCAGC	4 cut(s)	64, 195, 394, 1225
BceAI	ACGGC	2 cut(s)	64, 154
BcgI	CGANNNNNNTGC	2 cut(s)	12, 46
BciT130I	CCWGG	2 cut(s)	981, 2763
BciVI	GTATCC	1 cut(s)	2817
BclI	TGATCA	1 cut(s)	2248
BcnI	CCSGG	4 cut(s)	171, 204, 212, 213
BcoDI	GTCTC	4 cut(s)	152, 1024, 2597, 2649
BfaI	CTAG	9 cut(s)	669, 936, 1091, 1107, 1400, 1854, 1911, 1956, 2133
BfmI	CTRYAG	1 cut(s)	1434
BfuAI	ACCTGC	1 cut(s)	423
BfuI	GTATCC	1 cut(s)	2817
BglII	AGATCT	1 cut(s)	699
BisI	GCNGC	7 cut(s)	53, 184, 208, 408, 932, 1214, 1618
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	7 cut(s)	54, 185, 209, 409, 933, 1215, 1619
Bme1390I	CCNGG	6 cut(s)	171, 204, 212, 213, 981, 2763
Bme18I	GGWCC	4 cut(s)	1013, 1750, 2255, 2594
BmeRI	GACNNNNNGTC	2 cut(s)	1037, 2592
BmeT110I	CYCGRG	2 cut(s)	155, 211
BmgBI	CACGTC	2 cut(s)	10, 490
BmgT120I	GGNCC	7 cut(s)	153, 209, 1013, 1750, 2255, 2594, 2768
BmiI	GGNNCC	5 cut(s)	48, 241, 291, 1669, 1752
BmrFI	CCNGG	6 cut(s)	171, 204, 212, 213, 981, 2763
BmsI	GCATC	8 cut(s)	439, 580, 875, 1414, 1436, 1475, 1778, 2545
BmtI	GCTAGC	1 cut(s)	1110
BpiI	GAAGAC	2 cut(s)	532, 1533
BplI	GAGNNNNNCTC	4 cut(s)	59, 91, 2412, 2444
BpmI	CTGGAG	1 cut(s)	669
Bpu1102I	GCTNAGC	1 cut(s)	299
Bpu14I	TTCGAA	5 cut(s)	718, 1141, 1366, 1544, 2306
BpuEI	CTTGAG	2 cut(s)	1048, 2574
BpuMI	CCSGG	4 cut(s)	171, 204, 212, 213
BsaAI	YACGTR	2 cut(s)	1244, 2147
BsaI	GGTCTC	1 cut(s)	1024
BsaWI	WCCGGW	4 cut(s)	242, 292, 1054, 1814
BsaXI	ACNNNNNCTCC	6 cut(s)	269, 299, 313, 343, 2518, 2548
Bsc4I	CCNNNNNNNGG	8 cut(s)	122, 176, 1459, 1495, 1821, 1975, 2624, 2766
Bse1I	ACTGG	4 cut(s)	1156, 1630, 1669, 2852
Bse3DI	GCAATG	2 cut(s)	1693, 2565
BseAI	TCCGGA	3 cut(s)	242, 292, 1054
BseBI	CCWGG	2 cut(s)	981, 2763
BseLI	CCNNNNNNNGG	8 cut(s)	122, 176, 1459, 1495, 1821, 1975, 2624, 2766
BseMI	GCAATG	2 cut(s)	1693, 2565
BseMII	CTCAG	5 cut(s)	313, 387, 1811, 2259, 2654
BseNI	ACTGG	4 cut(s)	1156, 1630, 1669, 2852
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	4 cut(s)	64, 195, 394, 1225
BseYI	CCCAGC	1 cut(s)	1820
BsgI	GTGCAG	1 cut(s)	2171
Bsh1236I	CGCG	2 cut(s)	109, 196
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	9 cut(s)	5, 74, 154, 210, 1122, 1488, 1968, 2119, 2770
BshNI	GGYRCC	1 cut(s)	1667
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	3 cut(s)	300, 746, 2369
BsiHKCI	CYCGRG	2 cut(s)	155, 211
BslFI	GGGAC	2 cut(s)	1424, 1435
BslI	CCNNNNNNNGG	8 cut(s)	122, 176, 1459, 1495, 1821, 1975, 2624, 2766
BsmAI	GTCTC	4 cut(s)	152, 1024, 2597, 2649
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	2 cut(s)	1424, 1435
BsnI	GGCC	9 cut(s)	5, 74, 154, 210, 1122, 1488, 1968, 2119, 2770
Bso31I	GGTCTC	1 cut(s)	1024
BsoBI	CYCGRG	2 cut(s)	155, 211
Bsp119I	TTCGAA	5 cut(s)	718, 1141, 1366, 1544, 2306
Bsp1286I	GDGCHC	4 cut(s)	300, 746, 1568, 2369
Bsp13I	TCCGGA	3 cut(s)	242, 292, 1054
Bsp1720I	GCTNAGC	1 cut(s)	299
Bsp19I	CCATGG	1 cut(s)	2380
BspANI	GGCC	9 cut(s)	5, 74, 154, 210, 1122, 1488, 1968, 2119, 2770
BspCNI	CTCAG	5 cut(s)	312, 388, 1810, 2260, 2653
BspEI	TCCGGA	3 cut(s)	242, 292, 1054
BspFNI	CGCG	2 cut(s)	109, 196
BspLI	GGNNCC	5 cut(s)	48, 241, 291, 1669, 1752
BspMI	ACCTGC	1 cut(s)	423
BspOI	GCTAGC	1 cut(s)	1110
BspPI	GGATC	8 cut(s)	41, 54, 98, 284, 297, 761, 1786, 1892
BspQI	GCTCTTC	1 cut(s)	2491
BspT104I	TTCGAA	5 cut(s)	718, 1141, 1366, 1544, 2306
BspT107I	GGYRCC	1 cut(s)	1667
BspTNI	GGTCTC	1 cut(s)	1024
BsrBI	CCGCTC	1 cut(s)	177
BsrDI	GCAATG	2 cut(s)	1693, 2565
BsrI	ACTGG	4 cut(s)	1156, 1630, 1669, 2852
BssT1I	CCWWGG	7 cut(s)	798, 1265, 1442, 2289, 2380, 2618, 2819
Bst2UI	CCWGG	2 cut(s)	981, 2763
Bst4CI	ACNGT	7 cut(s)	849, 1207, 1318, 1744, 1975, 2210, 2446
Bst6I	CTCTTC	5 cut(s)	248, 677, 1411, 2303, 2491
BstBAI	YACGTR	2 cut(s)	1244, 2147
BstBI	TTCGAA	5 cut(s)	718, 1141, 1366, 1544, 2306
BstC8I	GCNNGC	7 cut(s)	428, 1108, 1384, 2057, 2108, 2451, 2748
BstDEI	CTNAG	8 cut(s)	299, 396, 513, 775, 1773, 1797, 2268, 2640
BstDSI	CCRYGG	1 cut(s)	2380
BstFNI	CGCG	2 cut(s)	109, 196
BstHHI	GCGC	1 cut(s)	109
BstMAI	GTCTC	4 cut(s)	152, 1024, 2597, 2649
BstMCI	CGRYCG	1 cut(s)	32
BstNI	CCWGG	2 cut(s)	981, 2763
BstNSI	RCATGY	2 cut(s)	1231, 2110
BstSCI	CCNGG	6 cut(s)	169, 202, 210, 211, 979, 2761
BstSFI	CTRYAG	1 cut(s)	1434
BstUI	CGCG	2 cut(s)	109, 196
BstV1I	GCAGC	4 cut(s)	64, 195, 394, 1225
BstV2I	GAAGAC	2 cut(s)	532, 1533
BstX2I	RGATCY	5 cut(s)	46, 289, 699, 766, 1791
BstYI	RGATCY	5 cut(s)	46, 289, 699, 766, 1791
BsuI	GTATCC	1 cut(s)	2817
BsuRI	GGCC	9 cut(s)	5, 74, 154, 210, 1122, 1488, 1968, 2119, 2770
BtgI	CCRYGG	1 cut(s)	2380
BtrI	CACGTC	2 cut(s)	10, 490
BtsI	GCAGTG	3 cut(s)	148, 386, 746
BtsIMutI	CAGTG	9 cut(s)	148, 378, 386, 746, 881, 1048, 1980, 2369, 2451
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	7 cut(s)	428, 1108, 1384, 2057, 2108, 2451, 2748
CaiI	CAGNNNCTG	1 cut(s)	385
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	7 cut(s)	153, 209, 1013, 1750, 2255, 2594, 2768
Cfr9I	CCCGGG	1 cut(s)	211
CseI	GACGC	2 cut(s)	169, 1539
Csp6I	GTAC	3 cut(s)	692, 1241, 1314
CspCI	CAANNNNNGTGG	2 cut(s)	1632, 1667
CviAII	CATG	9 cut(s)	596, 604, 625, 1228, 1808, 2107, 2381, 2648, 2666
CviQI	GTAC	3 cut(s)	692, 1241, 1314
DdeI	CTNAG	8 cut(s)	299, 396, 513, 775, 1773, 1797, 2268, 2640
DraI	TTTAAA	1 cut(s)	957
DraIII	CACNNNGTG	1 cut(s)	1495
DriI	GACNNNNNGTC	2 cut(s)	1037, 2592
EaeI	YGGCCR	5 cut(s)	3, 1120, 1486, 1966, 2117
Eam1104I	CTCTTC	5 cut(s)	248, 677, 1411, 2303, 2491
Eam1105I	GACNNNNNGTC	2 cut(s)	1037, 2592
EarI	CTCTTC	5 cut(s)	248, 677, 1411, 2303, 2491
EciI	GGCGGA	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	7 cut(s)	798, 1265, 1442, 2289, 2380, 2618, 2819
Eco147I	AGGCCT	1 cut(s)	74
Eco24I	GRGCYC	2 cut(s)	300, 1568
Eco31I	GGTCTC	1 cut(s)	1024
Eco32I	GATATC	1 cut(s)	1734
Eco47I	GGWCC	4 cut(s)	1013, 1750, 2255, 2594
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	2 cut(s)	861, 2175
Eco88I	CYCGRG	2 cut(s)	155, 211
EcoICRI	GAGCTC	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	1750
EcoRI	GAATTC	2 cut(s)	436, 1848
EcoRII	CCWGG	2 cut(s)	979, 2761
EcoRV	GATATC	1 cut(s)	1734
EcoT14I	CCWWGG	7 cut(s)	798, 1265, 1442, 2289, 2380, 2618, 2819
EcoT22I	ATGCAT	3 cut(s)	630, 1429, 2112
EcoT38I	GRGCYC	2 cut(s)	300, 1568
ErhI	CCWWGG	7 cut(s)	798, 1265, 1442, 2289, 2380, 2618, 2819
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	9 cut(s)	599, 607, 628, 1231, 1811, 2110, 2384, 2651, 2669
FalI	AAGNNNNNCTT	2 cut(s)	2204, 2236
FaqI	GGGAC	2 cut(s)	1424, 1435
FatI	CATG	9 cut(s)	595, 603, 624, 1227, 1807, 2106, 2380, 2647, 2665
FauI	CCCGC	1 cut(s)	1375
FauNDI	CATATG	2 cut(s)	973, 1157
FbaI	TGATCA	1 cut(s)	2248
Fnu4HI	GCNGC	7 cut(s)	53, 184, 208, 408, 932, 1214, 1618
FriOI	GRGCYC	2 cut(s)	300, 1568
Fsp4HI	GCNGC	7 cut(s)	53, 184, 208, 408, 932, 1214, 1618
FspBI	CTAG	9 cut(s)	669, 936, 1091, 1107, 1400, 1854, 1911, 1956, 2133
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	7 cut(s)	53, 184, 208, 408, 932, 1214, 1618
GsaI	CCCAGC	1 cut(s)	1824
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	9 cut(s)	5, 74, 154, 210, 1122, 1488, 1968, 2119, 2770
HgaI	GACGC	2 cut(s)	169, 1539
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	9 cut(s)	599, 607, 628, 1231, 1811, 2110, 2384, 2651, 2669
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HphI	GGTGA	4 cut(s)	1728, 2396, 2671, 2749
Hpy166II	GTNNAC	6 cut(s)	200, 610, 641, 694, 829, 2180
Hpy8I	GTNNAC	6 cut(s)	200, 610, 641, 694, 829, 2180
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	8 cut(s)	725, 1052, 1453, 1513, 1741, 1945, 2569, 2731
HpyCH4III	ACNGT	7 cut(s)	849, 1207, 1318, 1744, 1975, 2210, 2446
HpyCH4IV	ACGT	6 cut(s)	9, 489, 1019, 1243, 1945, 2146
HpyF3I	CTNAG	8 cut(s)	299, 396, 513, 775, 1773, 1797, 2268, 2640
HpySE526I	ACGT	6 cut(s)	9, 489, 1019, 1243, 1945, 2146
Hsp92II	CATG	9 cut(s)	599, 607, 628, 1231, 1811, 2110, 2384, 2651, 2669
HspAI	GCGC	1 cut(s)	107
Kpn2I	TCCGGA	3 cut(s)	242, 292, 1054
Ksp22I	TGATCA	1 cut(s)	2248
LguI	GCTCTTC	1 cut(s)	2491
LmnI	GCTCC	6 cut(s)	174, 245, 295, 749, 1046, 2050
Lsp1109I	GCAGC	4 cut(s)	64, 195, 394, 1225
LweI	GCATC	8 cut(s)	439, 580, 875, 1414, 1436, 1475, 1778, 2545
MaeI	CTAG	9 cut(s)	669, 936, 1091, 1107, 1400, 1854, 1911, 1956, 2133
MaeII	ACGT	6 cut(s)	9, 489, 1019, 1243, 1945, 2146
MaeIII	GTNAC	4 cut(s)	143, 257, 2017, 2494
MbiI	CCGCTC	1 cut(s)	177
MfeI	CAATTG	3 cut(s)	2542, 2607, 2807
MflI	RGATCY	5 cut(s)	46, 289, 699, 766, 1791
MhlI	GDGCHC	4 cut(s)	300, 746, 1568, 2369
MlsI	TGGCCA	2 cut(s)	1488, 1968
MluNI	TGGCCA	2 cut(s)	1488, 1968
MlyI	GAGTC	2 cut(s)	2525, 2581
MmeI	TCCRAC	3 cut(s)	246, 831, 1002
Mox20I	TGGCCA	2 cut(s)	1488, 1968
Mph1103I	ATGCAT	3 cut(s)	630, 1429, 2112
MroI	TCCGGA	3 cut(s)	242, 292, 1054
MroXI	GAANNNNTTC	2 cut(s)	116, 1362
MscI	TGGCCA	2 cut(s)	1488, 1968
MseI	TTAA	9 cut(s)	129, 165, 782, 956, 993, 1473, 1763, 1862, 2403
Msp20I	TGGCCA	2 cut(s)	1488, 1968
MspA1I	CMGCKG	1 cut(s)	2600
MspR9I	CCNGG	6 cut(s)	171, 204, 212, 213, 981, 2763
MunI	CAATTG	3 cut(s)	2542, 2607, 2807
MvaI	CCWGG	2 cut(s)	981, 2763
MvnI	CGCG	2 cut(s)	109, 196
NciI	CCSGG	4 cut(s)	171, 204, 212, 213
NcoI	CCATGG	1 cut(s)	2380
NdeI	CATATG	2 cut(s)	973, 1157
NheI	GCTAGC	1 cut(s)	1106
NlaIII	CATG	9 cut(s)	599, 607, 628, 1231, 1811, 2110, 2384, 2651, 2669
NlaIV	GGNNCC	5 cut(s)	48, 241, 291, 1669, 1752
NmuCI	GTSAC	3 cut(s)	143, 257, 2017
NsiI	ATGCAT	3 cut(s)	630, 1429, 2112
NspI	RCATGY	2 cut(s)	1231, 2110
NspV	TTCGAA	5 cut(s)	718, 1141, 1366, 1544, 2306
PaeI	GCATGC	1 cut(s)	2110
PceI	AGGCCT	1 cut(s)	74
PciI	ACATGT	1 cut(s)	1227
PciSI	GCTCTTC	1 cut(s)	2491
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PdmI	GAANNNNTTC	2 cut(s)	116, 1362
PflMI	CCANNNNNTGG	2 cut(s)	1495, 1975
PkrI	GCNGC	7 cut(s)	54, 185, 209, 409, 933, 1215, 1619
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	2 cut(s)	2524, 2581
PpsI	GAGTC	2 cut(s)	2524, 2581
Ppu21I	YACGTR	2 cut(s)	1244, 2147
PpuMI	RGGWCCY	1 cut(s)	1750
PscI	ACATGT	1 cut(s)	1227
Psp124BI	GAGCTC	1 cut(s)	300
Psp5II	RGGWCCY	1 cut(s)	1750
Psp6I	CCWGG	2 cut(s)	979, 2761
PspFI	CCCAGC	1 cut(s)	1820
PspGI	CCWGG	2 cut(s)	979, 2761
PspN4I	GGNNCC	5 cut(s)	48, 241, 291, 1669, 1752
PspPI	GGNCC	7 cut(s)	153, 209, 1013, 1750, 2255, 2594, 2768
PspPPI	RGGWCCY	1 cut(s)	1750
PsrI	GAACNNNNNNTAC	2 cut(s)	1176, 1208
PstNI	CAGNNNCTG	1 cut(s)	385
PsuI	RGATCY	5 cut(s)	46, 289, 699, 766, 1791
PvuI	CGATCG	1 cut(s)	32
RsaI	GTAC	3 cut(s)	693, 1242, 1315
RsaNI	GTAC	3 cut(s)	692, 1241, 1314
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	2491
SaqAI	TTAA	9 cut(s)	129, 165, 782, 956, 993, 1473, 1763, 1862, 2403
SatI	GCNGC	7 cut(s)	53, 184, 208, 408, 932, 1214, 1618
Sau96I	GGNCC	7 cut(s)	153, 209, 1013, 1750, 2255, 2594, 2768
SchI	GAGTC	2 cut(s)	2525, 2581
ScrFI	CCNGG	6 cut(s)	171, 204, 212, 213, 981, 2763
SduI	GDGCHC	4 cut(s)	300, 746, 1568, 2369
SfaNI	GCATC	8 cut(s)	439, 580, 875, 1414, 1436, 1475, 1778, 2545
SfcI	CTRYAG	1 cut(s)	1434
SfuI	TTCGAA	5 cut(s)	718, 1141, 1366, 1544, 2306
SinI	GGWCC	4 cut(s)	1013, 1750, 2255, 2594
SmaI	CCCGGG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	1027, 2589
SmoI	CTYRAG	2 cut(s)	1027, 2589
SphI	GCATGC	1 cut(s)	2110
SseBI	AGGCCT	1 cut(s)	74
SspMI	CTAG	9 cut(s)	669, 936, 1091, 1107, 1400, 1854, 1911, 1956, 2133
SstI	GAGCTC	1 cut(s)	300
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	6 cut(s)	169, 202, 210, 211, 979, 2761
StyI	CCWWGG	7 cut(s)	798, 1265, 1442, 2289, 2380, 2618, 2819
TaaI	ACNGT	7 cut(s)	849, 1207, 1318, 1744, 1975, 2210, 2446
TaiI	ACGT	6 cut(s)	12, 492, 1022, 1246, 1948, 2149
TauI	GCSGC	3 cut(s)	210, 934, 1620
Tru1I	TTAA	9 cut(s)	129, 165, 782, 956, 993, 1473, 1763, 1862, 2403
Tru9I	TTAA	9 cut(s)	129, 165, 782, 956, 993, 1473, 1763, 1862, 2403
TscAI	CASTG	9 cut(s)	148, 378, 386, 746, 881, 1048, 1980, 2376, 2451
TseFI	GTSAC	3 cut(s)	143, 257, 2017
TseI	GCWGC	4 cut(s)	52, 183, 407, 1213
Tsp45I	GTSAC	3 cut(s)	143, 257, 2017
TspDTI	ATGAA	9 cut(s)	89, 612, 923, 1085, 1830, 1956, 2232, 2358, 2724
TspGWI	ACGGA	2 cut(s)	577, 2354
TspMI	CCCGGG	1 cut(s)	211
TspRI	CASTG	9 cut(s)	148, 378, 386, 746, 881, 1048, 1980, 2376, 2451
Van91I	CCANNNNNTGG	2 cut(s)	1495, 1975
VpaK11BI	GGWCC	4 cut(s)	1013, 1750, 2255, 2594
XapI	RAATTY	3 cut(s)	436, 1825, 1848
XbaI	TCTAGA	1 cut(s)	1910
XceI	RCATGY	2 cut(s)	1231, 2110
XmaI	CCCGGG	1 cut(s)	211
XmnI	GAANNNNTTC	2 cut(s)	116, 1362
XspI	CTAG	9 cut(s)	669, 936, 1091, 1107, 1400, 1854, 1911, 1956, 2133
Zsp2I	ATGCAT	3 cut(s)	630, 1429, 2112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.