Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009301

Physical Location & Seq

Genomic Coordinates Forward (+)

55567317 .. 55571309

Gene Structure 3993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0462900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGGCTGCTATTGTTCAAAGCCAGAAAAAACTCCGGGCTATGAGAACCCTACAGTTCTTGCTGCTGAAACACCTTTTACAGTAAGTGAAGTAGAAGCCTTGTATGAGCTTTTTAAGAAATTGAGCAGTTCTATATATGATGATGGGCTTATCCACAAGGAAGAATTTCAACTAGCGCTCTTCAGGAACCAGAATAAGAGGAATCTTTTTGCAGACAGGATTTTCGACTTATTTGATATCAAGCGCAATGGGGTTATTGAGTTTGGAGAATTTGTTCGATCATTGGGTGTCTTTCACCCCAATGCACCTGTAGAAGACAAAATTGCATTTGCGTTTAGACTGTATGATCTGAGACAAACAGGGTTCATTGAACGAGAGGAGTTGAAGGAGATGGTGCTGGCACTTTTTCATGAATCAGATCTGTTACTTTCAAATGATGTCGTTGAAGCCATTGTGGATAAGACGTTTAAAGATGCAGATAAGAAAGGTGATGGAAGGATTGATCAGCAAGAGTGGAAGGAATTTGTTTTGAAGCATCCAACTTTGATCCTAAAGAATATGACTCTACCGTATCTAAAGGACATAACACTAGCTTTCCCTAGCTTTGTAATGAGTTCTGAAGTTGAAGATTCAGATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

213

Amino Acids

24.59

Weight (kDa)

4.85

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	105 - 175	1.6e-11	EF-hand domain pair
EF-hand_1	PF00036	152 - 176	1e-05	EF hand domain
EF-hand_5	PF13202	152 - 176	2.1e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57990
fragaria_vesca	FvH4_1g01010 FvH4_1g01010 FvH4_1g01010
malus_domestica	MD02G1008300.v1.1 MD15G1152500.v1.1
prunus_persica	Prupe.7G262200_v2.0.a1
pyrus_communis	pycom02g00720 pycom15g13710
rosa_chinensis	RchiOBHm_Chr2g0085751
rosa_laevigata	RLG00000015716
rosa_multiflora	Rmu_sc0009759.1_g000004 Rmu_sc0023131.1_g000003 Rmu_sc0033740.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155070
rosa_rugosa	Rorug01G0462900 Rorug01G0462900
rosa_samantha	Rh2AG012000 Rh2BG012600 Rh2CG013400 Rh2DG014400
rosa_wichuraiana	Rw2G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	541
AcsI	RAATTY	3 cut(s)	164, 269, 521
AcuI	CTGAAG	2 cut(s)	166, 639
AfeI	AGCGCT	1 cut(s)	177
AgsI	TTSAA	8 cut(s)	18, 170, 371, 385, 432, 446, 532, 626
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	3 cut(s)	109, 593, 603
AluI	AGCT	3 cut(s)	109, 593, 603
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	541
Aor51HI	AGCGCT	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	6, 62
ApoI	RAATTY	3 cut(s)	164, 269, 521
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
Asp700I	GAANNNNTTC	2 cut(s)	165, 273
AspLEI	GCGC	2 cut(s)	178, 246
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	287, 500
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	3 cut(s)	137, 385, 485
BclI	TGATCA	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	3 cut(s)	173, 590, 600
BfmI	CTRYAG	2 cut(s)	51, 309
BfoI	RGCGCY	1 cut(s)	179
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	2 cut(s)	7, 63
BlsI	GCNGC	2 cut(s)	8, 64
Bme1390I	CCNGG	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	2 cut(s)	463, 544
BpiI	GAAGAC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bse3DI	GCAATG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	535
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	346
Bsp143I	GATC	5 cut(s)	278, 346, 418, 502, 546
BspCNI	CTCAG	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	541
BspQI	GCTCTTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	253
BssMI	GATC	5 cut(s)	278, 346, 418, 502, 546
Bst4CI	ACNGT	4 cut(s)	55, 82, 342, 570
Bst6I	CTCTTC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	535
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	2 cut(s)	178, 246
BstKTI	GATC	5 cut(s)	281, 349, 421, 505, 549
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	5 cut(s)	278, 346, 418, 502, 546
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	2 cut(s)	51, 309
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	399
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	2 cut(s)	178, 246
CviAII	CATG	1 cut(s)	410
CviJI	RGCY	9 cut(s)	6, 22, 39, 98, 109, 148, 449, 593, 603
CviKI_1	RGCY	9 cut(s)	6, 22, 39, 98, 109, 148, 449, 593, 603
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	5 cut(s)	280, 348, 420, 504, 548
DpnII	GATC	5 cut(s)	278, 346, 418, 502, 546
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	238
Eco47III	AGCGCT	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	166, 639
EcoRV	GATATC	1 cut(s)	238
FaeI	CATG	1 cut(s)	413
FatI	CATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	2 cut(s)	7, 63
FokI	GGATG	1 cut(s)	522
Fsp4HI	GCNGC	2 cut(s)	7, 63
FspBI	CTAG	3 cut(s)	173, 590, 600
GlaI	GCGC	2 cut(s)	177, 245
GluI	GCNGC	2 cut(s)	7, 63
HaeII	RGCGCY	1 cut(s)	179
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	2 cut(s)	178, 246
Hin1II	CATG	1 cut(s)	413
Hin6I	GCGC	2 cut(s)	176, 244
HinP1I	GCGC	2 cut(s)	176, 244
HinfI	GANTC	4 cut(s)	202, 413, 562, 629
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	2 cut(s)	287, 500
Hpy188I	TCNGA	4 cut(s)	351, 418, 619, 634
Hpy188III	TCNNGA	2 cut(s)	184, 410
HpyAV	CCTTC	3 cut(s)	379, 489, 511
HpyCH4III	ACNGT	4 cut(s)	55, 82, 342, 570
HpyCH4IV	ACGT	1 cut(s)	464
HpyCH4V	TGCA	4 cut(s)	212, 305, 326, 476
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	413
HspAI	GCGC	2 cut(s)	176, 244
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	5 cut(s)	278, 346, 418, 502, 546
LguI	GCTCTTC	1 cut(s)	185
LpnPI	CCDG	8 cut(s)	36, 48, 169, 202, 203, 321, 345, 383
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	463, 544
MaeI	CTAG	3 cut(s)	173, 590, 600
MaeII	ACGT	1 cut(s)	464
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	5 cut(s)	280, 348, 420, 504, 548
MboI	GATC	5 cut(s)	278, 346, 418, 502, 546
MboII	GAAGA	4 cut(s)	172, 173, 326, 638
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	5 cut(s)	119, 164, 269, 321, 521
MlyI	GAGTC	1 cut(s)	556
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	2 cut(s)	192, 370
MroXI	GAANNNNTTC	2 cut(s)	165, 273
MseI	TTAA	2 cut(s)	114, 468
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	36
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	5 cut(s)	278, 346, 418, 502, 546
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	1 cut(s)	188
PagI	TCATGA	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	185
PdmI	GAANNNNTTC	2 cut(s)	165, 273
PfeI	GAWTC	3 cut(s)	202, 413, 629
PkrI	GCNGC	2 cut(s)	8, 64
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	114, 468
SatI	GCNGC	2 cut(s)	7, 63
Sau3AI	GATC	5 cut(s)	278, 346, 418, 502, 546
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	7 cut(s)	76, 111, 310, 467, 490, 595, 605
SfaNI	GCATC	2 cut(s)	463, 544
SfcI	CTRYAG	2 cut(s)	51, 309
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	5 cut(s)	119, 164, 269, 321, 521
SspMI	CTAG	3 cut(s)	173, 590, 600
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	4 cut(s)	55, 82, 342, 570
TaiI	ACGT	1 cut(s)	467
TaqI	TCGA	2 cut(s)	225, 277
TasI	AATT	5 cut(s)	119, 164, 269, 321, 521
TfiI	GAWTC	3 cut(s)	202, 413, 629
Tru1I	TTAA	2 cut(s)	114, 468
Tru9I	TTAA	2 cut(s)	114, 468
TseI	GCWGC	2 cut(s)	6, 62
TspDTI	ATGAA	3 cut(s)	355, 398, 426
XapI	RAATTY	3 cut(s)	164, 269, 521
XmnI	GAANNNNTTC	2 cut(s)	165, 273
XspI	CTAG	3 cut(s)	173, 590, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.