Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009301

Physical Location & Seq

Genomic Coordinates Reverse (-)

1048385 .. 1054098

Gene Structure 5714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG013400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2589 bp

ATGAATAATGCAATGATTGAGAGGAAGAATGGTTTGAAACTTTTTCAGGGTGCTGGTTTGATAAATATGGGGAATACTTGTTATCTCAATTCAGTGTTGCAGTGCCTGACATATACTGAGCCTTTAGCTGCATACCTGCAAAGTGGCAGGCATCGGAATTCTTGTCATATAAAAAATGGGTTTTGTGCTTTATGTGCCATCCAAGAGCACGTCAGTCTTGCTCTACAATCAACCAAGAGCATTTTGCCAAAGGCTCTTGTCTTCAATCTACAACGCATATCGCGGAACTTTAGGAAGTCCAGACAGGAAGATGCACATGAATACATGGTAAACTTGCTGGAATCCATGCATAAATGTTGTTTACCATCTGGAGTGCCAAGTGAATCCCCTAGTGCCTATGAGAAGAGTTTGGTACACAAGATCTTTGGTGGTCGCCTTCGAAGTCGGGTCAAATGTTTGCAGTGCTCCTATTGCTCTGACAAGTTAGATCCATTCTTAGATTTAAGTCTTGAAATAGCCAAGGCAAACTCTTTGAATAAAGCACTTGTGAACTTTACTGCTGAAGAACAGTTGGATGGTGGGGAAAGGCAATATCAGTGCCAAAGATGCAATCAGAAAGTTCGAGCTATGAAACAGATGACCATTCACAAGCCGCCTAGTGTTCTGTCCATCCATTTAAAGCGGTTTCGTGCATATGACCCTGGACAAAAAATTAACAAAGAAGTTCAGTTTGGTCCTACGTTGGACTTGAGACCTTTTGTCAGTGGAGCATATCCGGAAGGAGATTTGAAATATACTCTTTATGGGGTTCTAGTTCATTGTGGGGCTAGCACCTATTCCGGCCATTATTATTGCTTTGTTCGAACATCAACTGGCATTTGGCACTCTCTGGATGACAACAATGTAAGGCAAGTTCGTGAGATGACTGTTTTGCAGCAAAAGGCGTACATGTTGTTCTATGTACGTGATAGAAGAAATATTATTCCAAGGAAGCCTGTTGATGTTGCTCAAAAGGAGTATTTCAAACCTAATGGTACTGTAAATAAAATTACTCCTACTGACAACCATTTGTCGAAAGAACCTATTCGAAAAATTGCAGTTGCGGGCAGATCCAATGATCTAGCCTCTTCTGTTGCACAAAAAGATGCATCAGCTATTGTCCCAAGGGTGTCCCATTTGAAGGAAGCATCAGTTAATCAAAATAATGGCCACCTAGTGGCACAAAATATGGTGCGTAAGAAGGAAGCCATTTCAGAATCGTCTTTGATAGCGTCATTATCAGAGGGCTCATTGGGAGGATTAGGAGAAAATATGCCACCATCTACTCTGCTTCCAAGCCGCAAAACTGGCACTTCTGATTCTGCAAGTGCTGTGGCTTCAACAACTGGTGCCAAACTAAATGACTGCAATGAGAAAGCAAGTTCAAATGATAATGAAAGGGTTTCAATTATGATATCACCTACTGTGAAGGACCCTGAAATCTTGAAGGCATCGAAGCCTGTTCAAGATGAGATCCCTCAGAATAAAAATCATGCTTCCGGTGCTGGGAATTTGAGTGTGGCTTCATCCAGAATTCCAAATGGTTTGACATTGGAGAAGCTGAATCCTGAAAAGCCATCTGATCCACCAAGCTCTAGAATCAGTCAGGCTGGAAGTTTTACCAATGAACGTGAGAAGGCTAGTGATTGTGGCCAGACAGTGGTAGTTTCTGATTCTGCAAAATTGTCTGGCTCATCAGTTGTGACAAATAGATCATTAGATTTGGAAGCTCCTGACCGCAAGCACCCTAAAGGATTGAAAAAGAAGCACATAAAGTGTAAGGTGGTAGGCATGCATTTCCGGCCATCCTTGCTTTCTAGGGCAGTCTTAAGGGTGCAGAAGAAGAAGAAGCACAAAAGGAGTAAACACCTAACTTCAGATTTTAAGAGCCATAGTAAGAAATACTTGGTAGAAAATTATTGTTCTTCATCTGATCAAGGACCATCTACATCTGAGAAAACCCAGACAGATTCCTTGGTTTCTGTCTGTTCGAAGAGAAAGAGAAACAAATCTGGCTTGAAAACAGATGAAGATGGAACTTCTAATAAGTGCTCAGAGAATCCCCATGGTGATTCTTCGATGGATATTAAAGATGTAGAGTTTAGAGAGAGCCTCATTCAGAATGGAACAGTGCTTGCAAGTGATAAACAACAACAAAATGGTTTTGGCTCTTCCTCTGTTACATTGGAAAACAAAAGGGTGTCGAGAGGAACTGATACTCCACACAATTGTAAAAGTGATGCAATGCAAAATGGATGGAAGGGTGTGCTGACTCAGGGTCCAGTGGAGACAATTGTTGCACCTTGGGATGGAATAGAATTGCCTCAGTCTCATGTTGTAGAATCAAGCCATGCACAGAGTATCACCATCGGTTATGTAGGAGATGATTGGGATGAAGAATATGATCGGGGAAAGAGAAAGAAGGTAAGGCAAGCAAAACTCACCCCTGGTGGGCCAAATCCTTTCCAAATACTTGCAAACAAGAAAGCACAATTGAAGCAACCAAGGATACAAAGGTTTGATTCTGGAAATCGACCAGTCAGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

862

Amino Acids

95.3

Weight (kDa)

9.51

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	18 - 320	9.6e-62	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	18 - 301	7.3e-16	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57990
fragaria_vesca	FvH4_1g01010 FvH4_1g01010 FvH4_1g01010
malus_domestica	MD02G1008300.v1.1 MD15G1152500.v1.1
prunus_persica	Prupe.7G262200_v2.0.a1
pyrus_communis	pycom02g00720 pycom15g13710
rosa_chinensis	RchiOBHm_Chr2g0085751
rosa_laevigata	RLG00000015716
rosa_multiflora	Rmu_sc0009759.1_g000004 Rmu_sc0023131.1_g000003 Rmu_sc0033740.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155070
rosa_rugosa	Rorug01G0462900 Rorug01G0462900
rosa_samantha	Rh2AG012000 Rh2BG012600 Rh2CG013400 Rh2DG014400
rosa_wichuraiana	Rw2G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	1388
AccB7I	CCANNNNNTGG	2 cut(s)	1216, 1699
AccII	CGCG	1 cut(s)	283
AccIII	TCCGGA	1 cut(s)	775
AciI	CCGC	6 cut(s)	283, 653, 682, 1103, 1339, 1777
AclWI	GGATC	4 cut(s)	482, 1104, 1507, 1616
AcoI	YGGCCR	4 cut(s)	841, 1207, 1690, 1841
AcsI	RAATTY	3 cut(s)	157, 1549, 1572
AcuI	CTGAAG	2 cut(s)	582, 1899
AdeI	CACNNNGTG	1 cut(s)	1216
AfaI	GTAC	4 cut(s)	414, 947, 963, 1036
AfiI	CCNNNNNNNGG	6 cut(s)	1180, 1216, 1545, 1699, 2348, 2490
AflII	CTTAAG	1 cut(s)	1867
AflIII	ACRYGT	1 cut(s)	948
AhdI	GACNNNNNGTC	2 cut(s)	758, 2316
AjiI	CACGTC	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	700, 2485
AjuI	GAANNNNNNNTTGG	2 cut(s)	714, 746
AloI	GAACNNNNNNTCC	2 cut(s)	2242, 2274
AluBI	AGCT	6 cut(s)	128, 626, 1154, 1600, 1632, 1769
AluI	AGCT	6 cut(s)	128, 626, 1154, 1600, 1632, 1769
Alw21I	GWGCWC	3 cut(s)	210, 467, 2093
Alw26I	GTCTC	3 cut(s)	745, 2321, 2373
AlwI	GGATC	4 cut(s)	482, 1104, 1507, 1616
AlwNI	CAGNNNCTG	1 cut(s)	106
Aor13HI	TCCGGA	1 cut(s)	775
AoxI	GGCC	5 cut(s)	841, 1207, 1690, 1841, 2492
ApeKI	GCWGC	2 cut(s)	128, 934
ApoI	RAATTY	3 cut(s)	157, 1549, 1572
Asp700I	GAANNNNTTC	1 cut(s)	1083
AspS9I	GGNCC	5 cut(s)	734, 1471, 1979, 2318, 2492
AsuHPI	GGTGA	4 cut(s)	1449, 2120, 2395, 2473
AsuII	TTCGAA	4 cut(s)	439, 862, 1087, 2030
AsuNHI	GCTAGC	1 cut(s)	827
AvaII	GGWCC	4 cut(s)	734, 1471, 1979, 2318
BaeI	ACNNNNGTAYC	2 cut(s)	2540, 2573
BalI	TGGCCA	2 cut(s)	1209, 1692
BanI	GGYRCC	1 cut(s)	1388
BanII	GRGCYC	1 cut(s)	1289
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	3 cut(s)	210, 467, 2093
BbvI	GCAGC	2 cut(s)	115, 946
BciT130I	CCWGG	2 cut(s)	702, 2487
BciVI	GTATCC	1 cut(s)	2541
BclI	TGATCA	1 cut(s)	1972
BcoDI	GTCTC	3 cut(s)	745, 2321, 2373
BfaI	CTAG	9 cut(s)	390, 657, 812, 828, 1121, 1214, 1635, 1680, 1857
BfrI	CTTAAG	1 cut(s)	1867
BfuAI	ACCTGC	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	2541
BglII	AGATCT	1 cut(s)	420
BisI	GCNGC	4 cut(s)	129, 653, 935, 1339
BlsI	GCNGC	4 cut(s)	130, 654, 936, 1340
Bme1390I	CCNGG	2 cut(s)	702, 2487
Bme18I	GGWCC	4 cut(s)	734, 1471, 1979, 2318
BmeRI	GACNNNNNGTC	2 cut(s)	758, 2316
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	5 cut(s)	734, 1471, 1979, 2318, 2492
BmiI	GGNNCC	3 cut(s)	1390, 1473, 2319
BmrFI	CCNGG	2 cut(s)	702, 2487
BmsI	GCATC	8 cut(s)	160, 301, 596, 1135, 1157, 1196, 1499, 2269
BmtI	GCTAGC	1 cut(s)	831
BpiI	GAAGAC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	2136, 2168
BpmI	CTGGAG	1 cut(s)	390
Bpu14I	TTCGAA	4 cut(s)	439, 862, 1087, 2030
BpuEI	CTTGAG	1 cut(s)	769
BsaAI	YACGTR	1 cut(s)	965
BsaI	GGTCTC	1 cut(s)	745
BsaJI	CCNNGG	9 cut(s)	519, 700, 986, 1163, 2013, 2104, 2342, 2485, 2543
BsaWI	WCCGGW	2 cut(s)	775, 1538
BsaXI	ACNNNNNCTCC	2 cut(s)	2242, 2272
Bsc4I	CCNNNNNNNGG	6 cut(s)	1180, 1216, 1545, 1699, 2348, 2490
Bse1I	ACTGG	5 cut(s)	877, 1351, 1390, 2321, 2576
Bse3DI	GCAATG	3 cut(s)	18, 1414, 2289
BseAI	TCCGGA	1 cut(s)	775
BseBI	CCWGG	2 cut(s)	702, 2487
BseDI	CCNNGG	9 cut(s)	519, 700, 986, 1163, 2013, 2104, 2342, 2485, 2543
BseGI	GGATG	9 cut(s)	198, 580, 669, 898, 1565, 1844, 2300, 2353, 2437
BseLI	CCNNNNNNNGG	6 cut(s)	1180, 1216, 1545, 1699, 2348, 2490
BseMI	GCAATG	3 cut(s)	18, 1414, 2289
BseMII	CTCAG	6 cut(s)	108, 1532, 1983, 2106, 2327, 2378
BseNI	ACTGG	5 cut(s)	877, 1351, 1390, 2321, 2576
BseXI	GCAGC	2 cut(s)	115, 946
BseYI	CCCAGC	1 cut(s)	1544
BsgI	GTGCAG	1 cut(s)	1895
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	5 cut(s)	843, 1209, 1692, 1843, 2494
BshNI	GGYRCC	1 cut(s)	1388
BsiHKAI	GWGCWC	3 cut(s)	210, 467, 2093
BsiSI	CCGG	4 cut(s)	776, 840, 1539, 1840
BslFI	GGGAC	2 cut(s)	1145, 1156
BslI	CCNNNNNNNGG	6 cut(s)	1180, 1216, 1545, 1699, 2348, 2490
BsmAI	GTCTC	3 cut(s)	745, 2321, 2373
BsmFI	GGGAC	2 cut(s)	1145, 1156
BsnI	GGCC	5 cut(s)	843, 1209, 1692, 1843, 2494
Bso31I	GGTCTC	1 cut(s)	745
Bsp119I	TTCGAA	4 cut(s)	439, 862, 1087, 2030
Bsp1286I	GDGCHC	4 cut(s)	210, 467, 1289, 2093
Bsp13I	TCCGGA	1 cut(s)	775
Bsp143I	GATC	9 cut(s)	420, 487, 1109, 1117, 1512, 1621, 1751, 1972, 2443
Bsp19I	CCATGG	1 cut(s)	2104
BspACI	CCGC	6 cut(s)	283, 653, 682, 1103, 1339, 1777
BspANI	GGCC	5 cut(s)	843, 1209, 1692, 1843, 2494
BspCNI	CTCAG	6 cut(s)	109, 1531, 1984, 2105, 2326, 2377
BspEI	TCCGGA	1 cut(s)	775
BspFNI	CGCG	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	1390, 1473, 2319
BspMI	ACCTGC	1 cut(s)	144
BspOI	GCTAGC	1 cut(s)	831
BspPI	GGATC	4 cut(s)	482, 1104, 1507, 1616
BspQI	GCTCTTC	1 cut(s)	2215
BspT104I	TTCGAA	4 cut(s)	439, 862, 1087, 2030
BspT107I	GGYRCC	1 cut(s)	1388
BspTI	CTTAAG	1 cut(s)	1867
BspTNI	GGTCTC	1 cut(s)	745
BsrDI	GCAATG	3 cut(s)	18, 1414, 2289
BsrI	ACTGG	5 cut(s)	877, 1351, 1390, 2321, 2576
BssECI	CCNNGG	9 cut(s)	519, 700, 986, 1163, 2013, 2104, 2342, 2485, 2543
BssMI	GATC	9 cut(s)	420, 487, 1109, 1117, 1512, 1621, 1751, 1972, 2443
BssT1I	CCWWGG	7 cut(s)	519, 986, 1163, 2013, 2104, 2342, 2543
Bst2UI	CCWGG	2 cut(s)	702, 2487
Bst4CI	ACNGT	6 cut(s)	570, 928, 1039, 1465, 1699, 2170
Bst6I	CTCTTC	4 cut(s)	398, 1132, 2027, 2215
BstAFI	CTTAAG	1 cut(s)	1867
BstBAI	YACGTR	1 cut(s)	965
BstBI	TTCGAA	4 cut(s)	439, 862, 1087, 2030
BstC8I	GCNNGC	7 cut(s)	149, 829, 1105, 1781, 1832, 2175, 2472
BstDEI	CTNAG	7 cut(s)	117, 496, 1518, 1992, 2092, 2313, 2364
BstDSI	CCRYGG	1 cut(s)	2104
BstF5I	GGATG	9 cut(s)	198, 580, 669, 898, 1565, 1844, 2300, 2353, 2437
BstFNI	CGCG	1 cut(s)	283
BstKTI	GATC	9 cut(s)	423, 490, 1112, 1120, 1515, 1624, 1754, 1975, 2446
BstMAI	GTCTC	3 cut(s)	745, 2321, 2373
BstMBI	GATC	9 cut(s)	420, 487, 1109, 1117, 1512, 1621, 1751, 1972, 2443
BstMWI	GCNNNNNNNGC	7 cut(s)	194, 471, 606, 1347, 1541, 1840, 1849
BstNI	CCWGG	2 cut(s)	702, 2487
BstNSI	RCATGY	2 cut(s)	952, 1834
BstSCI	CCNGG	2 cut(s)	700, 2485
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	115, 946
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	4 cut(s)	420, 487, 1109, 1512
BstYI	RGATCY	4 cut(s)	420, 487, 1109, 1512
BsuI	GTATCC	1 cut(s)	2541
BsuRI	GGCC	5 cut(s)	843, 1209, 1692, 1843, 2494
BtgI	CCRYGG	1 cut(s)	2104
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	9 cut(s)	198, 580, 669, 898, 1565, 1844, 2300, 2353, 2437
BtsI	GCAGTG	2 cut(s)	107, 467
BtsIMutI	CAGTG	8 cut(s)	99, 107, 467, 602, 769, 1704, 2175, 2328
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	7 cut(s)	149, 829, 1105, 1781, 1832, 2175, 2472
CaiI	CAGNNNCTG	1 cut(s)	106
Cfr13I	GGNCC	5 cut(s)	734, 1471, 1979, 2318, 2492
CseI	GACGC	1 cut(s)	1260
Csp6I	GTAC	4 cut(s)	413, 946, 962, 1035
CspCI	CAANNNNNGTGG	2 cut(s)	1353, 1388
CviAII	CATG	9 cut(s)	317, 325, 346, 949, 1532, 1831, 2105, 2372, 2390
CviQI	GTAC	4 cut(s)	413, 946, 962, 1035
DdeI	CTNAG	7 cut(s)	117, 496, 1518, 1992, 2092, 2313, 2364
DpnI	GATC	9 cut(s)	422, 489, 1111, 1119, 1514, 1623, 1753, 1974, 2445
DpnII	GATC	9 cut(s)	420, 487, 1109, 1117, 1512, 1621, 1751, 1972, 2443
DraI	TTTAAA	1 cut(s)	678
DraIII	CACNNNGTG	1 cut(s)	1216
DriI	GACNNNNNGTC	2 cut(s)	758, 2316
EaeI	YGGCCR	4 cut(s)	841, 1207, 1690, 1841
Eam1104I	CTCTTC	4 cut(s)	398, 1132, 2027, 2215
Eam1105I	GACNNNNNGTC	2 cut(s)	758, 2316
EarI	CTCTTC	4 cut(s)	398, 1132, 2027, 2215
Eco130I	CCWWGG	7 cut(s)	519, 986, 1163, 2013, 2104, 2342, 2543
Eco24I	GRGCYC	1 cut(s)	1289
Eco31I	GGTCTC	1 cut(s)	745
Eco32I	GATATC	1 cut(s)	1455
Eco47I	GGWCC	4 cut(s)	734, 1471, 1979, 2318
Eco57I	CTGAAG	2 cut(s)	582, 1899
EcoO109I	RGGNCCY	1 cut(s)	1471
EcoRI	GAATTC	2 cut(s)	157, 1572
EcoRII	CCWGG	2 cut(s)	700, 2485
EcoRV	GATATC	1 cut(s)	1455
EcoT14I	CCWWGG	7 cut(s)	519, 986, 1163, 2013, 2104, 2342, 2543
EcoT22I	ATGCAT	3 cut(s)	351, 1150, 1836
EcoT38I	GRGCYC	1 cut(s)	1289
ErhI	CCWWGG	7 cut(s)	519, 986, 1163, 2013, 2104, 2342, 2543
FaeI	CATG	9 cut(s)	320, 328, 349, 952, 1535, 1834, 2108, 2375, 2393
FalI	AAGNNNNNCTT	2 cut(s)	1928, 1960
FaqI	GGGAC	2 cut(s)	1145, 1156
FatI	CATG	9 cut(s)	316, 324, 345, 948, 1531, 1830, 2104, 2371, 2389
FauI	CCCGC	1 cut(s)	1096
FauNDI	CATATG	1 cut(s)	694
FbaI	TGATCA	1 cut(s)	1972
Fnu4HI	GCNGC	4 cut(s)	129, 653, 935, 1339
FokI	GGATG	9 cut(s)	185, 587, 656, 905, 1552, 1831, 2307, 2360, 2444
FriOI	GRGCYC	1 cut(s)	1289
Fsp4HI	GCNGC	4 cut(s)	129, 653, 935, 1339
FspBI	CTAG	9 cut(s)	390, 657, 812, 828, 1121, 1214, 1635, 1680, 1857
GluI	GCNGC	4 cut(s)	129, 653, 935, 1339
GsaI	CCCAGC	1 cut(s)	1548
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	5 cut(s)	843, 1209, 1692, 1843, 2494
HapII	CCGG	4 cut(s)	776, 840, 1539, 1840
HgaI	GACGC	1 cut(s)	1260
Hin1II	CATG	9 cut(s)	320, 328, 349, 952, 1535, 1834, 2108, 2375, 2393
HpaII	CCGG	4 cut(s)	776, 840, 1539, 1840
HphI	GGTGA	4 cut(s)	1449, 2120, 2395, 2473
Hpy166II	GTNNAC	5 cut(s)	331, 362, 415, 550, 1904
Hpy8I	GTNNAC	5 cut(s)	331, 362, 415, 550, 1904
HpyAV	CCTTC	9 cut(s)	446, 773, 1174, 1234, 1462, 1480, 1669, 2293, 2455
HpyCH4III	ACNGT	6 cut(s)	570, 928, 1039, 1465, 1699, 2170
HpyCH4IV	ACGT	4 cut(s)	210, 740, 964, 1669
HpyF10VI	GCNNNNNNNGC	7 cut(s)	194, 471, 606, 1347, 1541, 1840, 1849
HpyF3I	CTNAG	7 cut(s)	117, 496, 1518, 1992, 2092, 2313, 2364
HpySE526I	ACGT	4 cut(s)	210, 740, 964, 1669
Hsp92II	CATG	9 cut(s)	320, 328, 349, 952, 1535, 1834, 2108, 2375, 2393
Kpn2I	TCCGGA	1 cut(s)	775
Ksp22I	TGATCA	1 cut(s)	1972
Kzo9I	GATC	9 cut(s)	420, 487, 1109, 1117, 1512, 1621, 1751, 1972, 2443
LguI	GCTCTTC	1 cut(s)	2215
LmnI	GCTCC	3 cut(s)	470, 767, 1774
Lsp1109I	GCAGC	2 cut(s)	115, 946
LweI	GCATC	8 cut(s)	160, 301, 596, 1135, 1157, 1196, 1499, 2269
MaeI	CTAG	9 cut(s)	390, 657, 812, 828, 1121, 1214, 1635, 1680, 1857
MaeII	ACGT	4 cut(s)	210, 740, 964, 1669
MaeIII	GTNAC	2 cut(s)	1741, 2218
MalI	GATC	9 cut(s)	422, 489, 1111, 1119, 1514, 1623, 1753, 1974, 2445
MboI	GATC	9 cut(s)	420, 487, 1109, 1117, 1512, 1621, 1751, 1972, 2443
MfeI	CAATTG	3 cut(s)	2266, 2331, 2531
MflI	RGATCY	4 cut(s)	420, 487, 1109, 1512
MhlI	GDGCHC	4 cut(s)	210, 467, 1289, 2093
MlsI	TGGCCA	2 cut(s)	1209, 1692
MluNI	TGGCCA	2 cut(s)	1209, 1692
MlyI	GAGTC	1 cut(s)	2305
MmeI	TCCRAC	2 cut(s)	552, 723
MnlI	CCTC	9 cut(s)	15, 1135, 1276, 1289, 1527, 2162, 2224, 2240, 2373
Mox20I	TGGCCA	2 cut(s)	1209, 1692
Mph1103I	ATGCAT	3 cut(s)	351, 1150, 1836
MroI	TCCGGA	1 cut(s)	775
MroXI	GAANNNNTTC	1 cut(s)	1083
MscI	TGGCCA	2 cut(s)	1209, 1692
MseI	TTAA	7 cut(s)	503, 677, 714, 1194, 1868, 1923, 2127
Msp20I	TGGCCA	2 cut(s)	1209, 1692
MspCI	CTTAAG	1 cut(s)	1867
MspI	CCGG	4 cut(s)	776, 840, 1539, 1840
MspR9I	CCNGG	2 cut(s)	702, 2487
MunI	CAATTG	3 cut(s)	2266, 2331, 2531
MvaI	CCWGG	2 cut(s)	702, 2487
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	7 cut(s)	194, 471, 606, 1347, 1541, 1840, 1849
NcoI	CCATGG	1 cut(s)	2104
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	9 cut(s)	420, 487, 1109, 1117, 1512, 1621, 1751, 1972, 2443
NheI	GCTAGC	1 cut(s)	827
NlaIII	CATG	9 cut(s)	320, 328, 349, 952, 1535, 1834, 2108, 2375, 2393
NlaIV	GGNNCC	3 cut(s)	1390, 1473, 2319
NmuCI	GTSAC	1 cut(s)	1741
NsiI	ATGCAT	3 cut(s)	351, 1150, 1836
NspI	RCATGY	2 cut(s)	952, 1834
NspV	TTCGAA	4 cut(s)	439, 862, 1087, 2030
PaeI	GCATGC	1 cut(s)	1834
PciI	ACATGT	1 cut(s)	948
PciSI	GCTCTTC	1 cut(s)	2215
PdmI	GAANNNNTTC	1 cut(s)	1083
PflMI	CCANNNNNTGG	2 cut(s)	1216, 1699
PkrI	GCNGC	4 cut(s)	130, 654, 936, 1340
PleI	GAGTC	1 cut(s)	2305
PpsI	GAGTC	1 cut(s)	2305
Ppu21I	YACGTR	1 cut(s)	965
PpuMI	RGGWCCY	1 cut(s)	1471
PscI	ACATGT	1 cut(s)	948
Psp5II	RGGWCCY	1 cut(s)	1471
Psp6I	CCWGG	2 cut(s)	700, 2485
PspFI	CCCAGC	1 cut(s)	1544
PspGI	CCWGG	2 cut(s)	700, 2485
PspN4I	GGNNCC	3 cut(s)	1390, 1473, 2319
PspPI	GGNCC	5 cut(s)	734, 1471, 1979, 2318, 2492
PspPPI	RGGWCCY	1 cut(s)	1471
PsrI	GAACNNNNNNTAC	4 cut(s)	897, 929, 938, 970
PstNI	CAGNNNCTG	1 cut(s)	106
PsuI	RGATCY	4 cut(s)	420, 487, 1109, 1512
RsaI	GTAC	4 cut(s)	414, 947, 963, 1036
RsaNI	GTAC	4 cut(s)	413, 946, 962, 1035
SapI	GCTCTTC	1 cut(s)	2215
SaqAI	TTAA	7 cut(s)	503, 677, 714, 1194, 1868, 1923, 2127
SatI	GCNGC	4 cut(s)	129, 653, 935, 1339
Sau3AI	GATC	9 cut(s)	420, 487, 1109, 1117, 1512, 1621, 1751, 1972, 2443
Sau96I	GGNCC	5 cut(s)	734, 1471, 1979, 2318, 2492
SchI	GAGTC	1 cut(s)	2305
ScrFI	CCNGG	2 cut(s)	702, 2487
SduI	GDGCHC	4 cut(s)	210, 467, 1289, 2093
SfaNI	GCATC	8 cut(s)	160, 301, 596, 1135, 1157, 1196, 1499, 2269
SfuI	TTCGAA	4 cut(s)	439, 862, 1087, 2030
SinI	GGWCC	4 cut(s)	734, 1471, 1979, 2318
SmlI	CTYRAG	2 cut(s)	748, 1867
SmoI	CTYRAG	2 cut(s)	748, 1867
SphI	GCATGC	1 cut(s)	1834
SsiI	CCGC	6 cut(s)	283, 653, 682, 1103, 1339, 1777
SspI	AATATT	1 cut(s)	979
SspMI	CTAG	9 cut(s)	390, 657, 812, 828, 1121, 1214, 1635, 1680, 1857
StyD4I	CCNGG	2 cut(s)	700, 2485
StyI	CCWWGG	7 cut(s)	519, 986, 1163, 2013, 2104, 2342, 2543
TaaI	ACNGT	6 cut(s)	570, 928, 1039, 1465, 1699, 2170
TaiI	ACGT	4 cut(s)	213, 743, 967, 1672
TauI	GCSGC	2 cut(s)	655, 1341
Tru1I	TTAA	7 cut(s)	503, 677, 714, 1194, 1868, 1923, 2127
Tru9I	TTAA	7 cut(s)	503, 677, 714, 1194, 1868, 1923, 2127
TscAI	CASTG	8 cut(s)	99, 107, 467, 602, 769, 1704, 2175, 2328
TseFI	GTSAC	1 cut(s)	1741
TseI	GCWGC	2 cut(s)	128, 934
Tsp45I	GTSAC	1 cut(s)	1741
TspRI	CASTG	8 cut(s)	99, 107, 467, 602, 769, 1704, 2175, 2328
Van91I	CCANNNNNTGG	2 cut(s)	1216, 1699
Vha464I	CTTAAG	1 cut(s)	1867
VpaK11BI	GGWCC	4 cut(s)	734, 1471, 1979, 2318
XapI	RAATTY	3 cut(s)	157, 1549, 1572
XbaI	TCTAGA	1 cut(s)	1634
XceI	RCATGY	2 cut(s)	952, 1834
XmnI	GAANNNNTTC	1 cut(s)	1083
XspI	CTAG	9 cut(s)	390, 657, 812, 828, 1121, 1214, 1635, 1680, 1857
Zsp2I	ATGCAT	3 cut(s)	351, 1150, 1836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.