Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009301

Physical Location & Seq

Genomic Coordinates Reverse (-)

888778 .. 893960

Gene Structure 5183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G001070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2877 bp

ATGGCCGACGTGTTCAATCCGGCAATCCGATCGGGTCAGAGTTCGGATCCGCAGCTCAAATCGGCGGAGGAGGCCTCGCCGTTTCCGAGGATCGAGTTTCATCTGGCGCGGAAGCCATTCAAGGGCTTTAACAATGACGGCAGTGACTTCCGGCCCGAGACGCTCAATCCGGGGAGCGGTGGCAGCTCGGATTCGCGTAAACCCGGCCCCCCGGGAGGTCAGGGTCAGTCGGGTTCGGGTTCGGGTTCCGGAGCGAAGAAGAGTGACGGGTCGGAGTTTTTGGAGAACGGGTGGGATCCGGAGCTCAGCTTTCCCATCACATTTCGGAGAATTGGTGCTGGTTTGATAAATATGGGGAATACTTGTTATCTCAATTCAGTGTTGCAGTGCCTGACATATACTGAGCCTTTAGCTGCATACCTGCAAAGTGGCAGGCATCGGAATTCTTGTCATATAAAAAATGGGTTTTGTGCTTTATGTGCCATCCAAGAACACGTCAGTCTTGCTTTACAATCAACCAAGAGCATTTTGCCAAAGGCTCTTGTCTTCAATCTACAACGCATATCGCGGAATTTTAGGAAGTCCAGACAGGAAGATGCACATGAATACATGGTAAACTTGCTGGAATCCATGCATAAATGTTGTTTACCATCTGGAGTGCCAAGTGAATCCCCTAGTGCCTATGAGAAGAGTTTGGTACACAAGATCTTTGGTGGTCGCCTTCGAAGTCGGGTCAAATGTTTGCAGTGCTCCTATTGCTCTGACAAGTTAGATCCATTCTTAGATTTAAGTCTTGAAATAGCCAAGGCAAACTCTTTGAATAAAGCACTTGTGAACTTTACTGCTGAAGAACAGTTGGATGGTGGGGAAAGGCAATATCAGTGCCAAAGATGCAATCAGAAAGTTAGAGCTATGAAACAGATGACCATTCACAAGCCGCCTAGTGTTCTGTCCATCCATTTAAAGCGGTTTCGTGCATATGACCCTGGACAAAAAATTAACAAAGAAGTTCAGTTTGGTCCTACGTTGGACTTGAGACCTTTTGTCAGTGGAGCATGTCCGGAAGGAGATTTGAAATATACTCTTTATGGGGTTCTAGTTCATTGTGGGGCTAGCACCTATTCCGGCCATTATTATTGCTTTGTTCGAACATCAACTGGCATATGGCACTCTCTGGATGACAACAATGTAAGGCAAGTTCGTGAGATGACTGTTTTGCAGCAAAAGGCTTACATGTTGTTCTATGTACGTGATAGAAGAAATATTATTCCAAGGAAGCCTGCTGATGTTGCTCAAAAGGAGTACTTCAAACCTAATGGTACTGTAAATAAAATTACTCCTACTGACAACCATTTGTCGAAAGAACCTATTCGAAAAATTGCAGTTGCGGGCAGATCAAATGATCTAACCTCTTCTGTTGCACAAAAAGATGCATCAGCTATTGTCCCAAGGGTGTCCCATTTGAAGGAAGCATCAGTTAATCAAAATAATGGCCACATAGTGGCACAAAATATGGTGCGTAAGAAGGAAGCCATTTCAGAATCGTCTTTGAAAGCATCATTATCAGAGGGCTCATTGGGAGGATTAGGAGAAAATATTCCACCATCTACTCTGCTTCCAAGCCGCAAAACTGGCACTTCTGATTCTGCAAGTGCTGTGGCTTCAACAACTGGTGCCAAACTAAATGACTGCAATGAGAAAGCAAGTTCAAATGATAATGATAGGGTTTCAATTATGATATCACCTGCTGTGAAGGACCCTGAAATCTTGAAGGCATCTAAGCCTGTTCAAGATGAGATCCCTCAGAATAAGAATCATGCTTCCGGTGCTGGGAATTTGAGTGTGGCTTCATCCAGAATTCCTAACGGTTTAACATTGGAGAAGCTGAATCCTGAAAAGCCATCTGATCCACCAAGCTCTAGAATCAGTCAGGCTGGAAGTTTTACCAATGAACGTGAGAAGGCTAGTGATTGTGGCCAGACAGTGATAGTTTCTGATTCTGCAAAATTGTCTGGCTCATCAGTTGTGACAAATAGATCATTAGATTTGGAAGCTCCTGACCGCAAGCACCCTAAAGGATTGAAAAAGAAGCACATAAAGTGTAAGGTGGTAGGCATGCATTTCCGGCCATCCTTGCTTTCTAGGGCAGTCTTAAGTGTGCAGATGAAGAAGAAGAAGCACAAAAGGAGTAAACACCCAACTTCAGATTGTAAGAGCCATAGTAAGAAATACTTGGTAGAAAATTATTGTTGTTCATCTGATCAAGGACCATCTACATCTGAGAAAACCCGGACAGATTCCTTGGTTTCTGTCTGTTCGAAGAGAAAGAGAAACAAATCTGGCTTGAAAACGGATGAAGATGGAACTTCTAATAAGTGCTCACTGAATCCCCATGGTGATTCTTCAATGGATATTAAAGATGTAGAGTTTAGAGAGAGCCTCATTCAGAATGGAACAGTGCTTGCAAGTGATAAACAACAACAAAATGGTTTTGGCTCTTCCTCTGTTACATTGGAAAACAAAAGGGTGTCGAGAGGAACTGATACTCCACACAATTGTAAAAGTGATGCAATGCAAAATGGATGGAAGGGCGTGCTGACTCAGGGTCCAGCGGAGACAATTGTTGCACCTTGGGATGGAATAGAATTGCCTCAGTCTCATGTTGTAGAACCAAGCCATGCACAGAGTATCACCATCGGTTATGTAGGAGATGATTGGGATGAAGAATATGATCGGGGAAAGAGAAAGAAGGTAAGGCAAGCAAAACTCACCCCTGGTGGGCCAAATCCTTTCCAAATACTTGCAAACAAGAAAGCACAATTGAAGCAACCAAGGATACAAAGGTTTGATTCTGGAAATCGACCAGTCAGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH

Protein Analysis

958

Amino Acids

105.07

Weight (kDa)

9.43

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	113 - 415	1.1e-61	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	113 - 396	2.4e-15	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57990
fragaria_vesca	FvH4_1g01010 FvH4_1g01010 FvH4_1g01010
malus_domestica	MD02G1008300.v1.1 MD15G1152500.v1.1
prunus_persica	Prupe.7G262200_v2.0.a1
pyrus_communis	pycom02g00720 pycom15g13710
rosa_chinensis	RchiOBHm_Chr2g0085751
rosa_laevigata	RLG00000015716
rosa_multiflora	Rmu_sc0009759.1_g000004 Rmu_sc0023131.1_g000003 Rmu_sc0033740.1_g000002
rosa_roxburghii	Rroxscaffold_2G00155070
rosa_rugosa	Rorug01G0462900 Rorug01G0462900
rosa_samantha	Rh2AG012000 Rh2BG012600 Rh2CG013400 Rh2DG014400
rosa_wichuraiana	Rw2G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1753
Acc36I	ACCTGC	2 cut(s)	429, 1753
AccB1I	GGYRCC	1 cut(s)	1673
AccB7I	CCANNNNNTGG	1 cut(s)	1501
AccBSI	CCGCTC	1 cut(s)	177
AccII	CGCG	3 cut(s)	109, 196, 568
AccIII	TCCGGA	3 cut(s)	248, 298, 1060
AclWI	GGATC	8 cut(s)	41, 54, 98, 290, 303, 767, 1792, 1901
AcoI	YGGCCR	5 cut(s)	3, 1126, 1492, 1975, 2126
AcsI	RAATTY	4 cut(s)	442, 571, 1834, 1857
AcuI	CTGAAG	2 cut(s)	867, 2187
AdeI	CACNNNGTG	1 cut(s)	1501
AfaI	GTAC	4 cut(s)	699, 1248, 1304, 1321
AfiI	CCNNNNNNNGG	8 cut(s)	122, 176, 215, 1465, 1501, 1830, 2636, 2778
AflII	CTTAAG	1 cut(s)	2152
AflIII	ACRYGT	3 cut(s)	9, 493, 1233
AhdI	GACNNNNNGTC	2 cut(s)	1043, 2604
AjiI	CACGTC	2 cut(s)	10, 496
AjnI	CCWGG	2 cut(s)	985, 2773
AjuI	GAANNNNNNNTTGG	2 cut(s)	999, 1031
AloI	GAACNNNNNNTCC	2 cut(s)	2530, 2562
Alw21I	GWGCWC	3 cut(s)	306, 752, 2381
Alw26I	GTCTC	4 cut(s)	152, 1030, 2609, 2661
AlwI	GGATC	8 cut(s)	41, 54, 98, 290, 303, 767, 1792, 1901
AlwNI	CAGNNNCTG	1 cut(s)	391
Ama87I	CYCGRG	2 cut(s)	155, 211
Aor13HI	TCCGGA	3 cut(s)	248, 298, 1060
AoxI	GGCC	9 cut(s)	3, 72, 152, 205, 1126, 1492, 1975, 2126, 2780
ApeKI	GCWGC	4 cut(s)	52, 183, 413, 1219
ApoI	RAATTY	4 cut(s)	442, 571, 1834, 1857
Asp700I	GAANNNNTTC	3 cut(s)	116, 1368, 1596
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	7 cut(s)	153, 206, 1019, 1756, 2267, 2606, 2780
AsuC2I	CCSGG	5 cut(s)	171, 204, 212, 213, 2290
AsuHPI	GGTGA	4 cut(s)	1734, 2408, 2683, 2761
AsuII	TTCGAA	4 cut(s)	724, 1147, 1372, 2318
AsuNHI	GCTAGC	1 cut(s)	1112
AvaI	CYCGRG	2 cut(s)	155, 211
AvaII	GGWCC	4 cut(s)	1019, 1756, 2267, 2606
BaeI	ACNNNNGTAYC	2 cut(s)	2828, 2861
BalI	TGGCCA	2 cut(s)	1494, 1977
BamHI	GGATCC	2 cut(s)	46, 295
BanI	GGYRCC	1 cut(s)	1673
BanII	GRGCYC	2 cut(s)	306, 1574
BbsI	GAAGAC	1 cut(s)	538
Bbv12I	GWGCWC	3 cut(s)	306, 752, 2381
BbvI	GCAGC	4 cut(s)	64, 195, 400, 1231
BceAI	ACGGC	2 cut(s)	64, 154
BcgI	CGANNNNNNTGC	2 cut(s)	12, 46
BciT130I	CCWGG	2 cut(s)	987, 2775
BciVI	GTATCC	1 cut(s)	2829
BclI	TGATCA	1 cut(s)	2260
BcnI	CCSGG	5 cut(s)	171, 204, 212, 213, 2290
BcoDI	GTCTC	4 cut(s)	152, 1030, 2609, 2661
BfaI	CTAG	7 cut(s)	675, 942, 1097, 1113, 1920, 1965, 2142
BfrI	CTTAAG	1 cut(s)	2152
BfuAI	ACCTGC	2 cut(s)	429, 1753
BfuI	GTATCC	1 cut(s)	2829
BglII	AGATCT	1 cut(s)	705
BisI	GCNGC	6 cut(s)	53, 184, 414, 938, 1220, 1624
BlpI	GCTNAGC	1 cut(s)	305
BlsI	GCNGC	6 cut(s)	54, 185, 415, 939, 1221, 1625
BmcAI	AGTACT	1 cut(s)	1304
Bme1390I	CCNGG	7 cut(s)	171, 204, 212, 213, 987, 2290, 2775
Bme18I	GGWCC	4 cut(s)	1019, 1756, 2267, 2606
BmeRI	GACNNNNNGTC	2 cut(s)	1043, 2604
BmeT110I	CYCGRG	2 cut(s)	155, 211
BmgBI	CACGTC	2 cut(s)	10, 496
BmgT120I	GGNCC	7 cut(s)	153, 206, 1019, 1756, 2267, 2606, 2780
BmiI	GGNNCC	7 cut(s)	48, 208, 247, 297, 1675, 1758, 2607
BmrFI	CCNGG	7 cut(s)	171, 204, 212, 213, 987, 2290, 2775
BmsI	GCATC	9 cut(s)	445, 586, 881, 1420, 1442, 1481, 1565, 1784, 2557
BmtI	GCTAGC	1 cut(s)	1116
BpiI	GAAGAC	1 cut(s)	538
BplI	GAGNNNNNCTC	4 cut(s)	59, 91, 2424, 2456
BpmI	CTGGAG	1 cut(s)	675
Bpu1102I	GCTNAGC	1 cut(s)	305
Bpu14I	TTCGAA	4 cut(s)	724, 1147, 1372, 2318
BpuEI	CTTGAG	1 cut(s)	1054
BpuMI	CCSGG	5 cut(s)	171, 204, 212, 213, 2290
BsaAI	YACGTR	1 cut(s)	1250
BsaI	GGTCTC	1 cut(s)	1030
BsaWI	WCCGGW	4 cut(s)	248, 298, 1060, 1823
BsaXI	ACNNNNNCTCC	6 cut(s)	275, 305, 319, 349, 2530, 2560
Bsc4I	CCNNNNNNNGG	8 cut(s)	122, 176, 215, 1465, 1501, 1830, 2636, 2778
Bse1I	ACTGG	4 cut(s)	1162, 1636, 1675, 2864
Bse3DI	GCAATG	2 cut(s)	1699, 2577
BseAI	TCCGGA	3 cut(s)	248, 298, 1060
BseBI	CCWGG	2 cut(s)	987, 2775
BseLI	CCNNNNNNNGG	8 cut(s)	122, 176, 215, 1465, 1501, 1830, 2636, 2778
BseMI	GCAATG	2 cut(s)	1699, 2577
BseMII	CTCAG	6 cut(s)	319, 393, 1817, 2271, 2615, 2666
BseNI	ACTGG	4 cut(s)	1162, 1636, 1675, 2864
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	4 cut(s)	64, 195, 400, 1231
BseYI	CCCAGC	1 cut(s)	1829
BsgI	GTGCAG	1 cut(s)	2180
Bsh1236I	CGCG	3 cut(s)	109, 196, 568
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	9 cut(s)	5, 74, 154, 207, 1128, 1494, 1977, 2128, 2782
BshNI	GGYRCC	1 cut(s)	1673
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	3 cut(s)	306, 752, 2381
BsiHKCI	CYCGRG	2 cut(s)	155, 211
BslFI	GGGAC	2 cut(s)	1430, 1441
BslI	CCNNNNNNNGG	8 cut(s)	122, 176, 215, 1465, 1501, 1830, 2636, 2778
BsmAI	GTCTC	4 cut(s)	152, 1030, 2609, 2661
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	2 cut(s)	1430, 1441
BsnI	GGCC	9 cut(s)	5, 74, 154, 207, 1128, 1494, 1977, 2128, 2782
Bso31I	GGTCTC	1 cut(s)	1030
BsoBI	CYCGRG	2 cut(s)	155, 211
Bsp119I	TTCGAA	4 cut(s)	724, 1147, 1372, 2318
Bsp1286I	GDGCHC	4 cut(s)	306, 752, 1574, 2381
Bsp13I	TCCGGA	3 cut(s)	248, 298, 1060
Bsp1720I	GCTNAGC	1 cut(s)	305
Bsp19I	CCATGG	1 cut(s)	2392
BspANI	GGCC	9 cut(s)	5, 74, 154, 207, 1128, 1494, 1977, 2128, 2782
BspCNI	CTCAG	6 cut(s)	318, 394, 1816, 2272, 2614, 2665
BspEI	TCCGGA	3 cut(s)	248, 298, 1060
BspFNI	CGCG	3 cut(s)	109, 196, 568
BspLI	GGNNCC	7 cut(s)	48, 208, 247, 297, 1675, 1758, 2607
BspMI	ACCTGC	2 cut(s)	429, 1753
BspOI	GCTAGC	1 cut(s)	1116
BspPI	GGATC	8 cut(s)	41, 54, 98, 290, 303, 767, 1792, 1901
BspQI	GCTCTTC	1 cut(s)	2503
BspT104I	TTCGAA	4 cut(s)	724, 1147, 1372, 2318
BspT107I	GGYRCC	1 cut(s)	1673
BspTI	CTTAAG	1 cut(s)	2152
BspTNI	GGTCTC	1 cut(s)	1030
BsrBI	CCGCTC	1 cut(s)	177
BsrDI	GCAATG	2 cut(s)	1699, 2577
BsrI	ACTGG	4 cut(s)	1162, 1636, 1675, 2864
BssT1I	CCWWGG	7 cut(s)	804, 1271, 1448, 2301, 2392, 2630, 2831
Bst2UI	CCWGG	2 cut(s)	987, 2775
Bst4CI	ACNGT	6 cut(s)	855, 1213, 1324, 1868, 1984, 2458
Bst6I	CTCTTC	5 cut(s)	254, 683, 1417, 2315, 2503
BstAFI	CTTAAG	1 cut(s)	2152
BstBAI	YACGTR	1 cut(s)	1250
BstBI	TTCGAA	4 cut(s)	724, 1147, 1372, 2318
BstC8I	GCNNGC	9 cut(s)	434, 1114, 1281, 1390, 2066, 2117, 2463, 2594, 2760
BstDEI	CTNAG	8 cut(s)	305, 402, 781, 1779, 1803, 2280, 2601, 2652
BstDSI	CCRYGG	1 cut(s)	2392
BstFNI	CGCG	3 cut(s)	109, 196, 568
BstHHI	GCGC	1 cut(s)	109
BstMAI	GTCTC	4 cut(s)	152, 1030, 2609, 2661
BstMCI	CGRYCG	1 cut(s)	32
BstNI	CCWGG	2 cut(s)	987, 2775
BstNSI	RCATGY	3 cut(s)	1059, 1237, 2119
BstSCI	CCNGG	7 cut(s)	169, 202, 210, 211, 985, 2288, 2773
BstUI	CGCG	3 cut(s)	109, 196, 568
BstV1I	GCAGC	4 cut(s)	64, 195, 400, 1231
BstV2I	GAAGAC	1 cut(s)	538
BstX2I	RGATCY	5 cut(s)	46, 295, 705, 772, 1797
BstYI	RGATCY	5 cut(s)	46, 295, 705, 772, 1797
BsuI	GTATCC	1 cut(s)	2829
BsuRI	GGCC	9 cut(s)	5, 74, 154, 207, 1128, 1494, 1977, 2128, 2782
BtgI	CCRYGG	1 cut(s)	2392
BtrI	CACGTC	2 cut(s)	10, 496
BtsI	GCAGTG	3 cut(s)	148, 392, 752
BtsIMutI	CAGTG	9 cut(s)	148, 384, 392, 752, 887, 1054, 1989, 2381, 2463
BveI	ACCTGC	2 cut(s)	429, 1753
Cac8I	GCNNGC	9 cut(s)	434, 1114, 1281, 1390, 2066, 2117, 2463, 2594, 2760
CaiI	CAGNNNCTG	1 cut(s)	391
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	7 cut(s)	153, 206, 1019, 1756, 2267, 2606, 2780
Cfr9I	CCCGGG	1 cut(s)	211
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	4 cut(s)	698, 1247, 1303, 1320
CspCI	CAANNNNNGTGG	2 cut(s)	1638, 1673
CviQI	GTAC	4 cut(s)	698, 1247, 1303, 1320
DdeI	CTNAG	8 cut(s)	305, 402, 781, 1779, 1803, 2280, 2601, 2652
DraI	TTTAAA	1 cut(s)	963
DraIII	CACNNNGTG	1 cut(s)	1501
DriI	GACNNNNNGTC	2 cut(s)	1043, 2604
EaeI	YGGCCR	5 cut(s)	3, 1126, 1492, 1975, 2126
Eam1104I	CTCTTC	5 cut(s)	254, 683, 1417, 2315, 2503
Eam1105I	GACNNNNNGTC	2 cut(s)	1043, 2604
EarI	CTCTTC	5 cut(s)	254, 683, 1417, 2315, 2503
EciI	GGCGGA	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	7 cut(s)	804, 1271, 1448, 2301, 2392, 2630, 2831
Eco147I	AGGCCT	1 cut(s)	74
Eco24I	GRGCYC	2 cut(s)	306, 1574
Eco31I	GGTCTC	1 cut(s)	1030
Eco32I	GATATC	1 cut(s)	1740
Eco47I	GGWCC	4 cut(s)	1019, 1756, 2267, 2606
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	2 cut(s)	867, 2187
Eco88I	CYCGRG	2 cut(s)	155, 211
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	1756
EcoRI	GAATTC	2 cut(s)	442, 1857
EcoRII	CCWGG	2 cut(s)	985, 2773
EcoRV	GATATC	1 cut(s)	1740
EcoT14I	CCWWGG	7 cut(s)	804, 1271, 1448, 2301, 2392, 2630, 2831
EcoT22I	ATGCAT	3 cut(s)	636, 1435, 2121
EcoT38I	GRGCYC	2 cut(s)	306, 1574
ErhI	CCWWGG	7 cut(s)	804, 1271, 1448, 2301, 2392, 2630, 2831
Esp3I	CGTCTC	1 cut(s)	152
FalI	AAGNNNNNCTT	4 cut(s)	1289, 1321, 2216, 2248
FaqI	GGGAC	2 cut(s)	1430, 1441
FauI	CCCGC	1 cut(s)	1381
FauNDI	CATATG	2 cut(s)	979, 1163
FbaI	TGATCA	1 cut(s)	2260
Fnu4HI	GCNGC	6 cut(s)	53, 184, 414, 938, 1220, 1624
FriOI	GRGCYC	2 cut(s)	306, 1574
Fsp4HI	GCNGC	6 cut(s)	53, 184, 414, 938, 1220, 1624
FspBI	CTAG	7 cut(s)	675, 942, 1097, 1113, 1920, 1965, 2142
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	6 cut(s)	53, 184, 414, 938, 1220, 1624
GsaI	CCCAGC	1 cut(s)	1833
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	9 cut(s)	5, 74, 154, 207, 1128, 1494, 1977, 2128, 2782
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HphI	GGTGA	4 cut(s)	1734, 2408, 2683, 2761
Hpy166II	GTNNAC	6 cut(s)	200, 616, 647, 700, 835, 2192
Hpy8I	GTNNAC	6 cut(s)	200, 616, 647, 700, 835, 2192
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	9 cut(s)	731, 1058, 1459, 1519, 1747, 1765, 1954, 2581, 2743
HpyCH4III	ACNGT	6 cut(s)	855, 1213, 1324, 1868, 1984, 2458
HpyCH4IV	ACGT	5 cut(s)	9, 495, 1025, 1249, 1954
HpyF3I	CTNAG	8 cut(s)	305, 402, 781, 1779, 1803, 2280, 2601, 2652
HpySE526I	ACGT	5 cut(s)	9, 495, 1025, 1249, 1954
HspAI	GCGC	1 cut(s)	107
Kpn2I	TCCGGA	3 cut(s)	248, 298, 1060
Ksp22I	TGATCA	1 cut(s)	2260
LguI	GCTCTTC	1 cut(s)	2503
LmnI	GCTCC	6 cut(s)	174, 251, 301, 755, 1052, 2059
Lsp1109I	GCAGC	4 cut(s)	64, 195, 400, 1231
LweI	GCATC	9 cut(s)	445, 586, 881, 1420, 1442, 1481, 1565, 1784, 2557
MaeI	CTAG	7 cut(s)	675, 942, 1097, 1113, 1920, 1965, 2142
MaeII	ACGT	5 cut(s)	9, 495, 1025, 1249, 1954
MaeIII	GTNAC	4 cut(s)	143, 263, 2026, 2506
MbiI	CCGCTC	1 cut(s)	177
MfeI	CAATTG	3 cut(s)	2554, 2619, 2819
MflI	RGATCY	5 cut(s)	46, 295, 705, 772, 1797
MhlI	GDGCHC	4 cut(s)	306, 752, 1574, 2381
MlsI	TGGCCA	2 cut(s)	1494, 1977
MluNI	TGGCCA	2 cut(s)	1494, 1977
MlyI	GAGTC	1 cut(s)	2593
MmeI	TCCRAC	3 cut(s)	252, 837, 1008
Mox20I	TGGCCA	2 cut(s)	1494, 1977
Mph1103I	ATGCAT	3 cut(s)	636, 1435, 2121
MroI	TCCGGA	3 cut(s)	248, 298, 1060
MroXI	GAANNNNTTC	3 cut(s)	116, 1368, 1596
MscI	TGGCCA	2 cut(s)	1494, 1977
MseI	TTAA	8 cut(s)	129, 788, 962, 999, 1479, 1871, 2153, 2415
Msp20I	TGGCCA	2 cut(s)	1494, 1977
MspA1I	CMGCKG	1 cut(s)	2612
MspCI	CTTAAG	1 cut(s)	2152
MspR9I	CCNGG	7 cut(s)	171, 204, 212, 213, 987, 2290, 2775
MunI	CAATTG	3 cut(s)	2554, 2619, 2819
MvaI	CCWGG	2 cut(s)	987, 2775
MvnI	CGCG	3 cut(s)	109, 196, 568
NciI	CCSGG	5 cut(s)	171, 204, 212, 213, 2290
NcoI	CCATGG	1 cut(s)	2392
NdeI	CATATG	2 cut(s)	979, 1163
NheI	GCTAGC	1 cut(s)	1112
NlaIV	GGNNCC	7 cut(s)	48, 208, 247, 297, 1675, 1758, 2607
NmuCI	GTSAC	3 cut(s)	143, 263, 2026
NsiI	ATGCAT	3 cut(s)	636, 1435, 2121
NspI	RCATGY	3 cut(s)	1059, 1237, 2119
NspV	TTCGAA	4 cut(s)	724, 1147, 1372, 2318
PaeI	GCATGC	1 cut(s)	2119
PaqCI	CACCTGC	1 cut(s)	1753
PceI	AGGCCT	1 cut(s)	74
PciI	ACATGT	1 cut(s)	1233
PciSI	GCTCTTC	1 cut(s)	2503
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PdmI	GAANNNNTTC	3 cut(s)	116, 1368, 1596
PflMI	CCANNNNNTGG	1 cut(s)	1501
PkrI	GCNGC	6 cut(s)	54, 185, 415, 939, 1221, 1625
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	1 cut(s)	2593
PpsI	GAGTC	1 cut(s)	2593
Ppu21I	YACGTR	1 cut(s)	1250
PpuMI	RGGWCCY	1 cut(s)	1756
PscI	ACATGT	1 cut(s)	1233
Psp124BI	GAGCTC	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	1756
Psp6I	CCWGG	2 cut(s)	985, 2773
PspFI	CCCAGC	1 cut(s)	1829
PspGI	CCWGG	2 cut(s)	985, 2773
PspN4I	GGNNCC	7 cut(s)	48, 208, 247, 297, 1675, 1758, 2607
PspPI	GGNCC	7 cut(s)	153, 206, 1019, 1756, 2267, 2606, 2780
PspPPI	RGGWCCY	1 cut(s)	1756
PsrI	GAACNNNNNNTAC	2 cut(s)	1182, 1214
PstNI	CAGNNNCTG	1 cut(s)	391
PsuI	RGATCY	5 cut(s)	46, 295, 705, 772, 1797
PvuI	CGATCG	1 cut(s)	32
RsaI	GTAC	4 cut(s)	699, 1248, 1304, 1321
RsaNI	GTAC	4 cut(s)	698, 1247, 1303, 1320
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	2503
SaqAI	TTAA	8 cut(s)	129, 788, 962, 999, 1479, 1871, 2153, 2415
SatI	GCNGC	6 cut(s)	53, 184, 414, 938, 1220, 1624
Sau96I	GGNCC	7 cut(s)	153, 206, 1019, 1756, 2267, 2606, 2780
ScaI	AGTACT	1 cut(s)	1304
SchI	GAGTC	1 cut(s)	2593
ScrFI	CCNGG	7 cut(s)	171, 204, 212, 213, 987, 2290, 2775
SduI	GDGCHC	4 cut(s)	306, 752, 1574, 2381
SfaNI	GCATC	9 cut(s)	445, 586, 881, 1420, 1442, 1481, 1565, 1784, 2557
SfuI	TTCGAA	4 cut(s)	724, 1147, 1372, 2318
SinI	GGWCC	4 cut(s)	1019, 1756, 2267, 2606
SmaI	CCCGGG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	1033, 2152
SmoI	CTYRAG	2 cut(s)	1033, 2152
SphI	GCATGC	1 cut(s)	2119
SseBI	AGGCCT	1 cut(s)	74
SspI	AATATT	2 cut(s)	1264, 1597
SspMI	CTAG	7 cut(s)	675, 942, 1097, 1113, 1920, 1965, 2142
SstI	GAGCTC	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	7 cut(s)	169, 202, 210, 211, 985, 2288, 2773
StyI	CCWWGG	7 cut(s)	804, 1271, 1448, 2301, 2392, 2630, 2831
TaaI	ACNGT	6 cut(s)	855, 1213, 1324, 1868, 1984, 2458
TaiI	ACGT	5 cut(s)	12, 498, 1028, 1252, 1957
TaqI	TCGA	8 cut(s)	93, 724, 1147, 1358, 1372, 2318, 2531, 2860
TatI	WGTACW	1 cut(s)	1302
TauI	GCSGC	2 cut(s)	940, 1626
Tru1I	TTAA	8 cut(s)	129, 788, 962, 999, 1479, 1871, 2153, 2415
Tru9I	TTAA	8 cut(s)	129, 788, 962, 999, 1479, 1871, 2153, 2415
TscAI	CASTG	9 cut(s)	148, 384, 392, 752, 887, 1054, 1989, 2388, 2463
TseFI	GTSAC	3 cut(s)	143, 263, 2026
TseI	GCWGC	4 cut(s)	52, 183, 413, 1219
Tsp45I	GTSAC	3 cut(s)	143, 263, 2026
TspGWI	ACGGA	1 cut(s)	2366
TspMI	CCCGGG	1 cut(s)	211
TspRI	CASTG	9 cut(s)	148, 384, 392, 752, 887, 1054, 1989, 2388, 2463
Van91I	CCANNNNNTGG	1 cut(s)	1501
Vha464I	CTTAAG	1 cut(s)	2152
VpaK11BI	GGWCC	4 cut(s)	1019, 1756, 2267, 2606
XapI	RAATTY	4 cut(s)	442, 571, 1834, 1857
XbaI	TCTAGA	1 cut(s)	1919
XceI	RCATGY	3 cut(s)	1059, 1237, 2119
XmaI	CCCGGG	1 cut(s)	211
XmnI	GAANNNNTTC	3 cut(s)	116, 1368, 1596
XspI	CTAG	7 cut(s)	675, 942, 1097, 1113, 1920, 1965, 2142
ZrmI	AGTACT	1 cut(s)	1304
Zsp2I	ATGCAT	3 cut(s)	636, 1435, 2121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.