Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005548

Physical Location & Seq

Genomic Coordinates Forward (+)

10353773 .. 10355251

Gene Structure 1479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGGAAGTCAACAAATTATTGCAGTCCCGACTTTAATAACAGAAGAATCACAGGAACTCTTTCGAGAAATGGTAGGTGAATCCTTCAATGATCCTGATTTACGTTCCACCGCAAAAGATGTCGTGAAGGAATGTGGAGGTTTACCTATTGCAATTGTAACTGTTGGAAAAGCCCTAGAAAAGAAAACGAAGCATGAATGGGATGATGCCCTCAATCAACTGCGAAATTCTAACCCAGTGGACAGCAAAGTTTATTCTAGCACAAAATGGAGTCATGATAGATTGGAGAGTGATGAAGCCAAGTCATGTCTTGTACGTTGTTGTTTATTTCCAGAAGATTATGATATTCCCATTAAGTATTTGGTTCGATATAGGTGGGGTCGAGGATATTTTAGCAACAACTTTACTTTGGAAGATACAAGAAATAGAGTGCATTCGTTGGTTGACCAACTACAAAGAAGGTTTTTGTTGATAGATGGTATCACGGATGAGACTAAGAAAATGCATGACATAGTTCGCGATGTTGCTATATTGATTGCTTCAAGAGATCCACATGGATTTCTGATAAGAAGTCATGCTGGGTGGCCAAATTTACCTACATATGACCATTACACTAGATTCTCACTTGTTGGCGAATTGGAGATTCAAGATGGTTTGAAATGCCCAAAACTTGAGCTTCTACAGATGATGGAAGGATGTTTTTCAGATGGTAGCATGGACATCACTTGTAAGGCGATGAAAGAAGTGAAGGTTTTAGCTCTGGTGGAAATGGAAGACCTAGGCTCATTAGGATCACTAGGATTACTGAAGAACCTGCGGACCTTGTGCCTAGATGGAAATCCTCGGCTTTCGGGATTGTTATCCATGCGTGAGTTGCCGAGGGAAATTGGACAACTTAAACAGTTAAGGTTGTTAGATACGACAAATTGCCTTACTCTGGTGATTCCACATGGTATCTTCTCCAGCTTATGTAGACTTGAAGAGTTGTATATGTACAAAAGCTTTACAAAATGGGAAATTGGAACAGGAAGAGAAGATAAGGGGATGGCAAGCATTTCTGAGGTGATGTCAATGTCATCCACTTGTCGTGGTGAAAGTTATAGGAAGTTGATGACGACAACGTATGCGTTCGAAAATTGTTTGGTGATTGATGAAGGTGATGCAAGGGAGTTGATAGAGAGTCAAGCAGTTAGACTTTTGTTGAGAAAATCTAAAAAATTGATTTTGCACAATGTTAAGAATTTCTCTGTCCTCACTGATTTAGACCAAGAGGGATTTCAAGATTTGTATCTTTTGAATTGTCCAAATACCGAGTATCTTGCAAATGGAACAAGTGTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

448

Amino Acids

50.78

Weight (kDa)

5.64

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	245 - 333	4.8e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005548)

Species	Orthologous Gene IDs
malus_domestica	MD03G1081300.v1.1 MD11G1085800.v1.1 MD11G1086000.v1.1 MD11G1086600.v1.1 MD11G1087300.v1.1 MD11G1088400.v1.1 MD11G1089600.v1.1 MD11G1090100.v1.1
prunus_persica	Prupe.2G025200_v2.0.a1 Prupe.2G025200_v2.0.a1 Prupe.2G025200_v2.0.a1 Prupe.2G025400_v2.0.a1 Prupe.2G027200_v2.0.a1 Prupe.2G029200_v2.0.a1 Prupe.2G029300_v2.0.a1 Prupe.2G029300_v2.0.a1 Prupe.3G141500_v2.0.a1 Prupe.7G035000_v2.0.a1 Prupe.7G035600_v2.0.a1 Prupe.7G036900_v2.0.a1 Prupe.7G037500_v2.0.a1 Prupe.7G037500_v2.0.a1 Prupe.7G037500_v2.0.a1 Prupe.7G037700_v2.0.a1
pyrus_communis	pycom11g07400 pycom11g07460 pycom11g07480 pycom11g07490 pycom15g14960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	822
AccI	GTMKAC	1 cut(s)	973
AccII	CGCG	1 cut(s)	519
AciI	CCGC	2 cut(s)	111, 817
AclWI	GGATC	3 cut(s)	86, 542, 799
AcoI	YGGCCR	1 cut(s)	584
AcsI	RAATTY	3 cut(s)	226, 589, 1240
AcuI	CTGAAG	1 cut(s)	827
AfaI	GTAC	2 cut(s)	315, 995
AfiI	CCNNNNNNNGG	1 cut(s)	937
AgsI	TTSAA	7 cut(s)	88, 543, 647, 658, 980, 1280, 1297
AjuI	GAANNNNNNNTTGG	2 cut(s)	1260, 1292
AluBI	AGCT	4 cut(s)	676, 758, 966, 1002
AluI	AGCT	4 cut(s)	676, 758, 966, 1002
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	3 cut(s)	86, 542, 799
AoxI	GGCC	1 cut(s)	584
ApoI	RAATTY	3 cut(s)	226, 589, 1240
Asp700I	GAANNNNTTC	1 cut(s)	60
AspA2I	CCTAGG	1 cut(s)	778
AspS9I	GGNCC	1 cut(s)	819
AsuHPI	GGTGA	6 cut(s)	89, 952, 1075, 1103, 1156, 1169
AsuII	TTCGAA	1 cut(s)	1131
AvaII	GGWCC	1 cut(s)	819
AvrII	CCTAGG	1 cut(s)	778
BalI	TGGCCA	1 cut(s)	586
BbsI	GAAGAC	1 cut(s)	780
BccI	CCATC	6 cut(s)	470, 644, 682, 701, 827, 1039
BcgI	CGANNNNNNTGC	2 cut(s)	1301, 1335
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	6 cut(s)	176, 258, 615, 779, 797, 830
BfmI	CTRYAG	1 cut(s)	680
BfuAI	ACCTGC	1 cut(s)	822
BlnI	CCTAGG	1 cut(s)	778
Bme18I	GGWCC	1 cut(s)	819
BmgT120I	GGNCC	1 cut(s)	819
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	2 cut(s)	196, 1150
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	780
BpmI	CTGGAG	1 cut(s)	946
Bpu14I	TTCGAA	1 cut(s)	1131
BpuEI	CTTGAG	1 cut(s)	692
BsaBI	GATNNNNATC	3 cut(s)	837, 859, 1287
BsaJI	CCNNGG	3 cut(s)	778, 842, 878
Bsc4I	CCNNNNNNNGG	1 cut(s)	937
Bse1I	ACTGG	1 cut(s)	236
Bse8I	GATNNNNATC	3 cut(s)	837, 859, 1287
BseDI	CCNNGG	3 cut(s)	778, 842, 878
BseGI	GGATG	5 cut(s)	208, 493, 701, 1050, 1076
BseJI	GATNNNNATC	3 cut(s)	837, 859, 1287
BseLI	CCNNNNNNNGG	1 cut(s)	937
BseMII	CTCAG	1 cut(s)	1050
BseNI	ACTGG	1 cut(s)	236
BseYI	CCCAGC	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	1 cut(s)	586
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	937
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	586
Bsp119I	TTCGAA	1 cut(s)	1131
Bsp1407I	TGTACA	1 cut(s)	993
Bsp143I	GATC	3 cut(s)	91, 547, 791
Bsp68I	TCGCGA	1 cut(s)	519
BspACI	CCGC	2 cut(s)	111, 817
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	1 cut(s)	1051
BspFNI	CGCG	1 cut(s)	519
BspHI	TCATGA	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	822
BspPI	GGATC	3 cut(s)	86, 542, 799
BspT104I	TTCGAA	1 cut(s)	1131
BsrGI	TGTACA	1 cut(s)	993
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	778, 842, 878
BssMI	GATC	3 cut(s)	91, 547, 791
BssT1I	CCWWGG	1 cut(s)	778
Bst4CI	ACNGT	2 cut(s)	163, 903
Bst6I	CTCTTC	2 cut(s)	975, 1024
BstAUI	TGTACA	1 cut(s)	993
BstBI	TTCGAA	1 cut(s)	1131
BstC8I	GCNNGC	1 cut(s)	1051
BstDEI	CTNAG	2 cut(s)	495, 1059
BstF5I	GGATG	5 cut(s)	208, 493, 701, 1050, 1076
BstFNI	CGCG	1 cut(s)	519
BstKTI	GATC	3 cut(s)	94, 550, 794
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	3 cut(s)	91, 547, 791
BstMWI	GCNNNNNNNGC	1 cut(s)	874
BstSFI	CTRYAG	1 cut(s)	680
BstUI	CGCG	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	780
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	586
BtgZI	GCGATG	2 cut(s)	534, 749
BtsCI	GGATG	5 cut(s)	208, 493, 701, 1050, 1076
BtsIMutI	CAGTG	2 cut(s)	243, 1254
BtuMI	TCGCGA	1 cut(s)	519
BveI	ACCTGC	1 cut(s)	822
Cac8I	GCNNGC	1 cut(s)	1051
CciI	TCATGA	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	819
Csp6I	GTAC	2 cut(s)	314, 994
CviAII	CATG	9 cut(s)	194, 275, 306, 506, 554, 575, 715, 865, 950
CviJI	RGCY	9 cut(s)	173, 299, 586, 676, 758, 783, 847, 966, 1002
CviKI_1	RGCY	9 cut(s)	173, 299, 586, 676, 758, 783, 847, 966, 1002
CviQI	GTAC	2 cut(s)	314, 994
DdeI	CTNAG	2 cut(s)	495, 1059
DpnI	GATC	3 cut(s)	93, 549, 793
DpnII	GATC	3 cut(s)	91, 547, 791
EaeI	YGGCCR	1 cut(s)	584
Eam1104I	CTCTTC	2 cut(s)	975, 1024
EarI	CTCTTC	2 cut(s)	975, 1024
Eco130I	CCWWGG	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	819
Eco57I	CTGAAG	1 cut(s)	827
EcoT14I	CCWWGG	1 cut(s)	778
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	778
FaeI	CATG	9 cut(s)	197, 278, 309, 509, 557, 578, 718, 868, 953
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	9 cut(s)	193, 274, 305, 505, 553, 574, 714, 864, 949
FauNDI	CATATG	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	973
FokI	GGATG	5 cut(s)	215, 500, 708, 1057, 1063
FspBI	CTAG	6 cut(s)	176, 258, 615, 779, 797, 830
GsaI	CCCAGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	946
HaeIII	GGCC	1 cut(s)	586
Hin1II	CATG	9 cut(s)	197, 278, 309, 509, 557, 578, 718, 868, 953
HincII	GTYRAC	2 cut(s)	11, 445
HindII	GTYRAC	2 cut(s)	11, 445
HindIII	AAGCTT	1 cut(s)	1000
HinfI	GANTC	7 cut(s)	47, 80, 271, 618, 643, 943, 1180
HphI	GGTGA	6 cut(s)	89, 952, 1075, 1103, 1156, 1169
Hpy166II	GTNNAC	5 cut(s)	11, 143, 241, 445, 974
Hpy188I	TCNGA	3 cut(s)	564, 706, 1060
Hpy8I	GTNNAC	5 cut(s)	11, 143, 241, 445, 974
HpyAV	CCTTC	6 cut(s)	94, 121, 453, 686, 742, 1148
HpyCH4III	ACNGT	2 cut(s)	163, 903
HpyCH4IV	ACGT	3 cut(s)	103, 316, 1121
HpyCH4V	TGCA	7 cut(s)	23, 152, 433, 505, 1163, 1228, 1322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	874
HpyF3I	CTNAG	2 cut(s)	495, 1059
HpySE526I	ACGT	3 cut(s)	103, 316, 1121
Hsp92II	CATG	9 cut(s)	197, 278, 309, 509, 557, 578, 718, 868, 953
Kzo9I	GATC	3 cut(s)	91, 547, 791
LweI	GCATC	2 cut(s)	196, 1150
MaeI	CTAG	6 cut(s)	176, 258, 615, 779, 797, 830
MaeII	ACGT	3 cut(s)	103, 316, 1121
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	3 cut(s)	93, 549, 793
MboI	GATC	3 cut(s)	91, 547, 791
MboII	GAAGA	9 cut(s)	56, 347, 425, 785, 820, 949, 992, 1041, 1046
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	547
MlsI	TGGCCA	1 cut(s)	586
MluNI	TGGCCA	1 cut(s)	586
MlyI	GAGTC	2 cut(s)	280, 1189
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	8 cut(s)	131, 221, 377, 852, 873, 1054, 1262, 1264
Mox20I	TGGCCA	1 cut(s)	586
Mph1103I	ATGCAT	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	586
MseI	TTAA	5 cut(s)	35, 354, 897, 905, 1236
Msp20I	TGGCCA	1 cut(s)	586
MunI	CAATTG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	433
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	874
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	3 cut(s)	91, 547, 791
NlaIII	CATG	9 cut(s)	197, 278, 309, 509, 557, 578, 718, 868, 953
NmeAIII	GCCGAG	2 cut(s)	823, 903
NruI	TCGCGA	1 cut(s)	519
NsiI	ATGCAT	1 cut(s)	507
NspV	TTCGAA	1 cut(s)	1131
PagI	TCATGA	1 cut(s)	274
PctI	GAATGC	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	5 cut(s)	47, 80, 618, 643, 943
PleI	GAGTC	2 cut(s)	279, 1188
PpsI	GAGTC	2 cut(s)	279, 1188
PspFI	CCCAGC	1 cut(s)	578
PspPI	GGNCC	1 cut(s)	819
PsuI	RGATCY	1 cut(s)	547
RruI	TCGCGA	1 cut(s)	519
RsaI	GTAC	2 cut(s)	315, 995
RsaNI	GTAC	2 cut(s)	314, 994
SaqAI	TTAA	5 cut(s)	35, 354, 897, 905, 1236
Sau3AI	GATC	3 cut(s)	91, 547, 791
Sau96I	GGNCC	1 cut(s)	819
SchI	GAGTC	2 cut(s)	280, 1189
SfaNI	GCATC	2 cut(s)	196, 1150
SfcI	CTRYAG	1 cut(s)	680
SfuI	TTCGAA	1 cut(s)	1131
SinI	GGWCC	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
SsiI	CCGC	2 cut(s)	111, 817
SspMI	CTAG	6 cut(s)	176, 258, 615, 779, 797, 830
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	2 cut(s)	163, 903
TaiI	ACGT	3 cut(s)	106, 319, 1124
TaqI	TCGA	4 cut(s)	64, 367, 382, 1131
TatI	WGTACW	1 cut(s)	993
TfiI	GAWTC	5 cut(s)	47, 80, 618, 643, 943
Tru1I	TTAA	5 cut(s)	35, 354, 897, 905, 1236
Tru9I	TTAA	5 cut(s)	35, 354, 897, 905, 1236
TscAI	CASTG	2 cut(s)	243, 1261
TspDTI	ATGAA	4 cut(s)	210, 309, 752, 1167
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	2 cut(s)	243, 1261
VpaK11BI	GGWCC	1 cut(s)	819
XapI	RAATTY	3 cut(s)	226, 589, 1240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XmaJI	CCTAGG	1 cut(s)	778
XmiI	GTMKAC	1 cut(s)	973
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	6 cut(s)	176, 258, 615, 779, 797, 830
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.