Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003347

Physical Location & Seq

Genomic Coordinates Forward (+)

10475399 .. 10476490

Gene Structure 1092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCAATGCGATCTCCCCACTCTCCTTCCAGAAGAAGACCACCTAAGTTCTTTTGCTTGATACTGTTGATAGTTGCGCCTACATGTATTTTTGGACTCCTCACAAATTACCAGAAAATTTCATATTTCTTCCGACCACTTTGGGACAAGCCGCCAGCCCCTTTCATACGACTCCCACACTACTACGCTGAAAATGTCACCATGGACCATCTTTGCCACCTTCATGGCTGGTCCAGACGGGATGAACCCCGACGTGTTTTCGATGGCATCATCTTCAGCAATGAGTTGGACATGCTTGATATTAGGTGGAATGAGCTTTATCCATATGTCACAAAATTGGTAATCTTTGAGGCAAATACCACTTTTACTGGCATCCCGAAACCTCTCTATTTTGCTTCAAATCGTGGCAGATTTGCCTTTGCCGAGGATAAAATCATCCACGATGTCTTTCCTGGTGTAATTATCCCCCGACGATCACATGCAGACCCCTTTGATCTTGAGAAAAAGCAACGTATTGCTATGAATGCTTTACTTCGGCGTGCTGGGATTTCCAATGGCGATATATTGATAATGTCAGATACCGATGAGATACCAAGCCCACATACTGTGAAATTGCTGCAGTGGTGTGACGGGATTCCACCTAAAATGCATCTTGAGCTGAAGCACTACATGTACTCGTTTGAGTTCCCGGTGGACTTTAGCAGCTGGCGGGCGACAGCCCACATCTATGGCCCTCGTACCTTCTATCAGCATTCACGACAGACAAACTACTTATTTTCTGATGCAGGATGGCATTGCAGTTTTTGCTTCCGGCGGATTGAAGATTTTGTGTTTAAGATGACAGCTTACAGCCACGCAGACCGTGTGAAGCGCAGAGAATTTCTGGACCATTCAAGGATTCAGAAACTCATTTGTAGAGGAGATGATCTTTTCGACATGTTACCTGAAGAGTACTCGTTCAAGGAGTTGATCAAGAAGATGGGAGCGATACCCCGTTCGACTTCTGCAGTTCATCTTCCTTCTTACTTGTTAAAGAATGTAGACAAGTTTAGGTTCCTTCTCCCTGGAGGCTGTTTAAGGTCACAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04075 map00510 map01100 map04075

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

364

Amino Acids

42.74

Weight (kDa)

9.23

Isoelectric Point (pI)

64.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_17	PF04724	17 - 360	3.1e-176	Glycosyltransferase family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13290 AT2G13290
fragaria_vesca	FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02710 FvH4_1g02720
malus_domestica	MD15G1169200.v1.1
prunus_persica	Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1 Prupe.7G247400_v2.0.a1
pyrus_communis	pycom15g15090
rosa_chinensis	RchiOBHm_Chr2g0087801 RchiOBHm_Chr2g0087821
rosa_laevigata	RLG00000015901 RLG00000015903
rosa_multiflora	Rmu_sc0008385.1_g000005 Rmu_sc0008385.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153190 Rroxscaffold_2G00153210
rosa_rugosa	Rorug01G0478800 Rorug01G0478800 Rorug01G0478900
rosa_samantha	Rh2AG033200 Rh2AG033300 Rh2BG032300 Rh2CG033100 Rh2CG033300 Rh2DG032800 Rh2DG032900
rosa_wichuraiana	Rw2G002590 Rw2G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1041
AciI	CCGC	3 cut(s)	152, 709, 814
AcsI	RAATTY	2 cut(s)	117, 878
AcuI	CTGAAG	3 cut(s)	259, 680, 966
AfaI	GTAC	3 cut(s)	674, 739, 953
AflIII	ACRYGT	4 cut(s)	83, 253, 669, 936
AgsI	TTSAA	4 cut(s)	399, 821, 894, 961
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	451, 1063
AluBI	AGCT	4 cut(s)	316, 658, 705, 845
AluI	AGCT	4 cut(s)	316, 658, 705, 845
AoxI	GGCC	1 cut(s)	730
ApeKI	GCWGC	2 cut(s)	616, 702
ApoI	RAATTY	2 cut(s)	117, 878
AspLEI	GCGC	2 cut(s)	79, 873
AspS9I	GGNCC	4 cut(s)	205, 231, 731, 886
AsuC2I	CCSGG	1 cut(s)	689
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	3 cut(s)	205, 231, 886
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	603, 714
BccI	CCATC	4 cut(s)	216, 257, 783, 973
BciT130I	CCWGG	2 cut(s)	453, 1065
BclI	TGATCA	1 cut(s)	969
BcnI	CCSGG	1 cut(s)	689
BfmI	CTRYAG	2 cut(s)	617, 1005
BisI	GCNGC	3 cut(s)	152, 617, 703
BlsI	GCNGC	3 cut(s)	153, 618, 704
BmcAI	AGTACT	1 cut(s)	953
Bme1390I	CCNGG	3 cut(s)	453, 689, 1065
Bme18I	GGWCC	3 cut(s)	205, 231, 886
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	4 cut(s)	205, 231, 731, 886
BmiI	GGNNCC	1 cut(s)	1055
BmrFI	CCNGG	3 cut(s)	453, 689, 1065
BmsI	GCATC	4 cut(s)	276, 381, 658, 772
BpiI	GAAGAC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	1086
BpuEI	CTTGAG	2 cut(s)	518, 674
BpuMI	CCSGG	1 cut(s)	689
BsaJI	CCNNGG	3 cut(s)	201, 423, 1063
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	3 cut(s)	12, 286, 793
BseBI	CCWGG	2 cut(s)	453, 1065
BseDI	CCNNGG	3 cut(s)	201, 423, 1063
BseGI	GGATG	4 cut(s)	247, 372, 435, 794
BseMI	GCAATG	3 cut(s)	12, 286, 793
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	2 cut(s)	89, 933
BseXI	GCAGC	2 cut(s)	603, 714
BseYI	CCCAGC	1 cut(s)	542
BshFI	GGCC	1 cut(s)	732
BsiSI	CCGG	2 cut(s)	689, 811
BslFI	GGGAC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	2 cut(s)	529, 751
BsnI	GGCC	1 cut(s)	732
Bsp143I	GATC	5 cut(s)	11, 473, 493, 925, 969
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	3 cut(s)	152, 709, 814
BspANI	GGCC	1 cut(s)	732
BspLI	GGNNCC	1 cut(s)	1055
BspMAI	CTGCAG	2 cut(s)	621, 1009
BsrDI	GCAATG	3 cut(s)	12, 286, 793
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	201, 423, 1063
BssMI	GATC	5 cut(s)	11, 473, 493, 925, 969
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	453, 1065
Bst4CI	ACNGT	3 cut(s)	66, 607, 863
Bst6I	CTCTTC	1 cut(s)	942
BstAPI	GCANNNNNTGC	1 cut(s)	804
BstC8I	GCNNGC	4 cut(s)	156, 540, 707, 711
BstDEI	CTNAG	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	4 cut(s)	247, 372, 435, 794
BstHHI	GCGC	2 cut(s)	79, 873
BstKTI	GATC	5 cut(s)	14, 476, 496, 928, 972
BstMBI	GATC	5 cut(s)	11, 473, 493, 925, 969
BstMWI	GCNNNNNNNGC	3 cut(s)	524, 655, 804
BstNI	CCWGG	2 cut(s)	453, 1065
BstNSI	RCATGY	5 cut(s)	87, 295, 482, 673, 940
BstSCI	CCNGG	3 cut(s)	451, 687, 1063
BstSFI	CTRYAG	2 cut(s)	617, 1005
BstV1I	GCAGC	2 cut(s)	603, 714
BstV2I	GAAGAC	1 cut(s)	43
BstXI	CCANNNNNNTGG	2 cut(s)	224, 728
BsuRI	GGCC	1 cut(s)	732
BtgI	CCRYGG	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	4 cut(s)	247, 372, 435, 794
BtsI	GCAGTG	1 cut(s)	626
BtsIMutI	CAGTG	1 cut(s)	626
Cac8I	GCNNGC	4 cut(s)	156, 540, 707, 711
CfoI	GCGC	2 cut(s)	79, 873
Cfr13I	GGNCC	4 cut(s)	205, 231, 731, 886
Csp6I	GTAC	3 cut(s)	673, 738, 952
CviAII	CATG	7 cut(s)	84, 202, 224, 292, 479, 670, 937
CviQI	GTAC	3 cut(s)	673, 738, 952
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	5 cut(s)	13, 475, 495, 927, 971
DpnII	GATC	5 cut(s)	11, 473, 493, 925, 969
Eam1104I	CTCTTC	1 cut(s)	942
EarI	CTCTTC	1 cut(s)	942
EciI	GGCGGA	1 cut(s)	829
Eco130I	CCWWGG	1 cut(s)	201
Eco47I	GGWCC	3 cut(s)	205, 231, 886
Eco57I	CTGAAG	3 cut(s)	259, 680, 966
EcoRII	CCWGG	2 cut(s)	451, 1063
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	7 cut(s)	87, 205, 227, 295, 482, 673, 940
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	7 cut(s)	83, 201, 223, 291, 478, 669, 936
FauI	CCCGC	1 cut(s)	702
FauNDI	CATATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	969
FblI	GTMKAC	1 cut(s)	1041
Fnu4HI	GCNGC	3 cut(s)	152, 617, 703
FokI	GGATG	4 cut(s)	254, 359, 422, 801
Fsp4HI	GCNGC	3 cut(s)	152, 617, 703
GlaI	GCGC	2 cut(s)	78, 872
GluI	GCNGC	3 cut(s)	152, 617, 703
GsaI	CCCAGC	1 cut(s)	546
GsuI	CTGGAG	1 cut(s)	1086
HaeIII	GGCC	1 cut(s)	732
HapII	CCGG	2 cut(s)	689, 811
HhaI	GCGC	2 cut(s)	79, 873
Hin1II	CATG	7 cut(s)	87, 205, 227, 295, 482, 673, 940
Hin6I	GCGC	2 cut(s)	77, 871
HinP1I	GCGC	2 cut(s)	77, 871
HinfI	GANTC	4 cut(s)	96, 171, 634, 898
HpaII	CCGG	2 cut(s)	689, 811
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	694, 1042
Hpy188I	TCNGA	4 cut(s)	134, 577, 781, 903
Hpy188III	TCNNGA	8 cut(s)	30, 234, 376, 497, 653, 756, 884, 973
Hpy8I	GTNNAC	2 cut(s)	694, 1042
Hpy99I	CGWCG	2 cut(s)	255, 474
HpyAV	CCTTC	5 cut(s)	36, 230, 751, 1029, 1067
HpyCH4III	ACNGT	3 cut(s)	66, 607, 863
HpyCH4IV	ACGT	2 cut(s)	253, 511
HpyCH4V	TGCA	6 cut(s)	482, 619, 649, 785, 798, 1007
HpyF10VI	GCNNNNNNNGC	3 cut(s)	524, 655, 804
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	2 cut(s)	253, 511
Hsp92II	CATG	7 cut(s)	87, 205, 227, 295, 482, 673, 940
HspAI	GCGC	2 cut(s)	77, 871
Ksp22I	TGATCA	1 cut(s)	969
Kzo9I	GATC	5 cut(s)	11, 473, 493, 925, 969
LmnI	GCTCC	1 cut(s)	983
Lsp1109I	GCAGC	2 cut(s)	603, 714
LweI	GCATC	4 cut(s)	276, 381, 658, 772
MaeII	ACGT	2 cut(s)	253, 511
MaeIII	GTNAC	5 cut(s)	196, 328, 626, 939, 1080
MalI	GATC	5 cut(s)	13, 475, 495, 927, 971
MboI	GATC	5 cut(s)	11, 473, 493, 925, 969
MboII	GAAGA	8 cut(s)	45, 48, 121, 265, 833, 959, 988, 1007
MluCI	AATT	6 cut(s)	106, 117, 335, 459, 611, 878
MlyI	GAGTC	2 cut(s)	90, 165
MmeI	TCCRAC	2 cut(s)	157, 267
MnlI	CCTC	7 cut(s)	110, 343, 393, 418, 744, 911, 1061
Mph1103I	ATGCAT	1 cut(s)	651
MseI	TTAA	3 cut(s)	834, 1031, 1076
MslI	CAYNNNNRTG	2 cut(s)	222, 726
MspA1I	CMGCKG	1 cut(s)	705
MspI	CCGG	2 cut(s)	689, 811
MspR9I	CCNGG	3 cut(s)	453, 689, 1065
Mva1269I	GAATGC	2 cut(s)	529, 751
MvaI	CCWGG	2 cut(s)	453, 1065
MwoI	GCNNNNNNNGC	3 cut(s)	524, 655, 804
NciI	CCSGG	1 cut(s)	689
NcoI	CCATGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	5 cut(s)	11, 473, 493, 925, 969
NlaIII	CATG	7 cut(s)	87, 205, 227, 295, 482, 673, 940
NlaIV	GGNNCC	1 cut(s)	1055
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	4 cut(s)	196, 328, 626, 1080
NsiI	ATGCAT	1 cut(s)	651
NspI	RCATGY	5 cut(s)	87, 295, 482, 673, 940
PciI	ACATGT	3 cut(s)	83, 669, 936
PctI	GAATGC	2 cut(s)	529, 751
PfeI	GAWTC	2 cut(s)	634, 898
PkrI	GCNGC	3 cut(s)	153, 618, 704
PleI	GAGTC	2 cut(s)	90, 165
PpsI	GAGTC	2 cut(s)	90, 165
PscI	ACATGT	3 cut(s)	83, 669, 936
Psp6I	CCWGG	2 cut(s)	451, 1063
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	2 cut(s)	451, 1063
PspN4I	GGNNCC	1 cut(s)	1055
PspPI	GGNCC	4 cut(s)	205, 231, 731, 886
PstI	CTGCAG	2 cut(s)	621, 1009
PvuII	CAGCTG	1 cut(s)	705
RsaI	GTAC	3 cut(s)	674, 739, 953
RsaNI	GTAC	3 cut(s)	673, 738, 952
RseI	CAYNNNNRTG	2 cut(s)	222, 726
SaqAI	TTAA	3 cut(s)	834, 1031, 1076
SatI	GCNGC	3 cut(s)	152, 617, 703
Sau3AI	GATC	5 cut(s)	11, 473, 493, 925, 969
Sau96I	GGNCC	4 cut(s)	205, 231, 731, 886
ScaI	AGTACT	1 cut(s)	953
SchI	GAGTC	2 cut(s)	90, 165
ScrFI	CCNGG	3 cut(s)	453, 689, 1065
SfaNI	GCATC	4 cut(s)	276, 381, 658, 772
SfcI	CTRYAG	2 cut(s)	617, 1005
SinI	GGWCC	3 cut(s)	205, 231, 886
SmiMI	CAYNNNNRTG	2 cut(s)	222, 726
SmlI	CTYRAG	2 cut(s)	497, 653
SmoI	CTYRAG	2 cut(s)	497, 653
Sse9I	AATT	6 cut(s)	106, 117, 335, 459, 611, 878
SsiI	CCGC	3 cut(s)	152, 709, 814
StyD4I	CCNGG	3 cut(s)	451, 687, 1063
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	3 cut(s)	66, 607, 863
TaiI	ACGT	2 cut(s)	256, 514
TaqI	TCGA	3 cut(s)	261, 933, 998
TasI	AATT	6 cut(s)	106, 117, 335, 459, 611, 878
TatI	WGTACW	2 cut(s)	672, 951
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	634, 898
Tru1I	TTAA	3 cut(s)	834, 1031, 1076
Tru9I	TTAA	3 cut(s)	834, 1031, 1076
TscAI	CASTG	1 cut(s)	626
TseFI	GTSAC	4 cut(s)	196, 328, 626, 1080
TseI	GCWGC	2 cut(s)	616, 702
Tsp45I	GTSAC	4 cut(s)	196, 328, 626, 1080
TspDTI	ATGAA	6 cut(s)	111, 154, 212, 258, 536, 1001
TspRI	CASTG	1 cut(s)	626
VpaK11BI	GGWCC	3 cut(s)	205, 231, 886
XapI	RAATTY	2 cut(s)	117, 878
XceI	RCATGY	5 cut(s)	87, 295, 482, 673, 940
XmiI	GTMKAC	1 cut(s)	1041
ZrmI	AGTACT	1 cut(s)	953
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.